Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21693 * 120.00200 * 359.72115 * 7 6 5 9 9 C 1.46680 * 119.99703 * 179.72441 * 7 6 5 10 10 N 1.37655 * 126.23468 * 0.02562 * 9 7 6 11 11 H 0.96998 * 125.67336 * 359.97069 * 10 9 7 12 12 C 1.35525 * 108.64376 * 180.02562 * 10 9 7 13 13 C 1.35452 * 108.87395 * 359.97438 * 12 10 9 14 14 C 1.37866 * 126.23126 * 179.71115 * 9 7 6 15 15 C 1.50704 * 126.46098 * 0.02562 * 14 9 7 16 16 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 17 17 O 1.21287 * 119.99643 * 179.97438 * 16 3 2 18 18 C 1.50700 * 120.00245 * 359.97438 * 16 3 2 19 19 S 1.81000 * 109.47134 * 179.97438 * 18 16 3 20 20 C 1.76200 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47006 * 59.99926 * 24 22 20 26 26 H 1.48497 * 109.47234 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47151 * 300.00375 * 24 22 20 28 28 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 30 30 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 31 31 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 32 32 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 33 33 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 34 34 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 35 35 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 36 36 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 37 37 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 38 38 H 1.08004 * 125.56600 * 180.02562 * 12 10 9 39 39 H 1.08005 * 126.06552 * 180.02562 * 13 12 10 40 40 H 1.09006 * 109.46972 * 89.99844 * 15 14 9 41 41 H 1.08993 * 109.47246 * 209.99904 * 15 14 9 42 42 H 1.09001 * 109.46620 * 330.00363 * 15 14 9 43 43 H 1.08996 * 109.47045 * 299.99944 * 18 16 3 44 44 H 1.08998 * 109.47351 * 60.00086 * 18 16 3 45 45 H 0.97004 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8532 4.2500 3.0388 9 6 0.4842 4.8712 4.8396 10 7 1.6665 4.8841 5.5445 11 1 2.4866 4.4376 5.2819 12 6 1.4935 5.6233 6.6671 13 6 0.2208 6.0860 6.6953 14 6 -0.4286 5.6254 5.5456 15 6 -1.8583 5.8981 5.1547 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9922 1.3060 -2.4723 19 16 2.3834 2.4153 -3.8480 20 6 2.0115 1.3587 -5.2082 21 1 1.6571 0.3542 -5.0305 22 6 2.1731 1.8179 -6.5081 23 7 2.6046 3.0424 -6.7246 24 14 1.7782 0.6980 -7.9501 25 1 0.3503 0.2946 -7.8869 26 1 2.0320 1.4209 -9.2222 27 1 2.6375 -0.5114 -7.8874 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0643 2.7985 1.1384 34 1 2.5506 1.3451 2.0284 35 1 0.1855 2.0664 1.8407 36 1 0.6994 3.5197 0.9508 37 1 2.1042 3.4312 3.3998 38 1 2.2476 5.8133 7.4166 39 1 -0.2139 6.7049 7.4663 40 1 -2.5027 5.1235 5.5705 41 1 -2.1619 6.8704 5.5427 42 1 -1.9442 5.8975 4.0680 43 1 2.6227 0.4188 -2.5299 44 1 0.9444 1.0115 -2.5303 45 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496728493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -30.687552 kcal Electronic energy + Delta-G solvation = -26209.615961 eV Core-core repulsion = 22354.128334 eV Total energy + Delta-G solvation = -3855.487627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.65056 -39.87577 -39.10010 -36.24990 -35.03031 -32.81767 -32.43899 -31.52248 -30.21993 -29.73184 -28.08537 -26.88588 -25.49525 -23.56562 -23.38459 -22.19588 -20.96069 -19.80421 -19.14079 -18.78794 -17.74346 -16.88221 -16.33799 -16.11061 -15.77285 -15.60321 -15.06334 -14.81205 -14.59646 -14.13116 -13.99829 -13.90795 -13.84004 -13.55515 -13.34502 -13.24104 -13.04871 -12.86141 -12.58325 -12.51401 -12.36313 -11.91471 -11.88517 -11.81775 -11.54019 -11.08058 -11.05325 -11.01943 -10.77257 -10.21205 -9.83132 -9.45898 -9.37909 -9.10549 -9.06809 -8.74521 -8.46758 -8.24931 -6.51752 -6.22396 -3.93415 1.17223 2.41605 2.53995 2.74596 2.96632 3.09426 3.15143 3.22850 3.26680 3.29402 3.58650 4.19262 4.51916 4.59362 4.65500 4.73561 4.84299 4.89942 4.99557 5.02654 5.12401 5.16164 5.18075 5.31571 5.49548 5.50393 5.57526 5.61677 5.68219 5.73505 5.75088 5.85558 5.88372 5.89138 6.01925 6.04586 6.16747 6.22030 6.39417 6.55398 6.64020 6.99648 7.21582 7.41130 7.58327 7.94313 8.33966 8.46118 9.22697 10.84952 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001979 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.499588 B =14147.701047 C =14422.989672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.618 5.618 4 C 0.109 3.891 5 C 0.103 3.897 6 N -0.729 5.729 7 C 0.589 3.411 8 O -0.521 6.521 9 C -0.061 4.061 10 N -0.542 5.542 11 H 0.415 0.585 12 C 0.026 3.974 13 C -0.213 4.213 14 C -0.072 4.072 15 C -0.092 4.092 16 C 0.535 3.465 17 O -0.512 6.512 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.392 0.608 38 H 0.171 0.829 39 H 0.143 0.857 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -2.330 28.472 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.022 4.022 6 N -0.381 5.381 7 C 0.376 3.624 8 O -0.397 6.397 9 C -0.173 4.173 10 N -0.138 5.138 11 H 0.253 0.747 12 C -0.110 4.110 13 C -0.237 4.237 14 C -0.081 4.081 15 C -0.149 4.149 16 C 0.323 3.677 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.225 0.775 38 H 0.188 0.812 39 H 0.161 0.839 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.524 -0.552 27.807 27.854 hybrid contribution 0.202 -2.325 -0.696 2.435 sum -1.322 -2.877 27.110 27.294 Atomic orbital electron populations 1.22323 0.95813 1.02400 1.03001 1.21600 0.94637 0.82034 1.03369 1.47894 1.68147 1.14351 1.05004 1.21437 0.96954 0.97173 0.85953 1.21915 0.98579 0.96825 0.84853 1.45733 1.14295 1.53342 1.24739 1.17022 0.84399 0.78198 0.82765 1.90843 1.23518 1.61365 1.63970 1.20223 0.87916 1.11732 0.97430 1.41936 1.11600 1.41341 1.18936 0.74744 1.22010 0.99109 0.98699 0.91187 1.20829 0.94200 1.08085 1.00590 1.20000 0.96082 0.97653 0.94339 1.20367 0.90313 1.00933 1.03299 1.20419 0.76193 0.86491 0.84607 1.90709 1.43682 1.17377 1.86740 1.23582 1.04916 1.04527 0.97051 1.85410 1.86857 1.17867 0.93352 1.22807 1.51994 1.01400 0.92174 0.90970 1.24994 0.94648 0.95554 0.98381 1.70007 1.42844 1.15600 1.21785 0.86225 0.78976 0.80009 0.80297 1.19913 1.20805 1.19944 0.91454 0.92278 0.91712 0.89638 0.90573 0.89256 0.90369 0.90847 0.90366 0.77472 0.81159 0.83923 0.91502 0.91932 0.90027 0.89205 0.89059 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 10.24 37.15 0.38 -1.36 16 2 C 0.11 1.06 5.98 -4.04 -0.02 1.03 16 3 N -0.62 -8.05 2.47 -173.69 -0.43 -8.48 16 4 C 0.11 1.14 5.56 -4.04 -0.02 1.12 16 5 C 0.10 1.19 6.00 -4.04 -0.02 1.16 16 6 N -0.73 -7.04 5.55 -61.61 -0.34 -7.38 16 7 C 0.59 7.23 7.79 -12.85 -0.10 7.13 16 8 O -0.52 -8.34 14.80 5.20 0.08 -8.26 16 9 C -0.06 -0.63 7.06 -81.98 -0.58 -1.21 16 10 N -0.54 -3.54 5.99 -9.39 -0.06 -3.60 16 11 H 0.42 1.38 8.19 -40.82 -0.33 1.05 16 12 C 0.03 0.16 11.89 -16.92 -0.20 -0.05 16 13 C -0.21 -1.71 10.76 -39.98 -0.43 -2.14 16 14 C -0.07 -0.76 6.21 -104.16 -0.65 -1.41 16 15 C -0.09 -0.94 9.83 36.01 0.35 -0.59 16 16 C 0.53 9.80 7.69 -10.99 -0.08 9.72 16 17 O -0.51 -11.34 15.44 5.55 0.09 -11.25 16 18 C -0.15 -2.99 4.71 36.01 0.17 -2.83 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.57 6.26 -51.93 -0.33 0.25 16 30 H 0.06 0.77 7.22 -51.93 -0.38 0.40 16 31 H 0.09 0.87 6.44 -51.93 -0.33 0.54 16 32 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 33 H 0.09 1.05 7.42 -51.93 -0.39 0.66 16 34 H 0.08 0.55 7.89 -51.93 -0.41 0.14 16 35 H 0.07 0.85 6.26 -51.92 -0.33 0.53 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 2.41 7.60 -40.82 -0.31 2.10 16 38 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.01 6.49 -51.93 -0.34 0.67 16 43 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 44 H 0.09 1.71 7.19 -51.92 -0.37 1.33 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -37.84 388.69 -8.70 -46.55 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.38 Total: 1.79 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.01 Total: -2.27 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.09 Total: -44.86 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.16 Total: -19.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.84 -8.70 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496728493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.858 kcal (2) G-P(sol) polarization free energy of solvation -37.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds