Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47216 * 2 1 4 4 C 1.46499 * 120.00012 * 90.00076 * 3 2 1 5 5 C 1.53004 * 109.47198 * 270.00064 * 4 3 2 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21693 * 120.00200 * 359.72115 * 7 6 5 9 9 C 1.46680 * 119.99703 * 179.72441 * 7 6 5 10 10 N 1.37655 * 126.23468 * 0.02562 * 9 7 6 11 11 H 0.96998 * 125.67336 * 359.97069 * 10 9 7 12 12 C 1.35525 * 108.64376 * 180.02562 * 10 9 7 13 13 C 1.35452 * 108.87395 * 359.97438 * 12 10 9 14 14 C 1.37866 * 126.23126 * 179.71115 * 9 7 6 15 15 C 1.50704 * 126.46098 * 0.02562 * 14 9 7 16 16 C 1.34773 * 119.99855 * 270.00208 * 3 2 1 17 17 O 1.21287 * 119.99643 * 179.97438 * 16 3 2 18 18 C 1.50700 * 120.00245 * 359.97438 * 16 3 2 19 19 S 1.81000 * 109.47134 * 179.97438 * 18 16 3 20 20 C 1.76200 * 99.99948 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99825 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99706 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.47006 * 59.99926 * 24 22 20 26 26 H 1.48497 * 109.47234 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47151 * 300.00375 * 24 22 20 28 28 H 1.09002 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47207 * 300.00256 * 1 2 3 30 30 H 1.09000 * 109.47106 * 59.99699 * 1 2 3 31 31 H 1.09000 * 109.47343 * 240.00279 * 2 1 3 32 32 H 1.08993 * 109.47392 * 120.00042 * 2 1 3 33 33 H 1.08995 * 109.47424 * 150.00425 * 4 3 2 34 34 H 1.09006 * 109.46868 * 29.99976 * 4 3 2 35 35 H 1.09009 * 109.46730 * 59.99787 * 5 4 3 36 36 H 1.08998 * 109.46846 * 300.00332 * 5 4 3 37 37 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 38 38 H 1.08004 * 125.56600 * 180.02562 * 12 10 9 39 39 H 1.08005 * 126.06552 * 180.02562 * 13 12 10 40 40 H 1.09006 * 109.46972 * 89.99844 * 15 14 9 41 41 H 1.08993 * 109.47246 * 209.99904 * 15 14 9 42 42 H 1.09001 * 109.46620 * 330.00363 * 15 14 9 43 43 H 1.08996 * 109.47045 * 299.99944 * 18 16 3 44 44 H 1.08998 * 109.47351 * 60.00086 * 18 16 3 45 45 H 0.97004 * 119.99709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7931 1.7104 6 7 1.2315 3.4832 2.9795 7 6 0.2417 4.1852 3.5659 8 8 -0.8532 4.2500 3.0388 9 6 0.4842 4.8712 4.8396 10 7 1.6665 4.8841 5.5445 11 1 2.4866 4.4376 5.2819 12 6 1.4935 5.6233 6.6671 13 6 0.2208 6.0860 6.6953 14 6 -0.4286 5.6254 5.5456 15 6 -1.8583 5.8981 5.1547 16 6 2.2429 2.0166 -1.1672 17 8 2.6468 3.1602 -1.1671 18 6 1.9922 1.3060 -2.4723 19 16 2.3834 2.4153 -3.8480 20 6 2.0115 1.3587 -5.2082 21 1 1.6571 0.3542 -5.0305 22 6 2.1731 1.8179 -6.5081 23 7 2.6046 3.0424 -6.7246 24 14 1.7782 0.6980 -7.9501 25 1 0.3503 0.2946 -7.8869 26 1 2.0320 1.4209 -9.2222 27 1 2.6375 -0.5114 -7.8874 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.0643 2.7985 1.1384 34 1 2.5506 1.3451 2.0284 35 1 0.1855 2.0664 1.8407 36 1 0.6994 3.5197 0.9508 37 1 2.1042 3.4312 3.3998 38 1 2.2476 5.8133 7.4166 39 1 -0.2139 6.7049 7.4663 40 1 -2.5027 5.1235 5.5705 41 1 -2.1619 6.8704 5.5427 42 1 -1.9442 5.8975 4.0680 43 1 2.6227 0.4188 -2.5299 44 1 0.9444 1.0115 -2.5303 45 1 2.7171 3.3634 -7.6331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496728493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -58.355576 kcal Electronic energy + Delta-G solvation = -26210.815737 eV Core-core repulsion = 22354.128334 eV Total energy + Delta-G solvation = -3856.687402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30864 -41.10672 -40.09004 -37.46619 -36.03427 -34.59668 -33.52071 -32.48759 -31.22408 -30.78718 -29.14142 -27.78379 -27.57017 -24.55323 -24.30527 -23.01981 -21.63182 -20.85106 -20.18308 -19.63733 -19.44427 -18.25849 -17.39338 -17.02977 -16.89029 -16.78185 -16.60428 -16.26752 -15.77627 -15.46870 -14.98060 -14.87065 -14.68910 -14.59959 -14.47342 -14.32319 -14.20449 -13.86294 -13.61480 -13.50136 -13.25861 -13.19136 -13.11478 -12.87624 -12.75789 -12.65695 -12.57009 -12.43161 -11.93552 -11.73179 -11.21721 -11.13750 -10.92945 -10.34289 -10.28743 -9.88637 -9.70531 -9.13492 -8.68927 -8.35542 -6.14178 0.42162 1.21592 1.41101 1.43035 1.49505 1.54503 1.80932 1.82687 2.18817 2.26210 2.28922 2.36761 2.98485 3.23412 3.62239 3.73166 3.89532 3.95531 4.07398 4.18466 4.23437 4.26283 4.28991 4.36675 4.40132 4.46315 4.56826 4.69568 4.73086 4.85506 4.86116 4.91951 4.97468 4.99386 5.11978 5.20411 5.35519 5.40305 5.44283 5.54917 5.74772 5.95476 6.17737 6.19875 6.39399 6.61877 7.05368 7.06173 7.09292 8.73440 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001979 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.499588 B =14147.701047 C =14422.989672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.112 3.888 5 C 0.113 3.887 6 N -0.713 5.713 7 C 0.583 3.417 8 O -0.571 6.571 9 C -0.090 4.090 10 N -0.527 5.527 11 H 0.432 0.568 12 C 0.054 3.946 13 C -0.232 4.232 14 C -0.096 4.096 15 C -0.090 4.090 16 C 0.533 3.467 17 O -0.561 6.561 18 C -0.124 4.124 19 S -0.155 6.155 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.260 1.260 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.412 0.588 38 H 0.216 0.784 39 H 0.159 0.841 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -4.917 31.086 31.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.022 4.022 3 N -0.337 5.337 4 C -0.011 4.011 5 C -0.012 4.012 6 N -0.366 5.366 7 C 0.373 3.627 8 O -0.451 6.451 9 C -0.202 4.202 10 N -0.125 5.125 11 H 0.272 0.728 12 C -0.083 4.083 13 C -0.256 4.256 14 C -0.105 4.105 15 C -0.147 4.147 16 C 0.321 3.679 17 O -0.439 6.439 18 C -0.275 4.275 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.188 1.188 26 H -0.204 1.204 27 H -0.184 1.184 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.249 0.751 38 H 0.233 0.767 39 H 0.177 0.823 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.443 -3.201 30.473 30.644 hybrid contribution -0.133 -1.519 -1.292 1.998 sum -0.575 -4.720 29.181 29.566 Atomic orbital electron populations 1.22296 0.95777 1.03570 1.01618 1.21961 0.94601 0.80060 1.05616 1.47865 1.66199 1.15416 1.04179 1.21635 0.95703 0.98125 0.85641 1.21665 0.99349 0.95732 0.84474 1.45504 1.14852 1.52417 1.23786 1.17401 0.84007 0.77990 0.83340 1.90814 1.25563 1.63231 1.65467 1.19916 0.89741 1.13169 0.97397 1.41919 1.11075 1.40976 1.18514 0.72824 1.22725 0.99150 0.95789 0.90684 1.21119 0.95109 1.09047 1.00330 1.20296 0.96171 0.98304 0.95720 1.20305 0.91186 1.01875 1.01354 1.20178 0.76260 0.85866 0.85633 1.90692 1.46361 1.19339 1.87479 1.23401 1.05886 1.03214 0.94988 1.85589 1.87593 1.22179 0.97424 1.23150 1.51892 1.01683 0.92577 0.89859 1.26149 0.94162 0.97194 1.01736 1.70182 1.44200 1.17865 1.22519 0.85002 0.79281 0.77869 0.75843 1.18761 1.20432 1.18408 0.88987 0.92255 0.94543 0.89567 0.86186 0.90396 0.85101 0.90600 0.95112 0.75149 0.76714 0.82295 0.91478 0.90346 0.92975 0.87047 0.87847 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.10 1.64 5.98 86.38 0.52 2.16 16 3 N -0.60 -14.78 2.47 -821.81 -2.03 -16.81 16 4 C 0.11 2.13 5.56 86.38 0.48 2.61 16 5 C 0.11 2.62 6.00 86.38 0.52 3.13 16 6 N -0.71 -13.40 5.55 -467.06 -2.59 -15.99 16 7 C 0.58 14.76 7.79 86.45 0.67 15.43 16 8 O -0.57 -19.65 14.80 -4.33 -0.06 -19.71 16 9 C -0.09 -1.81 7.06 40.35 0.28 -1.53 16 10 N -0.53 -5.51 5.99 -183.62 -1.10 -6.61 16 11 H 0.43 1.45 8.19 -92.71 -0.76 0.69 16 12 C 0.05 0.45 11.89 83.48 0.99 1.45 16 13 C -0.23 -3.24 10.76 22.01 0.24 -3.01 16 14 C -0.10 -2.00 6.21 -19.56 -0.12 -2.12 16 15 C -0.09 -1.95 9.83 71.24 0.70 -1.25 16 16 C 0.53 19.74 7.69 87.66 0.67 20.41 16 17 O -0.56 -25.97 15.44 -3.05 -0.05 -26.02 16 18 C -0.12 -4.96 4.71 71.24 0.34 -4.63 16 19 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 20 C -0.55 -31.31 9.50 67.96 0.65 -30.66 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.71 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 24 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.05 6.26 -2.39 -0.01 1.03 16 30 H 0.04 0.84 7.22 -2.39 -0.02 0.83 16 31 H 0.09 1.47 6.44 -2.39 -0.02 1.46 16 32 H 0.12 1.06 7.89 -2.39 -0.02 1.04 16 33 H 0.08 1.74 7.42 -2.39 -0.02 1.72 16 34 H 0.13 1.21 7.89 -2.38 -0.02 1.19 16 35 H 0.08 1.73 6.26 -2.38 -0.01 1.71 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.41 4.25 7.60 -92.71 -0.70 3.55 16 38 H 0.22 -0.15 8.06 -2.91 -0.02 -0.18 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.43 6.49 -2.39 -0.02 1.41 16 43 H 0.11 3.95 7.40 -2.40 -0.02 3.93 16 44 H 0.10 3.87 7.19 -2.40 -0.02 3.85 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -90.22 388.69 2.02 -88.20 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.43 Total: 16.40 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 7.14 Total: 0.84 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -5.44 Total: -95.63 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.11 Total: -45.73 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -90.22 2.02 -88.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496728493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.842 kcal (2) G-P(sol) polarization free energy of solvation -90.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds