Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47081 * 2 1 4 4 C 1.46911 * 110.99924 * 59.18239 * 3 2 1 5 5 C 1.52995 * 109.47232 * 66.04508 * 4 3 2 6 6 N 1.46495 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99985 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.47184 * 119.99801 * 179.97438 * 7 6 5 10 10 C 1.36015 * 123.46327 * 359.97438 * 9 7 6 11 11 S 1.70443 * 110.81916 * 180.02562 * 10 9 7 12 12 C 1.75509 * 92.44690 * 0.02562 * 11 10 9 13 13 C 1.32771 * 110.57292 * 359.97438 * 12 11 10 14 14 C 1.50696 * 123.45863 * 179.73197 * 13 12 11 15 15 C 1.46895 * 111.00217 * 295.22838 * 3 2 1 16 16 C 1.50701 * 109.47215 * 288.23701 * 15 3 2 17 17 O 1.21294 * 119.99507 * 354.30144 * 16 15 3 18 18 N 1.34772 * 120.00377 * 174.30002 * 16 15 3 19 19 C 1.37094 * 120.00380 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99584 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00417 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00202 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47226 * 90.00003 * 23 21 19 25 25 H 1.48505 * 109.47040 * 209.99966 * 23 21 19 26 26 H 1.48500 * 109.47118 * 329.99899 * 23 21 19 27 27 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47526 * 299.98688 * 1 2 3 29 29 H 1.09004 * 109.46829 * 59.99011 * 1 2 3 30 30 H 1.08996 * 109.47206 * 239.99773 * 2 1 3 31 31 H 1.08996 * 109.46793 * 120.00150 * 2 1 3 32 32 H 1.08996 * 109.46683 * 306.04667 * 4 3 2 33 33 H 1.08995 * 109.46720 * 186.04589 * 4 3 2 34 34 H 1.08998 * 109.47532 * 59.99578 * 5 4 3 35 35 H 1.09006 * 109.47004 * 300.00088 * 5 4 3 36 36 H 0.97000 * 120.00040 * 359.97438 * 6 5 4 37 37 H 1.07997 * 124.59012 * 0.03932 * 10 9 7 38 38 H 1.07996 * 124.71604 * 179.97438 * 12 11 10 39 39 H 1.09005 * 109.47201 * 90.02498 * 14 13 12 40 40 H 1.09001 * 109.47414 * 210.02652 * 14 13 12 41 41 H 1.08996 * 109.47375 * 330.02654 * 14 13 12 42 42 H 1.08999 * 109.47515 * 48.24144 * 15 3 2 43 43 H 1.09004 * 109.47025 * 168.23699 * 15 3 2 44 44 H 0.97001 * 119.99568 * 0.02562 * 18 16 15 45 45 H 0.96998 * 120.00163 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5327 2.1155 1.1779 5 6 2.1473 1.5121 2.4423 6 7 1.6613 2.2402 3.6169 7 6 2.0724 1.8821 4.8496 8 8 2.8466 0.9541 4.9867 9 6 1.5844 2.6140 6.0296 10 6 0.7194 3.6612 5.9579 11 16 0.3713 4.2670 7.5125 12 6 1.4135 3.0868 8.2879 13 6 1.9758 2.2948 7.3827 14 6 2.9298 1.1814 7.7309 15 6 1.6441 2.0761 -1.2406 16 6 2.4641 1.5369 -2.3841 17 8 3.3516 0.7383 -2.1702 18 7 2.2114 1.9419 -3.6445 19 6 2.9578 1.4518 -4.6847 20 1 3.7480 0.7407 -4.4943 21 6 2.6976 1.8698 -5.9841 22 7 1.7356 2.7346 -6.2158 23 14 3.7141 1.2013 -7.4015 24 1 3.0734 -0.0283 -7.9335 25 1 3.7953 2.2222 -8.4770 26 1 5.0816 0.8787 -6.9209 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5136 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 0.4467 2.0387 1.2295 33 1 1.8195 3.1641 1.0992 34 1 3.2334 1.5887 2.3907 35 1 1.8605 0.4634 2.5210 36 1 1.0441 2.9805 3.5075 37 1 0.3085 4.0553 5.0401 38 1 1.5751 3.0148 9.3533 39 1 2.3697 0.2607 7.8941 40 1 3.6347 1.0375 6.9120 41 1 3.4751 1.4406 8.6383 42 1 0.5858 1.9107 -1.4426 43 1 1.8305 3.1446 -1.1319 44 1 1.5019 2.5809 -3.8154 45 1 1.5542 3.0267 -7.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492932136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -58.518453 kcal Electronic energy + Delta-G solvation = -26242.042306 eV Core-core repulsion = 22385.347841 eV Total energy + Delta-G solvation = -3856.694465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10713 -40.45732 -38.74929 -38.02907 -36.03023 -35.70829 -33.25596 -32.46309 -31.43513 -30.49572 -28.64242 -27.66902 -26.02609 -25.44540 -24.41783 -21.93153 -21.78146 -20.69053 -19.86875 -19.69844 -18.65543 -18.00328 -17.64620 -17.27676 -17.14112 -16.54427 -16.41612 -16.03925 -15.73006 -15.40394 -15.03329 -14.87973 -14.61443 -14.44689 -14.26628 -14.08263 -13.92648 -13.65935 -13.53475 -13.42507 -13.05848 -13.01568 -12.98234 -12.81103 -12.74791 -12.51035 -12.40218 -12.17023 -12.09818 -11.82547 -11.67309 -11.41236 -10.91028 -10.29974 -10.19701 -9.97636 -9.84087 -9.23592 -9.15032 -8.44903 -5.92844 -0.20808 0.64888 0.97048 0.97484 1.38106 1.41709 1.54193 1.98609 2.10169 2.31034 2.31506 2.91302 3.22163 3.45202 3.72601 3.81868 3.97915 4.03393 4.15242 4.21546 4.28342 4.31899 4.40028 4.40765 4.49424 4.58141 4.60339 4.65257 4.72204 4.80855 4.85973 4.87819 4.98953 5.02573 5.11811 5.28712 5.33420 5.35590 5.42826 5.57842 5.88764 6.08987 6.19014 6.50807 6.64032 7.16182 7.19998 7.60396 8.17393 8.72468 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.001762 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.752937 B =15887.667173 C =16257.444722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 N -0.532 5.532 4 C 0.048 3.952 5 C 0.133 3.867 6 N -0.709 5.709 7 C 0.571 3.429 8 O -0.574 6.574 9 C -0.183 4.183 10 C -0.204 4.204 11 S 0.243 5.757 12 C -0.247 4.247 13 C -0.080 4.080 14 C -0.098 4.098 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.275 1.275 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.414 0.586 37 H 0.197 0.803 38 H 0.189 0.811 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 6.904 28.270 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.078 4.078 3 N -0.256 5.256 4 C -0.080 4.080 5 C 0.009 3.991 6 N -0.361 5.361 7 C 0.358 3.642 8 O -0.455 6.455 9 C -0.202 4.202 10 C -0.343 4.343 11 S 0.511 5.489 12 C -0.382 4.382 13 C -0.090 4.090 14 C -0.157 4.157 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.200 1.200 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.214 0.786 38 H 0.206 0.794 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.230 0.770 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.382 6.994 28.880 31.161 hybrid contribution 0.184 -1.077 -1.920 2.209 sum -9.198 5.917 26.961 29.095 Atomic orbital electron populations 1.22357 0.96422 1.03187 1.02276 1.22127 0.93908 0.89649 1.02150 1.61520 1.60672 1.02466 1.00927 1.22283 0.98957 0.98732 0.87981 1.21083 0.98824 0.95807 0.83436 1.45582 1.48980 1.36657 1.04928 1.17980 0.80115 0.82821 0.83244 1.90749 1.36890 1.31376 1.86513 1.20081 1.05277 1.01246 0.93594 1.26044 1.01745 0.99920 1.06592 1.82911 1.42203 1.30677 0.93124 1.25634 1.05707 1.02193 1.04654 1.19991 0.99532 0.98974 0.90528 1.20578 0.97607 0.95208 1.02337 1.21769 0.97741 0.99689 0.88194 1.20871 0.86993 0.84953 0.84317 1.90499 1.36291 1.38757 1.84710 1.41921 1.33080 1.41152 1.05236 1.19617 1.15159 1.24672 0.86552 0.90597 1.25983 0.98146 0.96716 1.00434 1.69663 1.31230 1.32271 1.22971 0.84967 0.78190 0.78106 0.77309 1.19726 1.19493 1.20017 0.91360 0.90478 0.92905 0.93193 0.90390 0.91256 0.88602 0.92785 0.92176 0.74860 0.78609 0.79396 0.91406 0.91746 0.90055 0.90542 0.86902 0.77016 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.34 9.26 71.98 0.67 -3.67 16 2 C 0.05 1.53 5.52 86.30 0.48 2.01 16 3 N -0.53 -16.39 4.31 -900.82 -3.88 -20.27 16 4 C 0.05 1.00 4.81 86.30 0.42 1.41 16 5 C 0.13 3.08 5.60 86.38 0.48 3.56 16 6 N -0.71 -13.05 5.52 -466.61 -2.58 -15.63 16 7 C 0.57 13.66 7.79 86.59 0.67 14.34 16 8 O -0.57 -18.57 14.21 -4.13 -0.06 -18.63 16 9 C -0.18 -3.40 5.98 -19.87 -0.12 -3.52 16 10 C -0.20 -2.27 10.38 67.30 0.70 -1.57 16 11 S 0.24 2.01 23.02 -56.49 -1.30 0.71 16 12 C -0.25 -2.95 10.91 66.64 0.73 -2.22 16 13 C -0.08 -1.43 6.01 -19.46 -0.12 -1.55 16 14 C -0.10 -1.87 9.55 71.23 0.68 -1.19 16 15 C 0.06 1.88 5.34 85.56 0.46 2.33 16 16 C 0.44 20.92 7.36 87.66 0.65 21.56 16 17 O -0.62 -34.64 14.70 -3.07 -0.05 -34.69 16 18 N -0.58 -29.41 5.29 -306.99 -1.62 -31.03 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 23 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.44 6.26 -2.39 -0.01 1.43 16 29 H 0.05 1.32 6.30 -2.38 -0.02 1.30 16 30 H 0.05 1.98 6.54 -2.39 -0.02 1.97 16 31 H 0.08 2.29 6.51 -2.39 -0.02 2.27 16 32 H 0.07 1.12 5.97 -2.39 -0.01 1.10 16 33 H 0.10 1.70 7.86 -2.39 -0.02 1.68 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.55 6.57 -2.38 -0.02 1.53 16 36 H 0.41 4.45 6.97 -92.71 -0.65 3.81 16 37 H 0.20 0.91 7.01 -2.91 -0.02 0.89 16 38 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.06 1.61 6.02 -2.39 -0.01 1.60 16 41 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 42 H 0.08 2.20 5.97 -2.39 -0.01 2.19 16 43 H 0.11 3.16 7.81 -2.39 -0.02 3.14 16 44 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -76.69 378.43 -0.53 -77.23 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.33 Total: 32.93 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.97 Total: 13.21 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -7.80 Total: -116.12 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.10 Total: -53.31 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.30 Total: 0.71 kcal Total: -76.69 -0.53 -77.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492932136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.709 kcal (2) G-P(sol) polarization free energy of solvation -76.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds