Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47282 * 328.68724 * 3 2 1 5 5 C 1.34777 * 119.99828 * 179.72337 * 4 3 2 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 3 8 8 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 9 9 C 1.53007 * 109.47063 * 300.00464 * 7 5 4 10 10 N 1.46896 * 109.47254 * 180.02562 * 7 5 4 11 11 C 1.46902 * 110.99791 * 205.00363 * 10 7 5 12 12 H 1.09000 * 110.64562 * 36.68175 * 11 10 7 13 13 C 1.55154 * 110.72477 * 160.02480 * 11 10 7 14 14 C 1.54907 * 101.58664 * 153.85755 * 13 11 10 15 15 N 1.47418 * 104.83342 * 322.99492 * 14 13 11 16 16 C 1.34778 * 125.64814 * 204.16346 * 15 14 13 17 17 O 1.21283 * 119.99987 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00097 * 359.95509 * 16 15 14 19 19 S 1.81000 * 109.47262 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99806 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00514 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00081 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47547 * 120.00122 * 24 22 20 27 27 H 1.48502 * 109.47001 * 239.99953 * 24 22 20 28 28 C 1.47026 * 108.70366 * 24.12341 * 15 14 13 29 29 H 4.40638 * 5.51400 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46956 * 208.68923 * 3 2 1 31 31 H 1.08994 * 109.46861 * 88.69207 * 3 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.46852 * 59.99630 * 9 7 5 34 34 H 1.08993 * 109.46731 * 179.97438 * 9 7 5 35 35 H 1.09003 * 109.46582 * 300.00001 * 9 7 5 36 36 H 1.00901 * 111.00059 * 328.94984 * 10 7 5 37 37 H 1.08997 * 111.00347 * 271.93818 * 13 11 10 38 38 H 1.09011 * 111.00119 * 35.78647 * 13 11 10 39 39 H 1.08992 * 110.36886 * 204.14872 * 14 13 11 40 40 H 1.09005 * 110.45385 * 81.87845 * 14 13 11 41 41 H 1.09003 * 109.46586 * 300.00116 * 18 16 15 42 42 H 1.08997 * 109.46829 * 59.99565 * 18 16 15 43 43 H 0.96997 * 120.00439 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.88170 * 239.52544 * 28 15 14 45 45 H 1.09005 * 110.01048 * 118.43476 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1791 0.7178 5 6 4.4600 -1.3918 0.8410 6 8 5.2478 -0.6038 0.3619 7 6 4.9631 -2.6087 1.5740 8 1 4.5968 -3.5082 1.0790 9 6 4.4576 -2.5795 3.0178 10 7 6.4320 -2.6104 1.5698 11 6 6.9572 -3.9747 1.7146 12 1 6.3289 -4.6871 1.1800 13 6 8.4258 -4.0530 1.2201 14 6 8.9683 -5.2472 2.0442 15 7 8.3213 -5.1208 3.3627 16 6 8.7956 -5.6195 4.5215 17 8 8.1769 -5.4539 5.5514 18 6 10.0947 -6.3832 4.5375 19 16 10.4586 -6.9194 6.2275 20 6 11.9829 -7.7617 5.9596 21 1 12.4020 -7.8170 4.9658 22 6 12.6456 -8.3532 7.0261 23 7 12.1352 -8.2854 8.2375 24 14 14.2620 -9.2456 6.7423 25 1 14.6175 -9.1797 5.3020 26 1 15.3311 -8.6012 7.5465 27 1 14.1219 -10.6659 7.1527 28 6 7.0733 -4.3598 3.2045 29 1 -1.0498 -0.0002 0.0003 30 1 3.0089 0.9024 0.4934 31 1 3.0093 -0.0226 -1.0274 32 1 2.5049 -1.8095 1.1007 33 1 3.3676 -2.5780 3.0212 34 1 4.8210 -3.4599 3.5478 35 1 4.8237 -1.6800 3.5128 36 1 6.7918 -2.1711 0.7357 37 1 8.4675 -4.2645 0.1516 38 1 8.9671 -3.1369 1.4569 39 1 10.0513 -5.1779 2.1448 40 1 8.6913 -6.1912 1.5746 41 1 10.0109 -7.2560 3.8898 42 1 10.8985 -5.7403 4.1787 43 1 12.5984 -8.6985 8.9829 44 1 7.1075 -3.4598 3.8184 45 1 6.2218 -4.9749 3.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490811062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -33.785240 kcal Electronic energy + Delta-G solvation = -25860.772026 eV Core-core repulsion = 22005.150073 eV Total energy + Delta-G solvation = -3855.621953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.34115 -40.82734 -38.84931 -36.72357 -36.22375 -34.58408 -33.75736 -32.75392 -31.09817 -30.37201 -28.58382 -28.12859 -27.62069 -24.71404 -23.92412 -21.78358 -21.31831 -20.70305 -19.74449 -19.48792 -18.25621 -17.85992 -17.61478 -17.38583 -16.88325 -16.77901 -16.55384 -16.09652 -15.80439 -15.63990 -15.49168 -14.81834 -14.54651 -14.47417 -14.33391 -14.21321 -14.10137 -13.75355 -13.36647 -13.19064 -13.17068 -13.03581 -12.90825 -12.81840 -12.59769 -12.50099 -12.05726 -11.85032 -11.76674 -11.68667 -11.49485 -11.15481 -10.98858 -10.82067 -10.27408 -10.20093 -9.69233 -9.58122 -8.67714 -8.34368 -6.13073 1.24159 1.35931 1.42157 1.45633 1.48714 1.57259 1.57690 1.81208 2.07212 2.27492 2.41709 2.99920 3.06520 3.23076 3.32907 3.45856 3.60148 3.65625 3.91231 4.05481 4.12181 4.18217 4.24093 4.33277 4.41160 4.45051 4.48183 4.52186 4.65382 4.68109 4.80791 4.85224 4.91676 4.95520 4.98847 5.15138 5.22097 5.29319 5.38651 5.42373 5.90528 6.20402 6.27573 6.39067 6.44525 6.55595 7.06817 7.07659 7.12330 8.75279 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.001683 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.879940 B =16636.572805 C =17164.738983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.715 5.715 5 C 0.519 3.481 6 O -0.567 6.567 7 C 0.072 3.928 8 H 0.101 0.899 9 C -0.142 4.142 10 N -0.675 5.675 11 C 0.088 3.912 12 H 0.090 0.910 13 C -0.123 4.123 14 C 0.092 3.908 15 N -0.617 5.617 16 C 0.544 3.456 17 O -0.569 6.569 18 C -0.119 4.119 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.273 1.273 28 C 0.114 3.886 29 H 0.251 0.749 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.416 0.584 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.362 0.638 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.057 0.943 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.166 12.584 -24.201 34.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.248 4.248 3 C 0.109 3.891 4 N -0.368 5.368 5 C 0.305 3.695 6 O -0.445 6.445 7 C -0.041 4.041 8 H 0.119 0.881 9 C -0.200 4.200 10 N -0.312 5.312 11 C -0.022 4.022 12 H 0.107 0.893 13 C -0.161 4.161 14 C -0.030 4.030 15 N -0.352 5.352 16 C 0.332 3.668 17 O -0.447 6.447 18 C -0.270 4.270 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.199 1.199 28 C -0.009 4.009 29 H 0.268 0.732 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.186 0.814 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.420 13.502 -22.160 33.648 hybrid contribution 0.935 -1.108 -1.234 1.903 sum -20.484 12.395 -23.393 33.474 Atomic orbital electron populations 1.25856 0.96762 0.96151 0.97842 1.22990 0.94520 1.04123 1.03210 1.17994 0.83766 0.89103 0.98197 1.45867 1.06859 1.26797 1.57295 1.20878 0.82146 0.87464 0.78978 1.90712 1.56063 1.47945 1.49771 1.21604 0.89368 0.95583 0.97520 0.88146 1.21881 1.01593 1.03016 0.93502 1.60209 1.05575 1.18023 1.47377 1.22553 0.96865 0.89619 0.93184 0.89271 1.22959 0.93725 0.98136 1.01259 1.22640 0.98928 1.00214 0.81246 1.48411 1.24508 1.54653 1.07606 1.19804 0.86030 0.78657 0.82268 1.90682 1.60610 1.59927 1.33517 1.23296 0.97502 1.02914 1.03260 1.85603 1.29693 1.70523 1.06705 1.23227 1.07911 1.40281 0.97871 0.89856 1.26137 1.02487 0.96559 0.93912 1.70192 1.40634 1.43563 1.00429 0.84889 0.76317 0.77524 0.79105 1.17926 1.19971 1.19866 1.22129 0.85606 0.95085 0.98086 0.73237 0.89637 0.89094 0.74669 0.89632 0.91629 0.93054 0.81448 0.86346 0.90148 0.89760 0.88963 0.87334 0.87641 0.91980 0.92421 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 19.25 74.32 1.43 0.46 16 2 C -0.25 -2.46 13.46 31.13 0.42 -2.04 16 3 C 0.23 2.55 6.15 84.57 0.52 3.07 16 4 N -0.72 -7.27 5.43 -472.13 -2.56 -9.83 16 5 C 0.52 7.80 7.18 87.66 0.63 8.42 16 6 O -0.57 -12.87 15.65 -3.04 -0.05 -12.92 16 7 C 0.07 0.89 3.03 44.17 0.13 1.02 16 8 H 0.10 0.74 7.49 -2.39 -0.02 0.72 16 9 C -0.14 -1.87 9.11 71.98 0.66 -1.21 16 10 N -0.67 -10.72 6.02 -467.23 -2.81 -13.53 16 11 C 0.09 1.30 3.24 46.10 0.15 1.45 16 12 H 0.09 0.93 7.53 -2.39 -0.02 0.91 16 13 C -0.12 -1.62 6.52 31.98 0.21 -1.41 16 14 C 0.09 1.69 6.69 86.86 0.58 2.27 16 15 N -0.62 -17.52 3.33 -811.79 -2.70 -20.22 16 16 C 0.54 21.71 7.87 87.66 0.69 22.40 16 17 O -0.57 -28.10 16.19 -3.04 -0.05 -28.15 16 18 C -0.12 -4.92 5.16 71.24 0.37 -4.55 16 19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -31.46 9.50 67.95 0.65 -30.82 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.79 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 24 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 28 C 0.11 2.73 4.97 86.73 0.43 3.16 16 29 H 0.25 -0.24 7.80 -4.43 -0.03 -0.27 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.42 2.31 7.87 -92.71 -0.73 1.58 16 33 H 0.08 0.66 7.56 -2.39 -0.02 0.64 16 34 H 0.06 1.02 5.91 -2.39 -0.01 1.01 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.36 5.88 7.21 -89.69 -0.65 5.23 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.08 1.55 7.47 -2.39 -0.02 1.53 16 40 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.11 3.99 7.85 -2.40 -0.02 3.97 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 44 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 45 H 0.06 1.49 7.48 -2.38 -0.02 1.47 16 Total: -1.00 -84.97 394.17 -0.05 -85.02 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.36 Total: 16.37 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.33 Total: 3.47 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -7.79 Total: -99.79 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.10 Total: -41.07 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -84.97 -0.05 -85.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490811062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.237 kcal (2) G-P(sol) polarization free energy of solvation -84.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds