Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00043 * 2 1 4 4 C 1.50696 * 109.47008 * 293.95182 * 3 2 1 5 5 C 1.41380 * 126.80347 * 94.99495 * 4 3 2 6 6 C 1.35451 * 103.98649 * 179.77327 * 5 4 3 7 7 O 1.34041 * 106.44823 * 0.22995 * 6 5 4 8 8 N 1.20916 * 111.56681 * 359.97438 * 7 6 5 9 9 C 1.46902 * 111.00011 * 123.94883 * 2 1 3 10 10 H 1.09003 * 109.50209 * 295.98305 * 9 2 1 11 11 C 1.53039 * 109.49501 * 56.05045 * 9 2 1 12 12 C 1.53049 * 109.53791 * 181.31568 * 11 9 2 13 13 C 1.53183 * 109.31182 * 298.63280 * 12 11 9 14 14 N 1.46923 * 108.77868 * 54.63465 * 13 12 11 15 15 C 1.34774 * 120.63558 * 126.36843 * 14 13 12 16 16 O 1.21282 * 120.00321 * 180.02562 * 15 14 13 17 17 C 1.50705 * 119.99901 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47082 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99555 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00388 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99602 * 180.02562 * 19 18 17 22 22 N 1.31634 * 119.99896 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00465 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.46917 * 90.00088 * 23 21 19 25 25 H 1.48497 * 109.47427 * 210.00443 * 23 21 19 26 26 H 1.48502 * 109.46715 * 330.00327 * 23 21 19 27 27 C 1.46935 * 118.73926 * 306.39227 * 14 13 12 28 28 H 1.08994 * 109.46927 * 60.00488 * 1 2 3 29 29 H 1.08997 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47040 * 300.00194 * 1 2 3 31 31 H 1.08999 * 109.47243 * 173.95472 * 3 2 1 32 32 H 1.08995 * 109.47218 * 53.94823 * 3 2 1 33 33 H 1.08002 * 128.00820 * 0.04548 * 5 4 3 34 34 H 1.08004 * 126.77929 * 180.22800 * 6 5 4 35 35 H 1.09009 * 109.45976 * 301.33272 * 11 9 2 36 36 H 1.08997 * 109.46705 * 61.29356 * 11 9 2 37 37 H 1.09001 * 109.49483 * 58.58151 * 12 11 9 38 38 H 1.09002 * 109.49743 * 178.67672 * 12 11 9 39 39 H 1.09005 * 109.58961 * 174.41932 * 13 12 11 40 40 H 1.09000 * 109.59058 * 294.70524 * 13 12 11 41 41 H 1.09006 * 109.47007 * 299.99818 * 17 15 14 42 42 H 1.08997 * 109.47086 * 59.99815 * 17 15 14 43 43 H 0.96997 * 120.00025 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58275 * 293.81937 * 27 14 13 45 45 H 1.08993 * 109.58517 * 173.39461 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 6 0.5191 2.8781 -1.5404 6 6 0.6501 3.2326 -2.8411 7 8 1.7626 2.6329 -3.2877 8 7 2.2938 1.9790 -2.4204 9 6 1.9955 -0.7659 1.1377 10 1 1.7056 -0.2795 2.0691 11 6 1.4263 -2.1861 1.1044 12 6 1.9484 -2.9750 2.3075 13 6 3.4757 -3.0643 2.2307 14 7 4.0237 -1.7060 2.1160 15 6 4.9670 -1.2712 2.9748 16 8 5.4111 -0.1475 2.8700 17 6 5.4701 -2.1815 4.0655 18 16 6.7223 -1.3155 5.0443 19 6 7.1232 -2.5741 6.2105 20 1 6.6263 -3.5318 6.1638 21 6 8.0770 -2.3342 7.1899 22 7 8.3770 -3.2746 8.0608 23 14 8.9361 -0.6775 7.2714 24 1 8.1642 0.2377 8.1498 25 1 10.3037 -0.8555 7.8219 26 1 9.0233 -0.0976 5.9071 27 6 3.5234 -0.8302 1.0476 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.0797 1.3444 0.1082 32 1 1.5611 1.9274 0.8308 33 1 -0.2570 3.1674 -0.8472 34 1 -0.0112 3.8723 -3.4068 35 1 0.3378 -2.1422 1.1436 36 1 1.7367 -2.6803 0.1838 37 1 1.6595 -2.4680 3.2281 38 1 1.5241 -3.9791 2.2960 39 1 3.8600 -3.5383 3.1340 40 1 3.7640 -3.6517 1.3589 41 1 4.6396 -2.4695 4.7102 42 1 5.9104 -3.0734 3.6201 43 1 9.0438 -3.1071 8.7451 44 1 3.8157 -1.2332 0.0779 45 1 3.9391 0.1699 1.1702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491908231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = 17.951379 kcal Electronic energy + Delta-G solvation = -26987.818452 eV Core-core repulsion = 23134.439967 eV Total energy + Delta-G solvation = -3853.378484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.88789 -41.42501 -39.55515 -37.45598 -35.05407 -34.68245 -33.40162 -32.56809 -32.15458 -30.16842 -29.13329 -27.87127 -26.34570 -25.41830 -24.06229 -23.40532 -21.78440 -21.42214 -20.45023 -19.57673 -18.69904 -18.55210 -18.33436 -17.26554 -17.04127 -16.89720 -16.50207 -16.33157 -15.92432 -15.61475 -15.45048 -15.09126 -14.93991 -14.82499 -14.50836 -14.32723 -14.11837 -13.70448 -13.64213 -13.49289 -13.35438 -13.03531 -12.96385 -12.79697 -12.64761 -12.50986 -12.09331 -11.94064 -11.87789 -11.82225 -11.55081 -11.18434 -11.06200 -10.98096 -10.53609 -10.53193 -9.77851 -9.48302 -9.02285 -8.52652 -6.23826 0.66673 0.94506 1.24138 1.29549 1.44096 1.46111 1.51798 1.97678 2.23656 2.50417 2.66224 2.85395 2.86293 3.20096 3.43535 3.63895 3.72748 3.83069 3.93871 4.02157 4.13650 4.16109 4.21308 4.26217 4.36499 4.36906 4.47438 4.52197 4.54795 4.61417 4.67001 4.75737 4.78530 4.83064 4.91444 4.95799 5.02925 5.13811 5.15674 5.31504 5.42182 5.69925 5.86156 5.94632 6.10407 6.20314 6.92553 7.01983 7.41372 8.59538 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018549 B = 0.002363 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.192240 B =11846.500373 C =12948.586063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.126 3.874 4 C 0.010 3.990 5 C -0.238 4.238 6 C -0.045 4.045 7 O 0.088 5.912 8 N -0.390 5.390 9 C 0.082 3.918 10 H 0.039 0.961 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.094 3.906 14 N -0.603 5.603 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.104 4.104 18 S -0.179 6.179 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.239 1.239 27 C 0.121 3.879 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.193 0.807 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.078 0.922 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.637 7.231 -21.640 33.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.003 4.003 4 C -0.149 4.149 5 C -0.260 4.260 6 C -0.126 4.126 7 O 0.022 5.978 8 N -0.095 5.095 9 C -0.027 4.027 10 H 0.057 0.943 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.028 4.028 14 N -0.337 5.337 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.254 4.254 18 S 0.047 5.953 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.183 1.183 26 H -0.163 1.163 27 C -0.002 4.002 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.210 0.790 34 H 0.278 0.722 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.602 7.936 -22.461 32.838 hybrid contribution -0.611 -0.142 1.869 1.972 sum -23.213 7.794 -20.592 31.994 Atomic orbital electron populations 1.22541 0.85264 1.03542 1.01214 1.61893 1.09655 1.11715 1.42820 1.20364 1.00714 0.88571 0.90625 1.23592 0.95155 1.00726 0.95413 1.23064 1.01448 1.03140 0.98327 1.26895 0.90394 0.99512 0.95768 1.84825 1.32403 1.46378 1.34219 1.73901 1.21855 1.14044 0.99662 1.21881 0.93338 0.96124 0.91376 0.94284 1.21645 1.01348 0.92285 0.99167 1.21916 0.93560 1.02629 0.98449 1.22142 0.95181 0.81251 1.04206 1.48033 1.39127 1.16053 1.30522 1.20086 0.78971 0.86899 0.81919 1.90671 1.58660 1.21755 1.73275 1.23261 1.02004 1.01750 0.98407 1.84766 1.50098 1.23819 1.36574 1.22424 1.27686 1.00813 1.16461 0.91733 1.25535 0.96099 1.00478 0.93800 1.70009 1.33067 1.34871 1.17324 0.85891 0.79324 0.80097 0.81209 1.18678 1.18270 1.16310 1.21574 0.93837 0.94933 0.89900 0.91086 0.89379 0.94585 0.90718 0.91384 0.78976 0.72242 0.89363 0.90351 0.91986 0.87297 0.89071 0.89165 0.86825 0.86948 0.91349 0.90421 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.97 127.69 1.15 1.42 16 2 N -0.54 -9.64 4.62 -901.17 -4.17 -13.81 16 3 C 0.13 2.52 5.37 85.56 0.46 2.98 16 4 C 0.01 0.19 6.01 43.57 0.26 0.46 16 5 C -0.24 -2.78 10.20 22.40 0.23 -2.55 16 6 C -0.04 -0.40 12.30 67.18 0.83 0.42 16 7 O 0.09 1.58 11.20 71.63 0.80 2.38 16 8 N -0.39 -9.19 12.07 -49.54 -0.60 -9.79 16 9 C 0.08 1.55 2.09 44.99 0.09 1.64 16 10 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 11 C -0.11 -1.45 4.86 30.62 0.15 -1.30 16 12 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 13 C 0.09 1.76 6.34 86.36 0.55 2.31 16 14 N -0.60 -16.28 2.97 -818.90 -2.43 -18.72 16 15 C 0.53 19.62 7.72 87.66 0.68 20.29 16 16 O -0.56 -25.46 15.27 -3.04 -0.05 -25.51 16 17 C -0.10 -4.01 4.50 71.24 0.32 -3.69 16 18 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 19 C -0.53 -30.73 10.04 67.95 0.68 -30.05 16 20 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 21 C 0.05 2.74 5.50 84.86 0.47 3.20 16 22 N -0.91 -55.69 13.97 21.65 0.30 -55.39 16 23 Si 0.91 45.42 27.74 68.60 1.90 47.33 16 24 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 27 C 0.12 3.02 5.33 86.36 0.46 3.48 16 28 H 0.07 0.88 6.58 -2.39 -0.02 0.86 16 29 H 0.09 0.89 5.98 -2.39 -0.01 0.88 16 30 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 1.84 5.96 -2.39 -0.01 1.83 16 32 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16 35 H 0.09 0.91 6.19 -2.38 -0.01 0.89 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.75 5.93 -2.38 -0.01 1.74 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 4.01 7.69 -2.39 -0.02 4.00 16 42 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 43 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 2.05 5.38 -2.39 -0.01 2.04 16 Total: -1.00 -79.32 371.88 2.19 -77.14 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.96 Total: 9.59 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.51 Total: -2.96 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -6.90 Total: -97.71 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.76 Total: -23.12 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -79.32 2.19 -77.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491908231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.090 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds