Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00043 * 2 1 4 4 C 1.50696 * 109.47008 * 293.95182 * 3 2 1 5 5 C 1.41380 * 126.80347 * 94.99495 * 4 3 2 6 6 C 1.35451 * 103.98649 * 179.77327 * 5 4 3 7 7 O 1.34041 * 106.44823 * 0.22995 * 6 5 4 8 8 N 1.20916 * 111.56681 * 359.97438 * 7 6 5 9 9 C 1.46902 * 111.00011 * 123.94883 * 2 1 3 10 10 H 1.09003 * 109.50209 * 295.98305 * 9 2 1 11 11 C 1.53039 * 109.49501 * 56.05045 * 9 2 1 12 12 C 1.53049 * 109.53791 * 181.31568 * 11 9 2 13 13 C 1.53183 * 109.31182 * 298.63280 * 12 11 9 14 14 N 1.46923 * 108.77868 * 54.63465 * 13 12 11 15 15 C 1.34774 * 120.63558 * 126.36843 * 14 13 12 16 16 O 1.21282 * 120.00321 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99901 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47082 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99555 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00388 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99896 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00465 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46917 * 90.00088 * 23 21 19 25 25 H 1.48497 * 109.47427 * 210.00443 * 23 21 19 26 26 H 1.48502 * 109.46715 * 330.00327 * 23 21 19 27 27 C 1.46935 * 118.73926 * 306.39227 * 14 13 12 28 28 H 1.08994 * 109.46927 * 60.00488 * 1 2 3 29 29 H 1.08997 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47040 * 300.00194 * 1 2 3 31 31 H 1.08999 * 109.47243 * 173.95472 * 3 2 1 32 32 H 1.08995 * 109.47218 * 53.94823 * 3 2 1 33 33 H 1.08002 * 128.00820 * 0.04548 * 5 4 3 34 34 H 1.08004 * 126.77929 * 180.22800 * 6 5 4 35 35 H 1.09009 * 109.45976 * 301.33272 * 11 9 2 36 36 H 1.08997 * 109.46705 * 61.29356 * 11 9 2 37 37 H 1.09001 * 109.49483 * 58.58151 * 12 11 9 38 38 H 1.09002 * 109.49743 * 178.67672 * 12 11 9 39 39 H 1.09005 * 109.58961 * 174.41932 * 13 12 11 40 40 H 1.09000 * 109.59058 * 294.70524 * 13 12 11 41 41 H 1.09006 * 109.47007 * 299.99818 * 17 15 14 42 42 H 1.08997 * 109.47086 * 59.99815 * 17 15 14 43 43 H 0.96997 * 120.00025 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58275 * 293.81937 * 27 14 13 45 45 H 1.08993 * 109.58517 * 173.39461 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 0.5191 2.8781 -1.5404 6 6 0.6501 3.2326 -2.8411 7 8 1.7626 2.6329 -3.2877 8 7 2.2938 1.9790 -2.4204 9 6 1.9955 -0.7659 1.1377 10 1 1.7056 -0.2795 2.0691 11 6 1.4263 -2.1861 1.1044 12 6 1.9484 -2.9750 2.3075 13 6 3.4757 -3.0643 2.2307 14 7 4.0237 -1.7060 2.1160 15 6 4.9670 -1.2712 2.9748 16 8 5.4111 -0.1475 2.8700 17 6 5.4701 -2.1815 4.0655 18 16 6.7223 -1.3155 5.0443 19 6 7.1232 -2.5741 6.2105 20 1 6.6263 -3.5318 6.1638 21 6 8.0770 -2.3342 7.1899 22 7 8.3770 -3.2746 8.0608 23 14 8.9361 -0.6775 7.2714 24 1 8.1642 0.2377 8.1498 25 1 10.3037 -0.8555 7.8219 26 1 9.0233 -0.0976 5.9071 27 6 3.5234 -0.8302 1.0476 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.0797 1.3444 0.1082 32 1 1.5611 1.9274 0.8308 33 1 -0.2570 3.1674 -0.8472 34 1 -0.0112 3.8723 -3.4068 35 1 0.3378 -2.1422 1.1436 36 1 1.7367 -2.6803 0.1838 37 1 1.6595 -2.4680 3.2281 38 1 1.5241 -3.9791 2.2960 39 1 3.8600 -3.5383 3.1340 40 1 3.7640 -3.6517 1.3589 41 1 4.6396 -2.4695 4.7102 42 1 5.9104 -3.0734 3.6201 43 1 9.0438 -3.1071 8.7451 44 1 3.8157 -1.2332 0.0779 45 1 3.9391 0.1699 1.1702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491908231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = 42.721954 kcal Electronic energy + Delta-G solvation = -26986.744319 eV Core-core repulsion = 23134.439967 eV Total energy + Delta-G solvation = -3852.304352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.23383 -40.30336 -38.48983 -36.46204 -34.30495 -32.50389 -32.42997 -31.94814 -31.04856 -28.94780 -28.36942 -25.65247 -25.50141 -24.45509 -23.44430 -22.62201 -21.06209 -20.52795 -19.19181 -18.08737 -17.89245 -17.70476 -16.96905 -16.07948 -15.90084 -15.65390 -15.28489 -15.00642 -14.84856 -14.69616 -14.47074 -13.86280 -13.76974 -13.70543 -13.41713 -13.24646 -12.97212 -12.83808 -12.71682 -12.28574 -12.07524 -11.93460 -11.77910 -11.39828 -11.28879 -11.17469 -11.06563 -11.00888 -10.76323 -10.58990 -10.38183 -9.95309 -9.86175 -9.49171 -9.00828 -8.77537 -8.60553 -8.49329 -6.92489 -6.29351 -4.01119 1.20414 1.85324 2.67402 2.91126 2.95696 3.13965 3.32701 3.50481 3.52640 3.64935 3.85493 4.24452 4.32381 4.36514 4.58669 4.65949 4.69003 4.78383 4.82611 4.86818 4.90475 5.06879 5.07445 5.09697 5.12116 5.17995 5.22564 5.31827 5.38900 5.42134 5.52168 5.61468 5.63433 5.67616 5.72699 5.73186 5.78287 5.83712 5.98227 6.03981 6.41528 6.59615 6.71502 7.45143 7.93683 8.00034 8.40846 8.42156 9.16899 10.79795 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002363 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.192240 B =11846.500373 C =12948.586063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.529 5.529 3 C 0.124 3.876 4 C 0.026 3.974 5 C -0.232 4.232 6 C -0.063 4.063 7 O 0.101 5.899 8 N -0.345 5.345 9 C 0.073 3.927 10 H 0.050 0.950 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.105 3.895 14 N -0.617 5.617 15 C 0.534 3.466 16 O -0.520 6.520 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.119 3.881 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.169 0.831 34 H 0.215 0.785 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.075 0.925 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.005 6.981 -20.289 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.004 4.004 4 C -0.134 4.134 5 C -0.254 4.254 6 C -0.144 4.144 7 O 0.033 5.967 8 N -0.047 5.047 9 C -0.036 4.036 10 H 0.068 0.932 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.018 4.018 14 N -0.353 5.353 15 C 0.322 3.678 16 O -0.394 6.394 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.004 4.004 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.186 0.814 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.926 7.724 -21.084 30.021 hybrid contribution -1.278 -0.016 1.584 2.036 sum -21.204 7.707 -19.500 29.821 Atomic orbital electron populations 1.22497 0.86956 1.02612 1.00745 1.61889 1.08191 1.12056 1.43309 1.20451 1.02101 0.87930 0.89926 1.23403 0.94033 1.00043 0.95926 1.22759 1.01739 1.03573 0.97318 1.26009 0.91737 1.00878 0.95785 1.84884 1.31178 1.46209 1.34445 1.73902 1.20120 1.12053 0.98643 1.22002 0.95434 0.94614 0.91544 0.93220 1.21651 1.00251 0.94011 0.99142 1.21933 0.95534 1.01063 0.98762 1.21782 0.93493 0.83267 1.03303 1.48024 1.40832 1.14597 1.31831 1.20317 0.78178 0.87762 0.81528 1.90686 1.56674 1.20112 1.71937 1.23306 1.03403 1.01895 0.98501 1.84807 1.47278 1.23417 1.36187 1.22303 1.27976 1.00917 1.15599 0.89382 1.24713 0.95349 0.97243 0.94018 1.69938 1.32133 1.33077 1.16518 0.86736 0.79642 0.84096 0.81396 1.19243 1.19935 1.15903 1.21529 0.91813 0.96468 0.90592 0.91351 0.90575 0.95319 0.88209 0.92105 0.81371 0.76833 0.91375 0.90686 0.91264 0.90123 0.88977 0.91123 0.88539 0.88438 0.91946 0.90660 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.97 60.07 0.54 0.69 16 2 N -0.53 -5.03 4.62 -236.19 -1.09 -6.12 16 3 C 0.12 1.23 5.37 -4.98 -0.03 1.20 16 4 C 0.03 0.25 6.01 -82.10 -0.49 -0.24 16 5 C -0.23 -1.59 10.20 -39.38 -0.40 -1.99 16 6 C -0.06 -0.36 12.30 29.74 0.37 0.01 16 7 O 0.10 0.94 11.20 17.17 0.19 1.14 16 8 N -0.34 -4.02 12.07 33.43 0.40 -3.62 16 9 C 0.07 0.73 2.09 -67.59 -0.14 0.59 16 10 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.11 -0.93 4.86 -26.69 -0.13 -1.06 16 12 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 13 C 0.10 1.10 6.34 -3.72 -0.02 1.07 16 14 N -0.62 -8.53 2.97 -172.77 -0.51 -9.05 16 15 C 0.53 9.79 7.72 -10.98 -0.08 9.71 16 16 O -0.52 -11.39 15.27 5.56 0.08 -11.30 16 17 C -0.12 -2.36 4.50 36.01 0.16 -2.19 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.53 13.97 55.49 0.78 -25.75 16 23 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.12 1.49 5.33 -3.70 -0.02 1.47 16 28 H 0.07 0.50 6.58 -51.93 -0.34 0.16 16 29 H 0.08 0.51 5.98 -51.93 -0.31 0.20 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 1.13 5.96 -51.93 -0.31 0.82 16 32 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.22 0.24 8.06 -52.48 -0.42 -0.18 16 35 H 0.07 0.48 6.19 -51.92 -0.32 0.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.98 5.93 -51.93 -0.31 0.68 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.74 7.69 -51.91 -0.40 1.34 16 42 H 0.10 1.78 7.94 -51.92 -0.41 1.37 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.32 5.38 -51.93 -0.28 1.04 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -35.28 371.88 -7.94 -43.22 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.49 Total: -1.63 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.43 Total: -44.53 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.28 Total: -10.17 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.28 -7.94 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.945 kcal (2) G-P(sol) polarization free energy of solvation -35.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds