Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00019 * 2 1 4 4 C 1.50703 * 109.46878 * 293.95446 * 3 2 1 5 5 C 1.41382 * 126.80343 * 94.71168 * 4 3 2 6 6 C 1.35453 * 103.98557 * 179.89083 * 5 4 3 7 7 O 1.34041 * 106.44451 * 0.36359 * 6 5 4 8 8 N 1.20917 * 111.56914 * 359.75357 * 7 6 5 9 9 C 1.46900 * 110.99833 * 123.95089 * 2 1 3 10 10 C 1.53003 * 109.46954 * 66.04819 * 9 2 1 11 11 H 1.09002 * 109.87378 * 295.69863 * 10 9 2 12 12 C 1.54327 * 110.00988 * 174.59941 * 10 9 2 13 13 C 1.55153 * 102.94211 * 218.31833 * 12 10 9 14 14 C 1.54908 * 101.58630 * 35.49999 * 13 12 10 15 15 N 1.47022 * 109.88494 * 56.71642 * 10 9 2 16 16 C 1.34778 * 125.64436 * 298.47432 * 15 10 9 17 17 O 1.21284 * 120.00229 * 0.02562 * 16 15 10 18 18 C 1.50699 * 119.99870 * 179.97438 * 16 15 10 19 19 S 1.80993 * 109.47346 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00205 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00478 * 359.97438 * 20 19 18 22 22 C 1.38804 * 119.99876 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99838 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00102 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47011 * 90.00422 * 24 22 20 26 26 H 1.48508 * 109.47246 * 210.00058 * 24 22 20 27 27 H 1.48493 * 109.47588 * 330.00362 * 24 22 20 28 28 H 1.08998 * 109.47102 * 296.04427 * 1 2 3 29 29 H 1.08999 * 109.47237 * 56.04672 * 1 2 3 30 30 H 1.09002 * 109.47099 * 176.05007 * 1 2 3 31 31 H 1.09004 * 109.47488 * 53.94886 * 3 2 1 32 32 H 1.09000 * 109.47137 * 173.95666 * 3 2 1 33 33 H 1.08002 * 128.00801 * 0.02562 * 5 4 3 34 34 H 1.08003 * 126.77660 * 180.09900 * 6 5 4 35 35 H 1.08994 * 109.47283 * 306.04725 * 9 2 1 36 36 H 1.08995 * 109.46806 * 186.04150 * 9 2 1 37 37 H 1.09006 * 110.71875 * 336.68167 * 12 10 9 38 38 H 1.09003 * 110.72034 * 99.95202 * 12 10 9 39 39 H 1.09006 * 111.00338 * 277.42810 * 13 12 10 40 40 H 1.08997 * 111.03848 * 153.59537 * 13 12 10 41 41 H 1.08992 * 110.36921 * 204.15530 * 14 13 12 42 42 H 1.09001 * 110.45822 * 81.87204 * 14 13 12 43 43 H 1.08996 * 109.47515 * 300.00645 * 18 16 15 44 44 H 1.09008 * 109.47268 * 60.00284 * 18 16 15 45 45 H 0.97003 * 119.99964 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 0.5160 2.8736 -1.5419 6 6 0.6469 3.2281 -2.8426 7 8 1.7605 2.6300 -3.2887 8 7 2.2948 1.9807 -2.4198 9 6 1.9954 -0.7659 1.1376 10 6 1.6314 -2.2426 0.9704 11 1 0.5488 -2.3639 1.0079 12 6 2.2924 -3.0791 2.0863 13 6 2.7112 -4.3767 1.3460 14 6 3.1095 -3.8261 -0.0460 15 7 2.1464 -2.7423 -0.3128 16 6 1.7953 -2.2858 -1.5314 17 8 0.9889 -1.3856 -1.6326 18 6 2.4058 -2.8931 -2.7681 19 16 1.7385 -2.0713 -4.2362 20 6 2.5969 -2.9531 -5.4972 21 1 3.2907 -3.7369 -5.2315 22 6 2.3821 -2.6398 -6.8323 23 7 3.0230 -3.2989 -7.7744 24 14 1.1825 -1.2837 -7.2921 25 1 1.9037 0.0126 -7.3613 26 1 0.5780 -1.5850 -8.6147 27 1 0.1123 -1.2006 -6.2660 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9274 0.8309 32 1 3.0797 1.3444 0.1082 33 1 -0.2630 3.1585 -0.8501 34 1 -0.0175 3.8633 -3.4097 35 1 1.5611 -0.3872 2.0628 36 1 3.0796 -0.6611 1.1756 37 1 3.1658 -2.5650 2.4876 38 1 1.5763 -3.3005 2.8777 39 1 1.8731 -5.0692 1.2670 40 1 3.5614 -4.8501 1.8369 41 1 3.0217 -4.6063 -0.8019 42 1 4.1260 -3.4331 -0.0236 43 1 3.4877 -2.7641 -2.7402 44 1 2.1675 -3.9561 -2.8065 45 1 2.8726 -3.0802 -8.7074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505421110.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = 46.077922 kcal Electronic energy + Delta-G solvation = -28590.259329 eV Core-core repulsion = 24738.100503 eV Total energy + Delta-G solvation = -3852.158826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.73657 -41.13787 -38.45315 -37.93713 -34.81842 -34.67871 -32.82188 -32.46758 -31.28265 -30.08936 -28.68690 -27.84594 -27.07609 -24.55747 -23.91757 -22.84161 -21.99852 -21.43879 -20.18216 -19.34214 -18.59412 -18.40928 -17.99734 -17.48520 -17.11455 -16.56927 -16.27988 -16.10884 -15.74374 -15.64117 -15.28625 -14.93029 -14.74662 -14.35903 -14.16297 -14.02119 -13.89466 -13.50892 -13.38433 -13.17810 -13.13700 -12.98830 -12.81252 -12.65219 -12.53601 -12.28283 -12.08430 -11.99284 -11.86666 -11.77790 -11.51471 -11.17750 -10.97575 -10.48379 -10.43813 -10.30749 -9.57086 -8.93596 -8.72807 -8.52492 -6.19801 0.78429 1.00630 1.30113 1.40774 1.44562 1.57016 1.95064 2.23715 2.30116 2.60238 2.74134 2.85859 3.14957 3.38580 3.62420 3.73482 3.80820 3.92502 4.04957 4.19542 4.25422 4.30564 4.34171 4.37333 4.42576 4.44170 4.52606 4.62061 4.64080 4.67578 4.76868 4.80591 4.88742 4.92607 5.00680 5.12433 5.17067 5.25530 5.28859 5.39955 5.63973 5.69746 6.08981 6.21271 6.34307 6.70166 6.93089 7.54177 7.54942 8.60693 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008891 B = 0.005449 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.356539 B = 5137.485970 C = 7798.483926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.526 5.526 3 C 0.136 3.864 4 C 0.017 3.983 5 C -0.235 4.235 6 C -0.062 4.062 7 O 0.073 5.927 8 N -0.385 5.385 9 C 0.049 3.951 10 C 0.140 3.860 11 H 0.063 0.937 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.088 3.912 15 N -0.612 5.612 16 C 0.541 3.459 17 O -0.490 6.490 18 C -0.101 4.101 19 S -0.158 6.158 20 C -0.532 4.532 21 H 0.054 0.946 22 C 0.047 3.953 23 N -0.919 5.919 24 Si 0.917 3.083 25 H -0.265 1.265 26 H -0.256 1.256 27 H -0.239 1.239 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.194 0.806 34 H 0.253 0.747 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 7.512 25.657 27.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.251 5.251 3 C 0.008 3.992 4 C -0.143 4.143 5 C -0.257 4.257 6 C -0.142 4.142 7 O 0.009 5.991 8 N -0.091 5.091 9 C -0.079 4.079 10 C 0.036 3.964 11 H 0.081 0.919 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.034 4.034 15 N -0.350 5.350 16 C 0.327 3.673 17 O -0.362 6.362 18 C -0.252 4.252 19 S 0.068 5.932 20 C -0.679 4.679 21 H 0.072 0.928 22 C -0.158 4.158 23 N -0.557 5.557 24 Si 0.739 3.261 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.163 1.163 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.211 0.789 34 H 0.269 0.731 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.966 7.998 24.405 26.158 hybrid contribution 0.031 -0.220 -0.057 0.230 sum -4.934 7.778 24.348 26.032 Atomic orbital electron populations 1.21943 0.86495 1.01096 0.98098 1.62106 1.09060 1.11103 1.42848 1.20308 1.00174 0.89029 0.89686 1.23814 0.94797 0.99744 0.95926 1.23001 1.01428 1.03325 0.97922 1.26813 0.91242 1.00088 0.96097 1.84838 1.32688 1.46836 1.34789 1.73910 1.22886 1.12947 0.99360 1.22631 1.00273 0.93284 0.91734 1.21788 0.98313 0.93024 0.83272 0.91902 1.22664 1.01822 0.94844 0.95850 1.22735 1.02930 0.97174 0.92925 1.22513 0.92759 0.89165 0.98995 1.48275 1.44795 1.37670 1.04211 1.19160 0.82715 0.82549 0.82894 1.90734 1.33130 1.27252 1.85098 1.23199 1.03312 1.03150 0.95531 1.84545 1.58976 1.51573 0.98081 1.22529 1.29192 1.22634 0.93581 0.92797 1.25550 0.97004 0.98151 0.95142 1.70025 1.42651 1.42023 1.01045 0.85835 0.80800 0.79644 0.79834 1.18950 1.17963 1.16250 0.95627 0.93968 0.92657 0.90780 0.90698 0.78858 0.73110 0.91914 0.90912 0.89072 0.87919 0.90536 0.87484 0.91546 0.91312 0.89823 0.88939 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 7.19 127.69 0.92 2.83 16 2 N -0.53 -14.44 2.08 -927.05 -1.93 -16.37 16 3 C 0.14 3.50 5.55 85.56 0.48 3.98 16 4 C 0.02 0.53 6.02 43.58 0.26 0.79 16 5 C -0.24 -5.61 10.07 22.40 0.23 -5.38 16 6 C -0.06 -1.49 12.30 67.18 0.83 -0.66 16 7 O 0.07 2.58 11.20 71.63 0.80 3.38 16 8 N -0.39 -14.90 12.07 -49.55 -0.60 -15.50 16 9 C 0.05 0.99 4.55 86.30 0.39 1.38 16 10 C 0.14 2.79 2.89 45.34 0.13 2.92 16 11 H 0.06 1.38 6.79 -2.39 -0.02 1.36 16 12 C -0.11 -1.27 6.48 31.78 0.21 -1.07 16 13 C -0.12 -1.48 7.08 31.98 0.23 -1.25 16 14 C 0.09 1.82 6.69 86.85 0.58 2.40 16 15 N -0.61 -16.61 3.07 -788.05 -2.42 -19.03 16 16 C 0.54 20.37 7.44 87.66 0.65 21.02 16 17 O -0.49 -20.38 9.98 -3.04 -0.03 -20.41 16 18 C -0.10 -4.37 5.16 71.24 0.37 -4.00 16 19 S -0.16 -8.63 18.55 -56.49 -1.05 -9.68 16 20 C -0.53 -33.15 10.04 67.96 0.68 -32.47 16 21 H 0.05 3.57 8.03 -2.91 -0.02 3.55 16 22 C 0.05 2.88 5.50 84.86 0.47 3.35 16 23 N -0.92 -58.53 13.97 21.65 0.30 -58.23 16 24 Si 0.92 47.65 27.74 68.60 1.90 49.55 16 25 H -0.26 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 27 H -0.24 -12.37 6.74 99.48 0.67 -11.70 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.04 1.32 6.35 -2.39 -0.02 1.31 16 30 H 0.05 1.66 5.48 -2.39 -0.01 1.65 16 31 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 33 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.25 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 36 H 0.07 1.47 7.86 -2.39 -0.02 1.45 16 37 H 0.09 0.82 7.81 -2.38 -0.02 0.80 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 1.48 7.47 -2.39 -0.02 1.46 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 43 H 0.08 3.63 8.14 -2.40 -0.02 3.61 16 44 H 0.09 3.83 7.85 -2.39 -0.02 3.81 16 45 H 0.28 16.23 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -83.40 371.66 4.35 -79.05 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.95 Total: 13.43 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.41 Total: -6.18 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.64 Total: -109.13 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.77 Total: -17.03 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.90 Total: 49.55 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -83.40 4.35 -79.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505421110.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.125 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds