Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47081 * 2 1 4 4 C 1.46911 * 110.99924 * 59.18239 * 3 2 1 5 5 C 1.52995 * 109.47232 * 66.04508 * 4 3 2 6 6 N 1.46495 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99985 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.47184 * 119.99801 * 179.97438 * 7 6 5 10 10 C 1.36015 * 123.46327 * 359.97438 * 9 7 6 11 11 S 1.70443 * 110.81916 * 180.02562 * 10 9 7 12 12 C 1.75509 * 92.44690 * 0.02562 * 11 10 9 13 13 C 1.32771 * 110.57292 * 359.97438 * 12 11 10 14 14 C 1.50696 * 123.45863 * 179.73197 * 13 12 11 15 15 C 1.46895 * 111.00217 * 295.22838 * 3 2 1 16 16 C 1.50701 * 109.47215 * 288.23701 * 15 3 2 17 17 O 1.21294 * 119.99507 * 354.30144 * 16 15 3 18 18 N 1.34772 * 120.00377 * 174.30002 * 16 15 3 19 19 C 1.37094 * 120.00380 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99584 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00417 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47226 * 90.00003 * 23 21 19 25 25 H 1.48505 * 109.47040 * 209.99966 * 23 21 19 26 26 H 1.48500 * 109.47118 * 329.99899 * 23 21 19 27 27 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47526 * 299.98688 * 1 2 3 29 29 H 1.09004 * 109.46829 * 59.99011 * 1 2 3 30 30 H 1.08996 * 109.47206 * 239.99773 * 2 1 3 31 31 H 1.08996 * 109.46793 * 120.00150 * 2 1 3 32 32 H 1.08996 * 109.46683 * 306.04667 * 4 3 2 33 33 H 1.08995 * 109.46720 * 186.04589 * 4 3 2 34 34 H 1.08998 * 109.47532 * 59.99578 * 5 4 3 35 35 H 1.09006 * 109.47004 * 300.00088 * 5 4 3 36 36 H 0.97000 * 120.00040 * 359.97438 * 6 5 4 37 37 H 1.07997 * 124.59012 * 0.03932 * 10 9 7 38 38 H 1.07996 * 124.71604 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.47201 * 90.02498 * 14 13 12 40 40 H 1.09001 * 109.47414 * 210.02652 * 14 13 12 41 41 H 1.08996 * 109.47375 * 330.02654 * 14 13 12 42 42 H 1.08999 * 109.47515 * 48.24144 * 15 3 2 43 43 H 1.09004 * 109.47025 * 168.23699 * 15 3 2 44 44 H 0.97001 * 119.99568 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00163 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5327 2.1155 1.1779 5 6 2.1473 1.5121 2.4423 6 7 1.6613 2.2402 3.6169 7 6 2.0724 1.8821 4.8496 8 8 2.8466 0.9541 4.9867 9 6 1.5844 2.6140 6.0296 10 6 0.7194 3.6612 5.9579 11 16 0.3713 4.2670 7.5125 12 6 1.4135 3.0868 8.2879 13 6 1.9758 2.2948 7.3827 14 6 2.9298 1.1814 7.7309 15 6 1.6441 2.0761 -1.2406 16 6 2.4641 1.5369 -2.3841 17 8 3.3516 0.7383 -2.1702 18 7 2.2114 1.9419 -3.6445 19 6 2.9578 1.4518 -4.6847 20 1 3.7480 0.7407 -4.4943 21 6 2.6976 1.8698 -5.9841 22 7 1.7356 2.7346 -6.2158 23 14 3.7141 1.2013 -7.4015 24 1 3.0734 -0.0283 -7.9335 25 1 3.7953 2.2222 -8.4770 26 1 5.0816 0.8787 -6.9209 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5136 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 0.4467 2.0387 1.2295 33 1 1.8195 3.1641 1.0992 34 1 3.2334 1.5887 2.3907 35 1 1.8605 0.4634 2.5210 36 1 1.0441 2.9805 3.5075 37 1 0.3085 4.0553 5.0401 38 1 1.5751 3.0148 9.3533 39 1 2.3697 0.2607 7.8941 40 1 3.6347 1.0375 6.9120 41 1 3.4751 1.4406 8.6383 42 1 0.5858 1.9107 -1.4426 43 1 1.8305 3.1446 -1.1319 44 1 1.5019 2.5809 -3.8154 45 1 1.5542 3.0267 -7.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492932136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -33.503137 kcal Electronic energy + Delta-G solvation = -26240.957561 eV Core-core repulsion = 22385.347841 eV Total energy + Delta-G solvation = -3855.609720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24794 -38.93813 -37.59609 -36.97487 -34.90262 -33.82811 -31.75135 -31.23770 -30.30675 -29.38512 -27.92782 -26.24141 -24.69902 -24.29020 -23.41005 -21.12538 -20.54095 -19.13444 -18.86533 -18.12463 -17.79857 -17.19687 -16.23653 -16.19655 -15.81767 -15.41020 -14.93421 -14.70841 -14.47609 -14.20401 -13.85430 -13.68694 -13.56967 -13.31805 -13.25649 -13.05411 -12.97062 -12.86328 -12.37949 -12.17645 -12.14107 -11.87833 -11.67730 -11.49954 -11.40587 -11.26590 -11.12917 -10.94075 -10.46494 -10.38196 -10.20384 -10.00574 -9.46746 -9.34613 -9.20711 -8.70375 -8.46978 -7.95406 -7.86962 -6.40437 -3.80949 0.37100 1.14689 1.51785 1.65300 2.87075 3.11919 3.18720 3.27290 3.33575 3.93161 4.03444 4.24714 4.26846 4.62003 4.78093 4.82564 4.91549 4.99548 5.08863 5.23004 5.23506 5.30846 5.31553 5.38341 5.41564 5.51209 5.60045 5.64725 5.67174 5.81804 5.84367 5.90327 5.93172 6.04496 6.19554 6.24284 6.30033 6.31630 6.51531 7.18831 7.27518 7.32342 7.56652 8.01748 8.08153 8.63894 9.20199 9.56481 10.08859 10.77438 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.752937 B =15887.667173 C =16257.444722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.039 3.961 5 C 0.123 3.877 6 N -0.723 5.723 7 C 0.576 3.424 8 O -0.528 6.528 9 C -0.150 4.150 10 C -0.212 4.212 11 S 0.183 5.817 12 C -0.246 4.246 13 C -0.050 4.050 14 C -0.102 4.102 15 C 0.043 3.957 16 C 0.445 3.555 17 O -0.574 6.574 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.396 0.604 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 4.690 27.057 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.089 4.089 5 C 0.000 4.000 6 N -0.375 5.375 7 C 0.362 3.638 8 O -0.406 6.406 9 C -0.169 4.169 10 C -0.350 4.350 11 S 0.450 5.550 12 C -0.381 4.381 13 C -0.061 4.061 14 C -0.161 4.161 15 C -0.089 4.089 16 C 0.230 3.770 17 O -0.457 6.457 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.224 0.776 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.051 4.735 27.657 28.932 hybrid contribution -0.497 -0.443 -1.667 1.795 sum -7.548 4.292 25.990 27.402 Atomic orbital electron populations 1.22461 0.98963 1.02331 1.01536 1.22272 0.91867 0.89855 1.04097 1.61663 1.59144 1.02057 1.00112 1.22287 0.97629 0.98621 0.90399 1.21352 1.00332 0.95978 0.82353 1.45799 1.49119 1.36547 1.06073 1.17530 0.80804 0.83257 0.82250 1.90770 1.34759 1.29240 1.85819 1.20209 1.02847 0.99455 0.94357 1.25656 1.03528 1.01421 1.04420 1.83045 1.44287 1.32734 0.94904 1.25326 1.06340 1.02654 1.03748 1.19895 0.98277 0.97980 0.89924 1.20676 0.97873 0.94804 1.02723 1.21924 0.98029 0.98813 0.90098 1.19727 0.87447 0.86339 0.83496 1.90526 1.34255 1.37041 1.83917 1.41864 1.32941 1.40705 1.04883 1.19692 1.14408 1.23673 0.84872 0.87934 1.25248 0.97267 0.96752 0.98757 1.69611 1.30716 1.32067 1.22108 0.85866 0.80055 0.78261 0.80160 1.20471 1.20970 1.19414 0.92091 0.92912 0.92267 0.88771 0.90860 0.93950 0.90372 0.90033 0.90985 0.76949 0.81264 0.81400 0.90958 0.88794 0.91864 0.92841 0.89481 0.77593 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.26 37.16 0.34 -2.12 16 2 C 0.05 0.72 5.52 -3.83 -0.02 0.70 16 3 N -0.51 -8.01 4.31 -236.08 -1.02 -9.03 16 4 C 0.04 0.46 4.81 -3.82 -0.02 0.44 16 5 C 0.12 1.46 5.60 -4.05 -0.02 1.44 16 6 N -0.72 -7.13 5.52 -61.46 -0.34 -7.47 16 7 C 0.58 6.87 7.79 -12.62 -0.10 6.77 16 8 O -0.53 -8.05 14.21 5.25 0.07 -7.98 16 9 C -0.15 -1.47 5.98 -104.63 -0.63 -2.09 16 10 C -0.21 -1.49 10.38 29.93 0.31 -1.18 16 11 S 0.18 1.08 23.02 -107.50 -2.48 -1.40 16 12 C -0.25 -1.74 10.91 28.86 0.31 -1.43 16 13 C -0.05 -0.46 6.01 -104.06 -0.63 -1.09 16 14 C -0.10 -0.93 9.55 36.00 0.34 -0.58 16 15 C 0.04 0.73 5.34 -4.98 -0.03 0.70 16 16 C 0.44 10.35 7.36 -10.99 -0.08 10.27 16 17 O -0.57 -15.46 14.70 5.55 0.08 -15.38 16 18 N -0.57 -14.21 5.29 -10.97 -0.06 -14.27 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.58 6.26 -51.93 -0.33 0.26 16 29 H 0.06 0.80 6.30 -51.93 -0.33 0.47 16 30 H 0.09 1.78 6.54 -51.93 -0.34 1.44 16 31 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 32 H 0.04 0.43 5.97 -51.93 -0.31 0.12 16 33 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.40 2.72 6.97 -40.82 -0.28 2.43 16 37 H 0.17 0.75 7.01 -52.49 -0.37 0.38 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.07 6.02 -51.93 -0.31 0.76 16 41 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 42 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 43 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -33.37 378.43 -8.79 -42.16 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.02 Total: 11.45 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.45 Total: 3.90 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.69 Total: -54.51 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.48 Total: -1.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.37 -8.79 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492932136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.657 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds