Wall clock time and date at job start Sat Apr 11 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99812 * 2 1 4 4 C 1.52995 * 109.47192 * 269.99904 * 3 2 1 5 5 O 1.42905 * 109.47135 * 65.00286 * 4 3 2 6 6 C 1.42895 * 114.00020 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47166 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46506 * 65.00124 * 7 6 5 9 9 C 1.36941 * 119.99529 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00285 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99933 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00384 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00030 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47154 * 89.99980 * 13 11 9 15 15 H 1.48494 * 109.47289 * 210.00225 * 13 11 9 16 16 H 1.48504 * 109.46970 * 330.00068 * 13 11 9 17 17 C 1.34777 * 120.00238 * 180.02562 * 2 1 3 18 18 O 1.21684 * 120.00004 * 180.65840 * 17 2 1 19 19 C 1.46684 * 119.99657 * 0.64679 * 17 2 1 20 20 S 1.76211 * 126.13476 * 350.80551 * 19 17 2 21 21 C 1.70949 * 90.31506 * 179.97438 * 20 19 17 22 22 N 1.29429 * 110.39348 * 0.02562 * 21 20 19 23 23 C 1.30948 * 117.36198 * 359.97438 * 22 21 20 24 24 C 1.50696 * 122.90409 * 179.97438 * 23 22 21 25 25 C 1.53007 * 117.49718 * 8.64192 * 24 23 22 26 26 C 1.53004 * 60.00171 * 252.51183 * 25 24 23 27 27 H 1.08997 * 109.47610 * 263.51204 * 1 2 3 28 28 H 1.09003 * 109.47493 * 23.51927 * 1 2 3 29 29 H 1.09010 * 109.46931 * 143.51273 * 1 2 3 30 30 H 1.08990 * 109.47099 * 30.00162 * 3 2 1 31 31 H 1.08997 * 109.46844 * 150.00099 * 3 2 1 32 32 H 1.09001 * 109.47118 * 184.99922 * 4 3 2 33 33 H 1.09001 * 109.47269 * 305.00168 * 4 3 2 34 34 H 1.09004 * 109.47297 * 299.99913 * 6 5 4 35 35 H 1.09005 * 109.47336 * 59.99676 * 6 5 4 36 36 H 1.08998 * 109.47231 * 184.99806 * 7 6 5 37 37 H 1.08998 * 109.47268 * 305.00347 * 7 6 5 38 38 H 0.96996 * 120.00443 * 359.97438 * 8 7 6 39 39 H 0.97000 * 120.00441 * 179.97438 * 12 11 9 40 40 H 1.08002 * 124.80320 * 179.97438 * 21 20 19 41 41 H 1.08995 * 115.55529 * 154.35377 * 24 23 22 42 42 H 1.09000 * 117.49870 * 0.02562 * 25 24 23 43 43 H 1.09007 * 117.49456 * 145.02362 * 25 24 23 44 44 H 1.09001 * 117.50154 * 252.51216 * 26 25 24 45 45 H 1.08995 * 117.51424 * 107.48165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 8 1.2059 1.9936 -2.0814 6 6 1.3324 2.4176 -3.4401 7 6 -0.0567 2.6906 -4.0205 8 7 -0.6662 3.8217 -3.3166 9 6 -1.9185 4.2515 -3.6667 10 1 -2.4565 3.7569 -4.4618 11 6 -2.4958 5.3235 -3.0002 12 7 -3.6992 5.7369 -3.3369 13 14 -1.5649 6.1795 -1.6253 14 1 -0.7551 7.2880 -2.1913 15 1 -2.5310 6.7259 -0.6388 16 1 -0.6687 5.2049 -0.9528 17 6 2.1389 -1.1672 -0.0005 18 8 3.3557 -1.1672 0.0116 19 6 1.4055 -2.4374 -0.0154 20 16 -0.3328 -2.6362 0.1938 21 6 -0.1691 -4.3294 0.0244 22 7 1.0716 -4.6459 -0.1644 23 6 1.9441 -3.6699 -0.1929 24 6 3.4190 -3.8962 -0.4038 25 6 3.8691 -5.3064 -0.7908 26 6 4.1520 -4.7718 0.6146 27 1 -0.3634 -0.1161 1.0210 28 1 -0.3634 0.9423 -0.4101 29 1 -0.3633 -0.8263 -0.6112 30 1 1.6084 2.0283 0.5138 31 1 3.1498 1.1384 0.5138 32 1 3.0731 2.6065 -1.4437 33 1 2.9642 0.9132 -1.9815 34 1 1.9297 3.3284 -3.4825 35 1 1.8211 1.6353 -4.0209 36 1 0.0327 2.9279 -5.0806 37 1 -0.6821 1.8065 -3.8975 38 1 -0.1829 4.2662 -2.6028 39 1 -4.1029 6.4858 -2.8709 40 1 -0.9854 -5.0352 0.0695 41 1 3.9668 -3.0572 -0.8328 42 1 3.0983 -6.0703 -0.8933 43 1 4.7131 -5.3953 -1.4748 44 1 5.1822 -4.5090 0.8552 45 1 3.5676 -5.1839 1.4372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508179424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:00 Heat of formation + Delta-G solvation = 21.140912 kcal Electronic energy + Delta-G solvation = -27135.369290 eV Core-core repulsion = 23282.129114 eV Total energy + Delta-G solvation = -3853.240176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77228 -39.62692 -37.88216 -36.68672 -35.79412 -34.60084 -31.91756 -31.29693 -29.87875 -28.13272 -27.14432 -25.99440 -23.76651 -23.31164 -22.83400 -22.51430 -21.17489 -20.94466 -18.80904 -18.49954 -17.65088 -17.03777 -16.79912 -16.26858 -16.12310 -15.95309 -15.36517 -14.96319 -14.73196 -14.51269 -14.28200 -14.05143 -13.76901 -13.45571 -13.22360 -13.09075 -12.82480 -12.65220 -12.43855 -12.08801 -12.00424 -11.75821 -11.70705 -11.54993 -11.17279 -10.98328 -10.87358 -10.62799 -10.55508 -10.17465 -10.12328 -9.84297 -9.63971 -9.59970 -9.43015 -9.15526 -8.91034 -8.71143 -7.22037 -5.76428 -3.11245 -0.01413 0.94798 1.34146 2.15406 2.68639 2.88895 3.37744 3.41868 3.45238 3.72111 3.81991 3.89246 4.25782 4.49128 4.60061 4.66968 4.83847 4.87528 4.95656 4.96716 5.05927 5.22679 5.23551 5.25509 5.32945 5.44542 5.45711 5.52940 5.54052 5.60095 5.66838 5.70840 5.79202 5.81021 5.94839 5.98224 6.05249 6.23390 6.48663 6.62183 7.03452 7.36178 7.39813 7.85096 7.99722 8.42513 9.22516 9.94806 10.15763 11.42019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002683 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.245454 B =10434.866320 C =10992.696282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.599 5.599 3 C 0.122 3.878 4 C 0.043 3.957 5 O -0.375 6.375 6 C 0.055 3.945 7 C 0.160 3.840 8 N -0.751 5.751 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.274 1.274 17 C 0.595 3.405 18 O -0.527 6.527 19 C -0.296 4.296 20 S 0.206 5.794 21 C 0.002 3.998 22 N -0.478 5.478 23 C 0.175 3.825 24 C -0.093 4.093 25 C -0.164 4.164 26 C -0.156 4.156 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.364 0.636 39 H 0.259 0.741 40 H 0.201 0.799 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.964 -20.574 9.571 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.331 5.331 3 C 0.000 4.000 4 C -0.035 4.035 5 O -0.295 6.295 6 C -0.022 4.022 7 C 0.032 3.968 8 N -0.397 5.397 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.714 3.286 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.200 1.200 17 C 0.383 3.617 18 O -0.406 6.406 19 C -0.420 4.420 20 S 0.464 5.536 21 C -0.292 4.292 22 N -0.191 5.191 23 C 0.037 3.963 24 C -0.114 4.114 25 C -0.201 4.201 26 C -0.194 4.194 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.197 0.803 39 H 0.069 0.931 40 H 0.217 0.783 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.369 -20.501 9.672 25.823 hybrid contribution 1.283 0.530 0.626 1.522 sum 13.651 -19.971 10.297 26.292 Atomic orbital electron populations 1.22144 0.78933 1.04995 1.01886 1.47561 1.07365 1.05540 1.72606 1.21614 0.98410 0.84112 0.95891 1.22894 0.87531 0.99334 0.93786 1.87969 1.28042 1.87577 1.25879 1.22847 0.99341 0.97686 0.82311 1.20666 0.89982 0.91422 0.94698 1.42633 1.18415 1.36495 1.42185 1.19067 0.91180 1.11418 1.15566 0.89303 1.24663 0.96398 0.98704 0.99463 1.69705 1.15035 1.29397 1.44237 0.86539 0.79299 0.79799 0.82938 1.21240 1.21816 1.20003 1.16751 0.86541 0.81823 0.76590 1.90776 1.12393 1.86554 1.50888 1.25372 0.97007 0.98887 1.20691 1.84650 1.03286 1.02033 1.63668 1.29121 0.97473 1.01754 1.00884 1.66070 1.00829 1.35527 1.16683 1.19679 0.95759 0.85807 0.95101 1.20790 0.87987 0.96426 1.06187 1.22998 1.03211 0.95993 0.97942 1.22899 1.00900 1.02386 0.93176 0.91752 0.87116 0.91013 0.88982 0.88160 0.92376 0.93161 0.93393 0.93489 0.94155 0.94870 0.80343 0.93105 0.78274 0.84453 0.87768 0.88473 0.88191 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 8.71 59.84 0.52 1.22 16 2 N -0.60 -7.20 2.84 -183.13 -0.52 -7.72 16 3 C 0.12 1.39 5.79 -4.04 -0.02 1.36 16 4 C 0.04 0.53 6.28 37.16 0.23 0.77 16 5 O -0.38 -5.85 9.24 -35.23 -0.33 -6.18 16 6 C 0.05 0.85 6.07 37.16 0.23 1.07 16 7 C 0.16 3.06 6.65 -4.04 -0.03 3.04 16 8 N -0.75 -17.86 5.35 -59.91 -0.32 -18.18 16 9 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 10 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 12 N -0.94 -29.30 13.97 55.49 0.78 -28.52 16 13 Si 0.88 21.98 27.74 -169.99 -4.71 17.26 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.27 -6.40 6.52 56.52 0.37 -6.04 16 17 C 0.60 7.86 7.62 -12.85 -0.10 7.77 16 18 O -0.53 -7.90 14.03 5.20 0.07 -7.83 16 19 C -0.30 -3.54 6.24 -37.09 -0.23 -3.77 16 20 S 0.21 1.80 18.17 -107.50 -1.95 -0.16 16 21 C 0.00 0.01 12.22 51.75 0.63 0.65 16 22 N -0.48 -5.37 9.80 -11.53 -0.11 -5.48 16 23 C 0.17 2.13 6.42 -83.89 -0.54 1.59 16 24 C -0.09 -1.07 5.35 -91.77 -0.49 -1.56 16 25 C -0.16 -1.54 10.08 -26.73 -0.27 -1.81 16 26 C -0.16 -1.49 10.23 -26.72 -0.27 -1.77 16 27 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 28 H 0.11 1.38 7.26 -51.93 -0.38 1.00 16 29 H 0.07 0.75 4.62 -23.82 -0.11 0.64 16 30 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.10 1.07 7.41 -51.93 -0.38 0.68 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.36 8.53 5.53 -40.82 -0.23 8.30 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.14 1.74 6.39 -51.93 -0.33 1.40 16 42 H 0.10 1.02 7.74 -51.93 -0.40 0.62 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -34.41 382.04 -8.41 -42.82 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.47 Total: 6.69 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.59 Total: 1.54 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.18 Total: -59.91 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.25 Total: -14.00 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.95 Total: -0.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.41 -8.41 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508179424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.963 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds