Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46897 * 111.00223 * 2 1 4 4 C 1.50694 * 109.47162 * 293.95508 * 3 2 1 5 5 C 1.41383 * 126.80648 * 94.99674 * 4 3 2 6 6 C 1.35449 * 103.98640 * 180.02562 * 5 4 3 7 7 O 1.34038 * 106.44712 * 359.97438 * 6 5 4 8 8 N 1.20918 * 111.56870 * 359.71087 * 7 6 5 9 9 C 1.46906 * 110.99918 * 123.95283 * 2 1 3 10 10 H 1.09006 * 109.49774 * 185.97785 * 9 2 1 11 11 C 1.53041 * 109.49665 * 65.88578 * 9 2 1 12 12 C 1.53041 * 109.54036 * 178.68179 * 11 9 2 13 13 C 1.53199 * 109.30967 * 61.36480 * 12 11 9 14 14 N 1.46932 * 108.77443 * 305.36570 * 13 12 11 15 15 C 1.34772 * 120.63045 * 233.62989 * 14 13 12 16 16 O 1.21285 * 120.00053 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.99786 * 359.97438 * 15 14 13 18 18 S 1.81001 * 109.46921 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00093 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00069 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99963 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99913 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47207 * 59.99770 * 23 21 19 25 25 H 1.48501 * 109.46835 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46888 * 299.99458 * 23 21 19 27 27 C 1.46924 * 118.73760 * 53.60947 * 14 13 12 28 28 H 1.08998 * 109.47268 * 296.04544 * 1 2 3 29 29 H 1.09005 * 109.46972 * 56.04494 * 1 2 3 30 30 H 1.09000 * 109.47631 * 176.04589 * 1 2 3 31 31 H 1.08998 * 109.46908 * 53.95569 * 3 2 1 32 32 H 1.09001 * 109.47085 * 173.95438 * 3 2 1 33 33 H 1.08003 * 127.99954 * 0.04016 * 5 4 3 34 34 H 1.08005 * 126.77182 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.45665 * 298.70278 * 11 9 2 36 36 H 1.08996 * 109.46303 * 58.66060 * 11 9 2 37 37 H 1.08997 * 109.49383 * 301.41915 * 12 11 9 38 38 H 1.08992 * 109.52298 * 181.32726 * 12 11 9 39 39 H 1.09000 * 109.58549 * 185.58262 * 13 12 11 40 40 H 1.08993 * 109.70331 * 65.21794 * 13 12 11 41 41 H 1.08997 * 109.46751 * 299.99540 * 17 15 14 42 42 H 1.08992 * 109.47251 * 59.99804 * 17 15 14 43 43 H 0.96996 * 120.00199 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.58449 * 186.60460 * 27 14 13 45 45 H 1.08999 * 109.58539 * 66.18211 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.5191 2.8783 -1.5403 6 6 0.6470 3.2281 -2.8425 7 8 1.7608 2.6305 -3.2884 8 7 2.2984 1.9860 -2.4180 9 6 1.9954 -0.7660 1.1376 10 1 3.0798 -0.6624 1.1754 11 6 1.6282 -2.2425 0.9730 12 6 2.2042 -3.0466 2.1408 13 6 1.5965 -2.5406 3.4529 14 7 1.8196 -1.0916 3.5496 15 6 2.4119 -0.5591 4.6368 16 8 2.5909 0.6386 4.7044 17 6 2.8517 -1.4518 5.7685 18 16 3.6068 -0.4471 7.0710 19 6 4.0149 -1.7080 8.2322 20 1 3.7816 -2.7396 8.0135 21 6 4.6353 -1.3754 9.4284 22 7 4.9192 -0.1181 9.6952 23 14 5.0686 -2.7122 10.6591 24 1 6.0004 -3.6818 10.0292 25 1 5.7191 -2.1005 11.8457 26 1 3.8313 -3.4168 11.0806 27 6 1.3853 -0.2342 2.4383 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 -0.2569 3.1674 -0.8470 34 1 -0.0174 3.8633 -3.4096 35 1 0.5433 -2.3476 0.9599 36 1 2.0403 -2.6170 0.0360 37 1 3.2867 -2.9219 2.1693 38 1 1.9627 -4.1015 2.0110 39 1 2.0756 -3.0410 4.2944 40 1 0.5263 -2.7471 3.4659 41 1 1.9875 -1.9799 6.1715 42 1 3.5795 -2.1744 5.3995 43 1 5.3531 0.1144 10.5310 44 1 1.7250 0.7871 2.6104 45 1 0.2979 -0.2525 2.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491908230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = 16.894776 kcal Electronic energy + Delta-G solvation = -26966.013447 eV Core-core repulsion = 23112.589145 eV Total energy + Delta-G solvation = -3853.424302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.89363 -41.47172 -39.60199 -37.38489 -35.04948 -34.59587 -33.42540 -32.60068 -31.81404 -30.08660 -28.93134 -27.70833 -26.22732 -26.09239 -24.07428 -23.33341 -21.76577 -21.32864 -20.24092 -19.53635 -18.68849 -18.55217 -18.23831 -17.20804 -16.93210 -16.88750 -16.55990 -16.36084 -15.93943 -15.61932 -15.26791 -15.11931 -14.94200 -14.52460 -14.46252 -14.20264 -14.02592 -13.86570 -13.59268 -13.25786 -13.18479 -13.06979 -12.87233 -12.78712 -12.63795 -12.32938 -12.23583 -11.91214 -11.85184 -11.71616 -11.52440 -11.13713 -11.13288 -10.92513 -10.53824 -10.28198 -10.04053 -9.22016 -8.69129 -8.35370 -6.14238 0.65688 1.21569 1.25465 1.43524 1.44487 1.52203 1.54571 2.03755 2.26534 2.49436 2.85223 2.98684 3.18791 3.23668 3.56929 3.64483 3.73493 3.88603 3.94123 4.01206 4.14135 4.20789 4.22642 4.24643 4.34075 4.41784 4.49079 4.49803 4.53906 4.57918 4.67012 4.75375 4.81270 4.84599 4.87224 5.02499 5.07715 5.14478 5.21641 5.33529 5.40520 5.43766 5.85812 5.94535 6.18519 6.23977 7.05536 7.09079 7.39863 8.73647 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022722 B = 0.002168 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.013180 B =12912.289949 C =13695.598097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.526 5.526 3 C 0.128 3.872 4 C 0.010 3.990 5 C -0.240 4.240 6 C -0.043 4.043 7 O 0.089 5.911 8 N -0.388 5.388 9 C 0.080 3.920 10 H 0.067 0.933 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.097 3.903 14 N -0.603 5.603 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.122 4.122 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.260 1.260 27 C 0.083 3.917 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.191 0.809 34 H 0.262 0.738 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.636 -2.805 -25.733 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.250 5.250 3 C 0.000 4.000 4 C -0.149 4.149 5 C -0.262 4.262 6 C -0.123 4.123 7 O 0.023 5.977 8 N -0.093 5.093 9 C -0.029 4.029 10 H 0.085 0.915 11 C -0.138 4.138 12 C -0.166 4.166 13 C -0.025 4.025 14 N -0.337 5.337 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.273 4.273 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.041 4.041 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.208 0.792 34 H 0.278 0.722 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.016 -1.771 -26.358 29.450 hybrid contribution -0.514 -0.708 2.088 2.264 sum -13.530 -2.479 -24.270 27.897 Atomic orbital electron populations 1.22614 0.85906 1.03687 1.01205 1.62254 1.09606 1.11827 1.41341 1.20297 1.00524 0.88747 0.90459 1.23575 0.95057 1.00726 0.95523 1.23068 1.01605 1.03131 0.98397 1.26877 0.90526 0.99333 0.95613 1.84816 1.32129 1.46847 1.33933 1.73880 1.21624 1.14264 0.99527 1.22045 0.98970 0.95528 0.86377 0.91511 1.21520 1.02160 0.91243 0.98920 1.21910 1.00409 1.01351 0.92970 1.22128 1.02674 0.77734 0.99952 1.48038 1.59426 1.09328 1.16936 1.20189 0.76652 0.87958 0.83262 1.90669 1.56456 1.17335 1.80240 1.23355 1.04626 1.01991 0.97301 1.85607 1.76817 1.14646 1.15642 1.23156 1.46056 0.94838 1.05248 0.89791 1.26152 0.94556 0.98841 0.99683 1.70179 1.40208 1.19101 1.25327 0.84996 0.78967 0.77404 0.76594 1.18618 1.20473 1.18498 1.22364 1.00336 0.95031 0.86364 0.94276 0.90996 0.89464 0.91727 0.90764 0.79221 0.72190 0.89858 0.90376 0.92477 0.87287 0.89178 0.88781 0.87275 0.87472 0.91999 0.91777 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.60 127.69 1.10 1.28 16 2 N -0.53 -9.92 4.70 -901.17 -4.24 -14.16 16 3 C 0.13 2.70 5.13 85.56 0.44 3.14 16 4 C 0.01 0.20 6.01 43.58 0.26 0.46 16 5 C -0.24 -3.10 10.09 22.40 0.23 -2.88 16 6 C -0.04 -0.41 12.30 67.17 0.83 0.41 16 7 O 0.09 1.61 11.20 71.66 0.80 2.41 16 8 N -0.39 -9.14 12.07 -49.55 -0.60 -9.74 16 9 C 0.08 1.59 2.34 44.99 0.11 1.70 16 10 H 0.07 1.64 7.93 -2.38 -0.02 1.62 16 11 C -0.10 -1.46 5.05 30.62 0.15 -1.31 16 12 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 13 C 0.10 1.76 6.34 86.36 0.55 2.31 16 14 N -0.60 -16.25 2.97 -818.90 -2.43 -18.69 16 15 C 0.53 20.35 7.72 87.66 0.68 21.03 16 16 O -0.57 -27.05 15.28 -3.04 -0.05 -27.10 16 17 C -0.12 -4.89 4.50 71.24 0.32 -4.57 16 18 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -31.13 9.50 67.96 0.65 -30.48 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.71 5.49 84.86 0.47 1.17 16 22 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 23 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 27 C 0.08 1.95 5.01 86.36 0.43 2.39 16 28 H 0.04 0.53 6.10 -2.39 -0.01 0.51 16 29 H 0.07 0.97 6.36 -2.38 -0.02 0.95 16 30 H 0.09 0.99 6.50 -2.39 -0.02 0.98 16 31 H 0.06 1.31 7.20 -2.39 -0.02 1.30 16 32 H 0.07 1.81 7.93 -2.39 -0.02 1.80 16 33 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.26 -0.35 8.06 -2.91 -0.02 -0.37 16 35 H 0.08 0.95 6.61 -2.39 -0.02 0.94 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.70 5.93 -2.39 -0.01 1.69 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 3.93 7.94 -2.40 -0.02 3.91 16 42 H 0.11 3.91 7.69 -2.40 -0.02 3.89 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.06 1.89 6.05 -2.39 -0.01 1.88 16 45 H 0.09 1.73 6.04 -2.39 -0.01 1.71 16 Total: -1.00 -81.99 372.14 2.03 -79.96 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.01 Total: 14.64 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 6.39 Total: -7.01 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -6.99 Total: -98.57 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.76 Total: -24.69 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -81.99 2.03 -79.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.859 kcal (2) G-P(sol) polarization free energy of solvation -81.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds