Wall clock time and date at job start Sat Apr 11 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46539 * 2 1 4 4 C 1.46502 * 119.99999 * 93.84663 * 3 2 1 5 5 C 1.53006 * 109.46690 * 269.99788 * 4 3 2 6 6 N 1.46502 * 109.46690 * 180.02562 * 5 4 3 7 7 C 1.36939 * 119.99482 * 179.72594 * 6 5 4 8 8 H 1.07993 * 120.00317 * 0.27093 * 7 6 5 9 9 C 1.38819 * 119.99766 * 180.27768 * 7 6 5 10 10 N 1.31618 * 119.99827 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46737 * 59.99680 * 11 9 7 13 13 H 1.48497 * 109.47212 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47174 * 299.99934 * 11 9 7 15 15 C 1.34773 * 120.00416 * 273.83971 * 3 2 1 16 16 O 1.21679 * 120.00353 * 175.47802 * 15 3 2 17 17 C 1.46689 * 119.99651 * 355.48140 * 15 3 2 18 18 C 1.35662 * 126.12874 * 186.95601 * 17 15 3 19 19 N 1.30947 * 114.18863 * 179.78432 * 18 17 15 20 20 C 1.29429 * 117.36209 * 0.52257 * 19 18 17 21 21 C 1.50707 * 124.80319 * 179.73407 * 20 19 18 22 22 H 1.08993 * 109.86697 * 164.27412 * 21 20 19 23 23 C 1.54104 * 109.87468 * 285.27888 * 21 20 19 24 24 C 1.54807 * 104.18765 * 121.45326 * 23 21 20 25 25 C 1.54999 * 102.09292 * 20.88109 * 24 23 21 26 26 O 1.43745 * 109.88002 * 43.26164 * 21 20 19 27 27 S 1.70955 * 110.39521 * 359.70788 * 20 19 18 28 28 H 1.09002 * 109.47324 * 60.00456 * 1 2 3 29 29 H 1.09007 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47487 * 299.99885 * 1 2 3 31 31 H 1.08991 * 109.47487 * 240.00115 * 2 1 3 32 32 H 1.09002 * 109.47324 * 119.99544 * 2 1 3 33 33 H 1.08994 * 109.47452 * 149.99722 * 4 3 2 34 34 H 1.09002 * 109.47295 * 29.99523 * 4 3 2 35 35 H 1.08999 * 109.46911 * 60.00143 * 5 4 3 36 36 H 1.09002 * 109.47035 * 299.99894 * 5 4 3 37 37 H 0.96999 * 120.00166 * 0.02562 * 6 5 4 38 38 H 0.96997 * 119.99466 * 180.02562 * 10 9 7 39 39 H 1.08001 * 122.90627 * 359.95816 * 18 17 15 40 40 H 1.09004 * 110.48677 * 240.13270 * 23 21 20 41 41 H 1.09002 * 110.48669 * 2.77669 * 23 21 20 42 42 H 1.08999 * 110.91000 * 139.07541 * 24 23 21 43 43 H 1.08994 * 110.91012 * 262.64915 * 24 23 21 44 44 H 1.08996 * 110.61880 * 81.47383 * 25 24 23 45 45 H 1.09001 * 110.62016 * 204.47804 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3425 2.0436 1.2659 5 6 1.0984 2.7538 1.8032 6 7 1.4229 3.4166 3.0688 7 6 0.4603 4.1252 3.7370 8 1 -0.5391 4.1918 3.3333 9 6 0.7692 4.7581 4.9333 10 7 1.9872 4.6766 5.4255 11 14 -0.5437 5.7253 5.8445 12 1 -1.6689 4.8224 6.1963 13 1 0.0362 6.2996 7.0851 14 1 -1.0421 6.8223 4.9766 15 6 2.1691 2.0428 -1.1645 16 8 2.4954 3.2150 -1.1606 17 6 1.9399 1.3495 -2.4368 18 6 2.1814 1.8491 -3.6747 19 7 1.8948 1.0250 -4.6511 20 6 1.4175 -0.1345 -4.3302 21 6 1.0262 -1.2061 -5.3150 22 1 0.9226 -2.1616 -4.8009 23 6 -0.3041 -0.8309 -5.9965 24 6 0.0412 -0.7880 -7.5049 25 6 1.3290 -1.6484 -7.5678 26 8 2.0230 -1.3108 -6.3453 27 16 1.2945 -0.2786 -2.6312 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.1350 2.7736 1.1015 34 1 2.6776 1.3004 1.9894 35 1 0.3059 2.0237 1.9677 36 1 0.7633 3.4970 1.0797 37 1 2.3207 3.3571 3.4312 38 1 2.2029 5.1185 6.2616 39 1 2.5785 2.8397 -3.8405 40 1 -1.0610 -1.5901 -5.7997 41 1 -0.6451 0.1466 -5.6552 42 1 -0.7552 -1.2359 -8.0992 43 1 0.2391 0.2334 -7.8298 44 1 1.0810 -2.7096 -7.5855 45 1 1.9287 -1.3787 -8.4371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497463159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:33 Heat of formation + Delta-G solvation = -33.303951 kcal Electronic energy + Delta-G solvation = -26831.417532 eV Core-core repulsion = 22975.816449 eV Total energy + Delta-G solvation = -3855.601082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52634 -40.90314 -39.73099 -37.68609 -36.46546 -33.81831 -33.22682 -32.49424 -31.78275 -30.46112 -29.04122 -26.67445 -25.67090 -24.75028 -23.86376 -23.26288 -22.43900 -21.99169 -20.02536 -19.72104 -19.19161 -18.02263 -17.82796 -17.19822 -16.92316 -16.52660 -16.46906 -16.15235 -15.85007 -15.53145 -15.37127 -15.21723 -15.04185 -14.83141 -14.55107 -14.34891 -14.26266 -13.93534 -13.24682 -12.95536 -12.88603 -12.80339 -12.71118 -12.67135 -12.65977 -12.47139 -12.19085 -12.17450 -12.16824 -11.87584 -11.70780 -11.33944 -10.96905 -10.89570 -10.58093 -10.36511 -10.10337 -9.75228 -9.06685 -7.98203 -5.28812 -0.91059 0.04351 0.44724 1.29853 1.45550 1.49700 1.55570 1.70294 2.00104 2.54879 2.83500 3.03584 3.31493 3.35368 3.64134 3.72842 3.73458 3.90363 3.99726 4.04307 4.10058 4.13317 4.19987 4.28236 4.31836 4.36002 4.41642 4.51143 4.69833 4.74314 4.81319 4.81431 4.92554 4.97316 5.00853 5.03582 5.06429 5.18234 5.33083 5.36873 5.46153 5.83542 6.11066 6.23077 6.60059 6.86043 7.29479 8.00910 8.26459 9.24725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029008 B = 0.002142 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.022897 B =13067.867231 C =13158.750182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 N -0.598 5.598 4 C 0.124 3.876 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.251 4.251 8 H 0.072 0.928 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.977 3.023 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.587 3.413 16 O -0.568 6.568 17 C -0.323 4.323 18 C 0.114 3.886 19 N -0.489 5.489 20 C 0.003 3.997 21 C 0.146 3.854 22 H 0.122 0.878 23 C -0.142 4.142 24 C -0.149 4.149 25 C 0.040 3.960 26 O -0.388 6.388 27 S 0.305 5.695 28 H 0.053 0.947 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.038 0.962 36 H -0.004 1.004 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.177 0.823 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -23.023 -25.336 34.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.031 4.031 3 N -0.330 5.330 4 C 0.001 3.999 5 C 0.021 3.979 6 N -0.385 5.385 7 C -0.383 4.383 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.616 5.616 11 Si 0.805 3.195 12 H -0.198 1.198 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.375 3.625 16 O -0.449 6.449 17 C -0.447 4.447 18 C -0.045 4.045 19 N -0.203 5.203 20 C -0.270 4.270 21 C 0.085 3.915 22 H 0.139 0.861 23 C -0.181 4.181 24 C -0.187 4.187 25 C -0.036 4.036 26 O -0.307 6.307 27 S 0.565 5.435 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.014 0.986 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.194 0.806 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.402 -23.081 -25.196 34.595 hybrid contribution 0.308 2.270 0.528 2.351 sum -5.094 -20.811 -24.668 32.674 Atomic orbital electron populations 1.22478 0.93824 1.05141 1.02496 1.22275 0.96347 0.80435 1.04058 1.47840 1.64946 1.15089 1.05083 1.21487 0.96878 0.97582 0.83907 1.21014 0.96231 0.94067 0.86582 1.42374 1.11614 1.61773 1.22779 1.19530 0.92522 1.23990 1.02211 0.90970 1.25622 0.98952 1.02660 0.99337 1.69805 1.20205 1.49593 1.22022 0.85165 0.78313 0.78517 0.77468 1.19814 1.21780 1.20834 1.17203 0.76857 0.85445 0.82974 1.90849 1.49610 1.17052 1.87347 1.25678 1.18397 1.02512 0.98102 1.22202 0.96317 1.00332 0.85619 1.66273 1.15077 1.03021 1.35978 1.28740 0.99475 0.96535 1.02209 1.21599 0.88819 0.93498 0.87564 0.86096 1.23036 0.95800 1.03731 0.95524 1.23115 0.98740 1.01061 0.95760 1.23868 0.93073 0.99758 0.86877 1.89017 1.31182 1.91335 1.19193 1.83832 1.55015 1.07507 0.97118 0.92829 0.86894 0.92409 0.89749 0.85660 0.91854 0.87405 0.94401 0.98595 0.79167 0.93790 0.80555 0.86495 0.91588 0.87304 0.91919 0.89399 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 9.24 71.98 0.67 -2.25 16 2 C 0.09 1.63 5.70 86.38 0.49 2.12 16 3 N -0.60 -16.86 2.48 -826.52 -2.05 -18.91 16 4 C 0.12 4.24 5.53 86.38 0.48 4.72 16 5 C 0.15 6.31 6.58 86.38 0.57 6.88 16 6 N -0.74 -39.18 5.60 -343.43 -1.92 -41.11 16 7 C -0.25 -14.50 9.99 84.03 0.84 -13.66 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 10 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 11 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 14 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 15 C 0.59 19.31 7.61 86.45 0.66 19.97 16 16 O -0.57 -24.15 16.50 -4.28 -0.07 -24.22 16 17 C -0.32 -8.48 6.29 23.88 0.15 -8.33 16 18 C 0.11 3.15 11.10 84.23 0.93 4.09 16 19 N -0.49 -12.63 10.48 -190.29 -1.99 -14.62 16 20 C 0.00 0.06 6.08 88.46 0.54 0.60 16 21 C 0.15 2.01 3.93 30.22 0.12 2.13 16 22 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 23 C -0.14 -1.40 6.63 31.58 0.21 -1.19 16 24 C -0.15 -1.36 7.16 31.89 0.23 -1.13 16 25 C 0.04 0.41 7.72 72.67 0.56 0.97 16 26 O -0.39 -7.11 11.17 -148.98 -1.66 -8.77 16 27 S 0.30 4.86 16.27 -56.49 -0.92 3.94 16 28 H 0.05 0.94 6.88 -2.39 -0.02 0.93 16 29 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 1.21 6.53 -2.39 -0.02 1.19 16 31 H 0.09 1.22 3.85 -22.94 -0.09 1.14 16 32 H 0.13 1.68 7.85 -2.39 -0.02 1.66 16 33 H 0.06 2.49 7.49 -2.39 -0.02 2.47 16 34 H 0.11 3.11 7.87 -2.39 -0.02 3.09 16 35 H 0.04 1.50 6.53 -2.39 -0.02 1.48 16 36 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.38 20.73 7.67 -92.71 -0.71 20.02 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 39 H 0.18 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.07 0.90 7.69 -2.39 -0.02 0.88 16 42 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -80.82 377.18 0.83 -79.99 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.23 Total: 23.29 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.91 Total: 11.08 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.68 Total: -134.19 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.73 Total: -32.99 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -0.92 Total: 3.94 kcal Total: -80.82 0.83 -79.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497463159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.691 kcal (2) G-P(sol) polarization free energy of solvation -80.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds