Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46539 * 2 1 4 4 C 1.46502 * 119.99999 * 93.84663 * 3 2 1 5 5 C 1.53006 * 109.46690 * 269.99788 * 4 3 2 6 6 N 1.46502 * 109.46690 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99482 * 179.72594 * 6 5 4 8 8 H 1.07993 * 120.00317 * 0.27093 * 7 6 5 9 9 C 1.38819 * 119.99766 * 180.27768 * 7 6 5 10 10 N 1.31618 * 119.99827 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46737 * 59.99680 * 11 9 7 13 13 H 1.48497 * 109.47212 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47174 * 299.99934 * 11 9 7 15 15 C 1.34773 * 120.00416 * 273.83971 * 3 2 1 16 16 O 1.21679 * 120.00353 * 175.47802 * 15 3 2 17 17 C 1.46689 * 119.99651 * 355.48140 * 15 3 2 18 18 C 1.35662 * 126.12874 * 186.95601 * 17 15 3 19 19 N 1.30947 * 114.18863 * 179.78432 * 18 17 15 20 20 C 1.29429 * 117.36209 * 0.52257 * 19 18 17 21 21 C 1.50707 * 124.80319 * 179.73407 * 20 19 18 22 22 H 1.08993 * 109.86697 * 164.27412 * 21 20 19 23 23 C 1.54104 * 109.87468 * 285.27888 * 21 20 19 24 24 C 1.54807 * 104.18765 * 121.45326 * 23 21 20 25 25 C 1.54999 * 102.09292 * 20.88109 * 24 23 21 26 26 O 1.43745 * 109.88002 * 43.26164 * 21 20 19 27 27 S 1.70955 * 110.39521 * 359.70788 * 20 19 18 28 28 H 1.09002 * 109.47324 * 60.00456 * 1 2 3 29 29 H 1.09007 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47487 * 299.99885 * 1 2 3 31 31 H 1.08991 * 109.47487 * 240.00115 * 2 1 3 32 32 H 1.09002 * 109.47324 * 119.99544 * 2 1 3 33 33 H 1.08994 * 109.47452 * 149.99722 * 4 3 2 34 34 H 1.09002 * 109.47295 * 29.99523 * 4 3 2 35 35 H 1.08999 * 109.46911 * 60.00143 * 5 4 3 36 36 H 1.09002 * 109.47035 * 299.99894 * 5 4 3 37 37 H 0.96999 * 120.00166 * 0.02562 * 6 5 4 38 38 H 0.96997 * 119.99466 * 180.02562 * 10 9 7 39 39 H 1.08001 * 122.90627 * 359.95816 * 18 17 15 40 40 H 1.09004 * 110.48677 * 240.13270 * 23 21 20 41 41 H 1.09002 * 110.48669 * 2.77669 * 23 21 20 42 42 H 1.08999 * 110.91000 * 139.07541 * 24 23 21 43 43 H 1.08994 * 110.91012 * 262.64915 * 24 23 21 44 44 H 1.08996 * 110.61880 * 81.47383 * 25 24 23 45 45 H 1.09001 * 110.62016 * 204.47804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3425 2.0436 1.2659 5 6 1.0984 2.7538 1.8032 6 7 1.4229 3.4166 3.0688 7 6 0.4603 4.1252 3.7370 8 1 -0.5391 4.1918 3.3333 9 6 0.7692 4.7581 4.9333 10 7 1.9872 4.6766 5.4255 11 14 -0.5437 5.7253 5.8445 12 1 -1.6689 4.8224 6.1963 13 1 0.0362 6.2996 7.0851 14 1 -1.0421 6.8223 4.9766 15 6 2.1691 2.0428 -1.1645 16 8 2.4954 3.2150 -1.1606 17 6 1.9399 1.3495 -2.4368 18 6 2.1814 1.8491 -3.6747 19 7 1.8948 1.0250 -4.6511 20 6 1.4175 -0.1345 -4.3302 21 6 1.0262 -1.2061 -5.3150 22 1 0.9226 -2.1616 -4.8009 23 6 -0.3041 -0.8309 -5.9965 24 6 0.0412 -0.7880 -7.5049 25 6 1.3290 -1.6484 -7.5678 26 8 2.0230 -1.3108 -6.3453 27 16 1.2945 -0.2786 -2.6312 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.1350 2.7736 1.1015 34 1 2.6776 1.3004 1.9894 35 1 0.3059 2.0237 1.9677 36 1 0.7633 3.4970 1.0797 37 1 2.3207 3.3571 3.4312 38 1 2.2029 5.1185 6.2616 39 1 2.5785 2.8397 -3.8405 40 1 -1.0610 -1.5901 -5.7997 41 1 -0.6451 0.1466 -5.6552 42 1 -0.7552 -1.2359 -8.0992 43 1 0.2391 0.2334 -7.8298 44 1 1.0810 -2.7096 -7.5855 45 1 1.9287 -1.3787 -8.4371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497463159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -7.468638 kcal Electronic energy + Delta-G solvation = -26830.297228 eV Core-core repulsion = 22975.816449 eV Total energy + Delta-G solvation = -3854.480779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54292 -39.97682 -38.93708 -36.35144 -34.65410 -32.71172 -32.15816 -31.47039 -30.54170 -29.45520 -27.60441 -25.74718 -24.04481 -23.70154 -23.05089 -21.97517 -21.70652 -20.81696 -19.15718 -18.63318 -17.26503 -17.16001 -16.77650 -16.52443 -15.75862 -15.49660 -15.39272 -14.92195 -14.64165 -14.38878 -14.21211 -14.07501 -13.73495 -13.64268 -13.36919 -13.23701 -13.04967 -12.78235 -12.24189 -12.21523 -12.02957 -11.91586 -11.72327 -11.54086 -11.27159 -11.25690 -10.99400 -10.89368 -10.66003 -10.32649 -10.16567 -10.07657 -9.74487 -9.66794 -9.45800 -9.13967 -8.86064 -8.64299 -6.93152 -5.75734 -3.05068 0.01994 0.90916 1.33383 2.30969 2.85671 3.11664 3.45314 3.47138 3.49548 3.50890 3.68869 4.13751 4.29640 4.32646 4.42201 4.58538 4.58958 4.62996 4.78006 4.91394 4.98743 5.08385 5.13119 5.15148 5.24676 5.31884 5.46556 5.48242 5.50509 5.57216 5.61730 5.63394 5.75056 5.90541 5.97580 6.00094 6.12417 6.34248 6.48943 6.72867 6.86763 7.27523 7.48914 7.70166 8.07318 8.42631 9.53544 10.09202 10.44279 11.47023 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.002142 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.022897 B =13067.867231 C =13158.750182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.100 3.900 3 N -0.602 5.602 4 C 0.111 3.889 5 C 0.142 3.858 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.591 3.409 16 O -0.513 6.513 17 C -0.288 4.288 18 C 0.118 3.882 19 N -0.459 5.459 20 C 0.008 3.992 21 C 0.155 3.845 22 H 0.091 0.909 23 C -0.143 4.143 24 C -0.151 4.151 25 C 0.045 3.955 26 O -0.355 6.355 27 S 0.216 5.784 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.188 0.812 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 -19.710 -24.727 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 N -0.335 5.335 4 C -0.011 4.011 5 C 0.013 3.987 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.377 3.623 16 O -0.390 6.390 17 C -0.412 4.412 18 C -0.040 4.040 19 N -0.173 5.173 20 C -0.266 4.266 21 C 0.094 3.906 22 H 0.108 0.892 23 C -0.183 4.183 24 C -0.189 4.189 25 C -0.032 4.032 26 O -0.273 6.273 27 S 0.475 5.525 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.205 0.795 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.413 -19.691 -24.554 31.659 hybrid contribution -0.268 1.345 0.461 1.447 sum -3.681 -18.345 -24.094 30.506 Atomic orbital electron populations 1.22458 0.94658 1.03044 1.03852 1.21908 0.95717 0.82778 1.02129 1.47793 1.65417 1.13683 1.06558 1.21810 0.99589 0.97412 0.82296 1.20974 0.93928 0.94623 0.89128 1.42200 1.12356 1.61491 1.21431 1.19148 0.91889 1.24025 1.01930 0.91262 1.24754 0.96711 1.01244 0.98263 1.69649 1.18315 1.48478 1.21719 0.86234 0.80710 0.79937 0.79105 1.21272 1.21639 1.21227 1.16793 0.77858 0.85901 0.81775 1.90891 1.47085 1.14570 1.86420 1.25913 1.16114 0.99515 0.99699 1.22227 0.96369 1.00259 0.85114 1.66217 1.13347 1.01932 1.35822 1.28047 1.01386 0.96752 1.00404 1.21194 0.88445 0.93215 0.87778 0.89168 1.22981 0.96077 1.03667 0.95527 1.23112 0.98116 1.01938 0.95719 1.23650 0.93140 0.98312 0.88057 1.89057 1.29576 1.90975 1.17688 1.84425 1.57285 1.11733 0.99053 0.92143 0.90768 0.90363 0.91217 0.88139 0.89409 0.90026 0.96129 0.95792 0.78254 0.93426 0.79544 0.89651 0.89835 0.89872 0.89981 0.91829 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.24 37.16 0.34 -1.39 16 2 C 0.10 1.02 5.70 -4.04 -0.02 0.99 16 3 N -0.60 -8.60 2.48 -175.23 -0.43 -9.04 16 4 C 0.11 1.87 5.53 -4.04 -0.02 1.85 16 5 C 0.14 2.96 6.58 -4.04 -0.03 2.94 16 6 N -0.73 -18.93 5.60 -59.90 -0.34 -19.27 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 11 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.59 9.41 7.61 -12.85 -0.10 9.31 16 16 O -0.51 -10.19 16.50 5.21 0.09 -10.10 16 17 C -0.29 -3.77 6.29 -37.09 -0.23 -4.00 16 18 C 0.12 1.55 11.10 -18.85 -0.21 1.34 16 19 N -0.46 -5.90 10.48 -11.50 -0.12 -6.02 16 20 C 0.01 0.08 6.08 -13.29 -0.08 0.00 16 21 C 0.16 1.27 3.93 -27.30 -0.11 1.16 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 C -0.14 -0.90 6.63 -25.20 -0.17 -1.07 16 24 C -0.15 -0.84 7.16 -24.72 -0.18 -1.02 16 25 C 0.05 0.28 7.72 38.21 0.29 0.57 16 26 O -0.35 -3.54 11.17 -35.23 -0.39 -3.94 16 27 S 0.22 1.99 16.27 -107.50 -1.75 0.24 16 28 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.08 0.90 6.53 -51.93 -0.34 0.57 16 31 H 0.07 0.63 3.85 -19.62 -0.08 0.55 16 32 H 0.10 0.87 7.85 -51.93 -0.41 0.46 16 33 H 0.09 1.64 7.49 -51.93 -0.39 1.26 16 34 H 0.08 1.23 7.87 -51.93 -0.41 0.82 16 35 H 0.02 0.42 6.53 -51.93 -0.34 0.08 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.38 10.32 7.67 -40.82 -0.31 10.00 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.19 2.35 8.06 -52.49 -0.42 1.92 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -35.68 377.18 -8.69 -44.38 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.38 Total: 4.93 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.75 Total: 3.21 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.17 Total: -62.11 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.31 Total: -14.04 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.75 Total: 0.24 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.68 -8.69 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497463159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.909 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds