Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00223 * 2 1 4 4 C 1.50694 * 109.47162 * 293.95508 * 3 2 1 5 5 C 1.41383 * 126.80648 * 94.99674 * 4 3 2 6 6 C 1.35449 * 103.98640 * 180.02562 * 5 4 3 7 7 O 1.34038 * 106.44712 * 359.97438 * 6 5 4 8 8 N 1.20918 * 111.56870 * 359.71087 * 7 6 5 9 9 C 1.46906 * 110.99918 * 123.95283 * 2 1 3 10 10 H 1.09006 * 109.49774 * 185.97785 * 9 2 1 11 11 C 1.53041 * 109.49665 * 65.88578 * 9 2 1 12 12 C 1.53041 * 109.54036 * 178.68179 * 11 9 2 13 13 C 1.53199 * 109.30967 * 61.36480 * 12 11 9 14 14 N 1.46932 * 108.77443 * 305.36570 * 13 12 11 15 15 C 1.34772 * 120.63045 * 233.62989 * 14 13 12 16 16 O 1.21285 * 120.00053 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99786 * 359.97438 * 15 14 13 18 18 S 1.81001 * 109.46921 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00093 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00069 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99963 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47207 * 59.99770 * 23 21 19 25 25 H 1.48501 * 109.46835 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46888 * 299.99458 * 23 21 19 27 27 C 1.46924 * 118.73760 * 53.60947 * 14 13 12 28 28 H 1.08998 * 109.47268 * 296.04544 * 1 2 3 29 29 H 1.09005 * 109.46972 * 56.04494 * 1 2 3 30 30 H 1.09000 * 109.47631 * 176.04589 * 1 2 3 31 31 H 1.08998 * 109.46908 * 53.95569 * 3 2 1 32 32 H 1.09001 * 109.47085 * 173.95438 * 3 2 1 33 33 H 1.08003 * 127.99954 * 0.04016 * 5 4 3 34 34 H 1.08005 * 126.77182 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.45665 * 298.70278 * 11 9 2 36 36 H 1.08996 * 109.46303 * 58.66060 * 11 9 2 37 37 H 1.08997 * 109.49383 * 301.41915 * 12 11 9 38 38 H 1.08992 * 109.52298 * 181.32726 * 12 11 9 39 39 H 1.09000 * 109.58549 * 185.58262 * 13 12 11 40 40 H 1.08993 * 109.70331 * 65.21794 * 13 12 11 41 41 H 1.08997 * 109.46751 * 299.99540 * 17 15 14 42 42 H 1.08992 * 109.47251 * 59.99804 * 17 15 14 43 43 H 0.96996 * 120.00199 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.58449 * 186.60460 * 27 14 13 45 45 H 1.08999 * 109.58539 * 66.18211 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.5191 2.8783 -1.5403 6 6 0.6470 3.2281 -2.8425 7 8 1.7608 2.6305 -3.2884 8 7 2.2984 1.9860 -2.4180 9 6 1.9954 -0.7660 1.1376 10 1 3.0798 -0.6624 1.1754 11 6 1.6282 -2.2425 0.9730 12 6 2.2042 -3.0466 2.1408 13 6 1.5965 -2.5406 3.4529 14 7 1.8196 -1.0916 3.5496 15 6 2.4119 -0.5591 4.6368 16 8 2.5909 0.6386 4.7044 17 6 2.8517 -1.4518 5.7685 18 16 3.6068 -0.4471 7.0710 19 6 4.0149 -1.7080 8.2322 20 1 3.7816 -2.7396 8.0135 21 6 4.6353 -1.3754 9.4284 22 7 4.9192 -0.1181 9.6952 23 14 5.0686 -2.7122 10.6591 24 1 6.0004 -3.6818 10.0292 25 1 5.7191 -2.1005 11.8457 26 1 3.8313 -3.4168 11.0806 27 6 1.3853 -0.2342 2.4383 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 -0.2569 3.1674 -0.8470 34 1 -0.0174 3.8633 -3.4096 35 1 0.5433 -2.3476 0.9599 36 1 2.0403 -2.6170 0.0360 37 1 3.2867 -2.9219 2.1693 38 1 1.9627 -4.1015 2.0110 39 1 2.0756 -3.0410 4.2944 40 1 0.5263 -2.7471 3.4659 41 1 1.9875 -1.9799 6.1715 42 1 3.5795 -2.1744 5.3995 43 1 5.3531 0.1144 10.5310 44 1 1.7250 0.7871 2.6104 45 1 0.2979 -0.2525 2.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491908230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 41.897768 kcal Electronic energy + Delta-G solvation = -26964.929236 eV Core-core repulsion = 23112.589145 eV Total energy + Delta-G solvation = -3852.340091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.21222 -40.36745 -38.45419 -36.37081 -34.27118 -32.48133 -32.42432 -31.96214 -30.66496 -28.85450 -28.19132 -25.61775 -25.33909 -25.03612 -23.42465 -22.53496 -21.02630 -20.29879 -19.05831 -18.04471 -17.86762 -17.70104 -16.83003 -16.12375 -15.97515 -15.67411 -15.25145 -14.82057 -14.75179 -14.53761 -14.40302 -13.96384 -13.79188 -13.64520 -13.44741 -13.13041 -12.87023 -12.68492 -12.48604 -12.33067 -12.12653 -11.90421 -11.51897 -11.50038 -11.08401 -11.05588 -11.05169 -11.03638 -10.78993 -10.72101 -10.43783 -9.93514 -9.83187 -9.42938 -9.07833 -9.02870 -8.27268 -8.24805 -6.52246 -6.22962 -3.93953 1.22400 1.88279 2.86475 2.97990 3.00551 3.22302 3.23756 3.27795 3.50770 3.65538 3.88950 4.18748 4.27783 4.47247 4.58805 4.72678 4.79553 4.83221 4.87613 4.93293 4.98998 5.04763 5.12059 5.14713 5.19390 5.28391 5.34875 5.35802 5.43540 5.53899 5.59139 5.62369 5.64702 5.69723 5.74409 5.80875 5.84701 5.96063 6.07461 6.09361 6.43633 6.63854 6.75795 7.50691 7.57772 8.01470 8.33388 8.51232 9.22097 10.84408 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.002168 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.013180 B =12912.289949 C =13695.598097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.524 5.524 3 C 0.126 3.874 4 C 0.026 3.974 5 C -0.231 4.231 6 C -0.063 4.063 7 O 0.100 5.900 8 N -0.347 5.347 9 C 0.072 3.928 10 H 0.090 0.910 11 C -0.107 4.107 12 C -0.135 4.135 13 C 0.106 3.894 14 N -0.616 5.616 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.081 3.919 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.170 0.830 34 H 0.215 0.785 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.091 0.909 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.456 -0.448 -24.448 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.248 5.248 3 C -0.002 4.002 4 C -0.133 4.133 5 C -0.253 4.253 6 C -0.144 4.144 7 O 0.032 5.968 8 N -0.050 5.050 9 C -0.037 4.037 10 H 0.108 0.892 11 C -0.145 4.145 12 C -0.173 4.173 13 C -0.017 4.017 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.392 6.392 17 C -0.300 4.300 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.044 4.044 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.187 0.813 34 H 0.232 0.768 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.807 0.628 -25.018 27.260 hybrid contribution -1.093 -1.478 1.863 2.617 sum -11.900 -0.850 -23.155 26.048 Atomic orbital electron populations 1.22563 0.87399 1.02732 1.00886 1.62210 1.08291 1.12207 1.42071 1.20392 1.01689 0.88188 0.89925 1.23423 0.93921 0.99987 0.96005 1.22786 1.01831 1.03346 0.97312 1.26006 0.91854 1.00797 0.95748 1.84871 1.31000 1.46754 1.34215 1.73882 1.20075 1.12414 0.98647 1.22149 1.00373 0.94019 0.87153 0.89178 1.21538 1.01041 0.93133 0.98806 1.21929 1.01438 0.99762 0.94208 1.21760 1.00722 0.80377 0.98845 1.48024 1.61616 1.07393 1.18255 1.20376 0.76161 0.88851 0.82299 1.90686 1.53998 1.15489 1.79061 1.23547 1.04196 1.03011 0.99270 1.85404 1.75306 1.10749 1.12005 1.22812 1.46037 0.94574 1.04962 0.90980 1.24994 0.94955 0.96204 0.97423 1.70004 1.39169 1.16517 1.24580 0.86224 0.78737 0.80826 0.79719 1.19916 1.20805 1.19929 1.22243 0.99166 0.96555 0.86403 0.94548 0.91406 0.90796 0.91732 0.88680 0.81263 0.76814 0.91687 0.90762 0.91043 0.90268 0.89041 0.91545 0.89264 0.89197 0.92113 0.89069 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.60 60.06 0.52 0.61 16 2 N -0.52 -5.08 4.70 -236.19 -1.11 -6.20 16 3 C 0.13 1.27 5.13 -4.98 -0.03 1.25 16 4 C 0.03 0.27 6.01 -82.10 -0.49 -0.23 16 5 C -0.23 -1.67 10.09 -39.38 -0.40 -2.07 16 6 C -0.06 -0.37 12.30 29.74 0.37 -0.01 16 7 O 0.10 0.93 11.20 17.18 0.19 1.12 16 8 N -0.35 -4.03 12.07 33.42 0.40 -3.63 16 9 C 0.07 0.74 2.34 -67.59 -0.16 0.58 16 10 H 0.09 1.06 7.93 -51.93 -0.41 0.65 16 11 C -0.11 -0.92 5.05 -26.69 -0.13 -1.06 16 12 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 13 C 0.11 1.12 6.34 -3.70 -0.02 1.10 16 14 N -0.62 -8.59 2.97 -172.77 -0.51 -9.11 16 15 C 0.54 10.11 7.72 -10.98 -0.08 10.02 16 16 O -0.52 -11.75 15.28 5.55 0.08 -11.67 16 17 C -0.15 -3.02 4.50 36.01 0.16 -2.85 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 23 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.08 0.97 5.01 -3.71 -0.02 0.95 16 28 H 0.04 0.28 6.10 -51.93 -0.32 -0.03 16 29 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 30 H 0.07 0.54 6.50 -51.93 -0.34 0.21 16 31 H 0.06 0.62 7.20 -51.93 -0.37 0.24 16 32 H 0.09 1.04 7.93 -51.93 -0.41 0.63 16 33 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.22 0.30 8.06 -52.48 -0.42 -0.12 16 35 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.99 5.93 -51.93 -0.31 0.69 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.66 7.94 -51.92 -0.41 1.25 16 42 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.09 1.28 6.05 -51.93 -0.31 0.97 16 45 H 0.07 0.72 6.04 -51.93 -0.31 0.41 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -35.47 372.14 -8.45 -43.92 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.35 Total: -1.15 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.26 Total: -5.92 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.49 Total: -44.32 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.28 Total: -10.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.47 -8.45 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.819 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds