Wall clock time and date at job start Sat Apr 11 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47167 * 2 1 4 4 C 1.46496 * 120.00232 * 86.18468 * 3 2 1 5 5 C 1.53005 * 109.46763 * 89.99931 * 4 3 2 6 6 N 1.46507 * 109.46732 * 180.02562 * 5 4 3 7 7 C 1.36935 * 119.99523 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00555 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00066 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00314 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99847 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46753 * 89.99658 * 11 9 7 13 13 H 1.48495 * 109.47086 * 209.99495 * 11 9 7 14 14 H 1.48494 * 109.46895 * 330.00118 * 11 9 7 15 15 C 1.34783 * 119.99750 * 266.46516 * 3 2 1 16 16 O 1.21688 * 119.99486 * 186.38434 * 15 3 2 17 17 C 1.46680 * 119.99904 * 6.38573 * 15 3 2 18 18 C 1.35656 * 126.13621 * 11.15768 * 17 15 3 19 19 N 1.30942 * 114.19574 * 179.97438 * 18 17 15 20 20 C 1.29430 * 117.36089 * 0.02562 * 19 18 17 21 21 C 1.50696 * 124.80258 * 180.02562 * 20 19 18 22 22 H 1.09000 * 110.33186 * 197.22428 * 21 20 19 23 23 C 1.54480 * 110.37103 * 74.97688 * 21 20 19 24 24 C 1.54510 * 104.06169 * 217.18892 * 23 21 20 25 25 C 1.54477 * 104.06275 * 359.97438 * 24 23 21 26 26 O 1.44426 * 110.37288 * 319.59568 * 21 20 19 27 27 S 1.70956 * 110.39211 * 359.72072 * 20 19 18 28 28 H 1.09000 * 109.46885 * 60.00311 * 1 2 3 29 29 H 1.08996 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46923 * 300.00356 * 1 2 3 31 31 H 1.09000 * 109.47111 * 240.00143 * 2 1 3 32 32 H 1.08995 * 109.46872 * 120.00179 * 2 1 3 33 33 H 1.08992 * 109.47561 * 210.00228 * 4 3 2 34 34 H 1.08998 * 109.47290 * 330.00517 * 4 3 2 35 35 H 1.08999 * 109.47142 * 300.00105 * 5 4 3 36 36 H 1.08996 * 109.46993 * 60.00718 * 5 4 3 37 37 H 0.96993 * 120.00415 * 359.97438 * 6 5 4 38 38 H 0.97004 * 119.99974 * 179.97438 * 10 9 7 39 39 H 1.08000 * 122.90156 * 0.02562 * 18 17 15 40 40 H 1.09001 * 110.51191 * 335.83068 * 23 21 20 41 41 H 1.08995 * 110.51489 * 98.40963 * 23 21 20 42 42 H 1.09000 * 110.51132 * 118.64727 * 24 23 21 43 43 H 1.09004 * 110.51180 * 241.21544 * 24 23 21 44 44 H 1.09005 * 110.37305 * 142.80822 * 25 24 23 45 45 H 1.08996 * 110.37344 * 265.03324 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1830 2.1000 1.2659 5 6 3.5973 1.8704 1.8025 6 7 3.7617 2.5887 3.0687 7 6 4.9544 2.5305 3.7390 8 1 5.7737 1.9547 3.3344 9 6 5.1105 3.2115 4.9384 10 7 6.2566 3.1551 5.5830 11 14 3.6936 4.2079 5.6379 12 1 2.8700 3.3443 6.5217 13 1 4.2306 5.3491 6.4218 14 1 2.8540 4.7222 4.5263 15 6 2.3109 1.9926 -1.1651 16 8 2.8251 3.0954 -1.1610 17 6 2.0093 1.3284 -2.4377 18 6 1.2558 0.2119 -2.5985 19 7 1.1376 -0.1813 -3.8419 20 6 1.7378 0.5219 -4.7477 21 6 1.7135 0.2233 -6.2246 22 1 2.5170 0.7570 -6.7322 23 6 0.3454 0.6099 -6.8290 24 6 0.0731 -0.4922 -7.8771 25 6 1.3092 -1.4139 -7.7825 26 8 1.8289 -1.1983 -6.4521 27 16 2.5549 1.8423 -4.0325 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0252 3.1659 1.1017 34 1 1.4557 1.7324 1.9897 35 1 3.7550 0.8044 1.9667 36 1 4.3246 2.2381 1.0787 37 1 3.0261 3.1061 3.4319 38 1 6.3658 3.6313 6.4210 39 1 0.7926 -0.3073 -1.7725 40 1 -0.4271 0.6047 -6.0600 41 1 0.4013 1.5882 -7.3062 42 1 -0.8340 -1.0421 -7.6263 43 1 -0.0073 -0.0595 -8.8744 44 1 1.0162 -2.4560 -7.9106 45 1 2.0496 -1.1338 -8.5317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497463160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:38 Heat of formation + Delta-G solvation = 16.111694 kcal Electronic energy + Delta-G solvation = -26703.102700 eV Core-core repulsion = 22849.644441 eV Total energy + Delta-G solvation = -3853.458259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.92382 -40.00727 -38.91827 -36.48092 -34.94887 -32.78332 -32.40151 -31.48656 -30.79056 -29.62293 -27.75326 -25.86759 -23.84340 -23.76944 -23.28809 -21.88262 -21.64154 -20.90576 -19.66572 -18.39666 -17.61364 -17.29093 -16.79018 -16.35342 -15.88210 -15.71500 -15.52622 -15.19573 -14.56253 -14.41329 -14.21626 -14.09877 -13.78338 -13.76543 -13.51633 -12.98245 -12.88172 -12.63484 -12.33363 -12.20055 -12.15861 -11.84849 -11.69020 -11.59608 -11.38053 -11.22755 -11.15284 -11.07358 -10.75103 -10.43699 -10.36955 -10.16400 -9.75149 -9.72969 -9.58714 -9.20614 -8.88655 -8.72514 -7.23536 -5.74906 -3.11323 -0.07942 0.77487 1.33459 2.17520 2.90362 3.01923 3.38135 3.39055 3.41648 3.46848 3.63410 4.11355 4.23935 4.29966 4.36033 4.53315 4.60095 4.60815 4.70856 4.83014 4.85237 4.88094 5.06187 5.12784 5.19927 5.30038 5.34274 5.40787 5.44481 5.45738 5.52449 5.55944 5.60628 5.68448 5.72650 5.88271 5.94319 6.23958 6.36394 6.60822 6.79299 7.24616 7.32150 7.98523 8.03643 8.43131 9.21556 9.93556 10.12700 11.43343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028610 B = 0.002156 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.431888 B =12986.228492 C =13276.074875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 N -0.592 5.592 4 C 0.108 3.892 5 C 0.145 3.855 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.590 3.410 16 O -0.524 6.524 17 C -0.284 4.284 18 C 0.053 3.947 19 N -0.452 5.452 20 C 0.028 3.972 21 C 0.153 3.847 22 H 0.093 0.907 23 C -0.143 4.143 24 C -0.152 4.152 25 C 0.042 3.958 26 O -0.349 6.349 27 S 0.244 5.756 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.033 0.967 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.215 0.785 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 -9.220 -29.145 34.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 N -0.324 5.324 4 C -0.015 4.015 5 C 0.017 3.983 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.376 3.624 16 O -0.401 6.401 17 C -0.408 4.408 18 C -0.104 4.104 19 N -0.166 5.166 20 C -0.246 4.246 21 C 0.092 3.908 22 H 0.111 0.889 23 C -0.182 4.182 24 C -0.190 4.190 25 C -0.035 4.035 26 O -0.267 6.267 27 S 0.503 5.497 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.231 0.769 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.819 -8.459 -29.531 34.552 hybrid contribution -1.393 0.317 1.297 1.930 sum -17.212 -8.142 -28.233 34.054 Atomic orbital electron populations 1.22431 0.95600 1.03162 1.03378 1.22259 0.94558 0.82841 1.04934 1.47606 1.64984 1.14050 1.05794 1.21792 0.98969 0.97803 0.82899 1.20901 0.93238 0.95797 0.88340 1.42548 1.14265 1.60038 1.23069 1.19031 0.90229 1.26221 1.01787 0.89224 1.24678 0.96743 1.00273 0.97497 1.69704 1.23554 1.47166 1.17728 0.86523 0.82638 0.80348 0.78914 1.21044 1.21655 1.20271 1.16741 0.78711 0.84978 0.82010 1.90894 1.42323 1.19862 1.86977 1.25882 1.11530 1.04321 0.99114 1.23817 0.97796 0.93853 0.94955 1.66166 1.20628 1.29851 0.99948 1.27170 1.00041 0.97426 1.00000 1.21386 0.98327 0.84745 0.86371 0.88917 1.22994 0.96469 0.99758 0.99011 1.22929 0.99668 0.96855 0.99530 1.23478 0.94288 1.00991 0.84717 1.89297 1.84032 1.20956 1.32445 1.84051 1.45024 1.24803 0.95829 0.91676 0.90548 0.91030 0.88715 0.88896 0.89609 0.90074 0.95405 0.94882 0.80672 0.93040 0.76935 0.89790 0.89659 0.90215 0.90122 0.88543 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.91 37.16 0.33 -1.13 16 2 C 0.08 0.76 5.57 -4.04 -0.02 0.74 16 3 N -0.59 -8.17 2.47 -175.23 -0.43 -8.60 16 4 C 0.11 1.73 5.50 -4.04 -0.02 1.71 16 5 C 0.15 2.97 6.58 -4.04 -0.03 2.94 16 6 N -0.75 -18.54 5.41 -59.90 -0.32 -18.87 16 7 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 11 Si 0.89 22.44 27.74 -169.99 -4.71 17.73 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 15 C 0.59 9.15 7.63 -12.85 -0.10 9.05 16 16 O -0.52 -10.12 16.63 5.20 0.09 -10.04 16 17 C -0.28 -3.63 6.27 -37.10 -0.23 -3.86 16 18 C 0.05 0.59 8.44 -18.85 -0.16 0.43 16 19 N -0.45 -5.28 10.47 -11.50 -0.12 -5.40 16 20 C 0.03 0.29 6.24 -13.29 -0.08 0.21 16 21 C 0.15 1.23 3.80 -27.11 -0.10 1.12 16 22 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 23 C -0.14 -0.85 6.62 -25.16 -0.17 -1.02 16 24 C -0.15 -0.70 7.09 -25.16 -0.18 -0.88 16 25 C 0.04 0.24 7.63 37.93 0.29 0.53 16 26 O -0.35 -3.36 11.30 -35.23 -0.40 -3.76 16 27 S 0.24 2.65 23.03 -107.50 -2.48 0.17 16 28 H 0.06 0.53 6.44 -51.93 -0.33 0.19 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.10 0.88 4.74 -51.93 -0.25 0.63 16 32 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.09 1.50 7.51 -51.93 -0.39 1.11 16 34 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.36 8.51 5.53 -40.82 -0.23 8.29 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.22 1.93 2.70 -52.49 -0.14 1.79 16 40 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -36.88 376.76 -9.06 -45.94 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.41 Total: 3.68 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.73 Total: 2.59 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.10 Total: -61.99 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.31 Total: -13.80 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.73 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.48 Total: 0.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.88 -9.06 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497463160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.048 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds