Wall clock time and date at job start Sat Apr 11 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 119.99812 * 2 1 4 4 C 1.52995 * 109.47192 * 269.99904 * 3 2 1 5 5 O 1.42905 * 109.47135 * 65.00286 * 4 3 2 6 6 C 1.42895 * 114.00020 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47166 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46506 * 65.00124 * 7 6 5 9 9 C 1.36941 * 119.99529 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00285 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99933 * 180.02562 * 9 8 7 12 12 N 1.31623 * 120.00384 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00030 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47154 * 89.99980 * 13 11 9 15 15 H 1.48494 * 109.47289 * 210.00225 * 13 11 9 16 16 H 1.48504 * 109.46970 * 330.00068 * 13 11 9 17 17 C 1.34777 * 120.00238 * 180.02562 * 2 1 3 18 18 O 1.21684 * 120.00004 * 180.65840 * 17 2 1 19 19 C 1.46684 * 119.99657 * 0.64679 * 17 2 1 20 20 S 1.76211 * 126.13476 * 350.80551 * 19 17 2 21 21 C 1.70949 * 90.31506 * 179.97438 * 20 19 17 22 22 N 1.29429 * 110.39348 * 0.02562 * 21 20 19 23 23 C 1.30948 * 117.36198 * 359.97438 * 22 21 20 24 24 C 1.50696 * 122.90409 * 179.97438 * 23 22 21 25 25 C 1.53007 * 117.49718 * 8.64192 * 24 23 22 26 26 C 1.53004 * 60.00171 * 252.51183 * 25 24 23 27 27 H 1.08997 * 109.47610 * 263.51204 * 1 2 3 28 28 H 1.09003 * 109.47493 * 23.51927 * 1 2 3 29 29 H 1.09010 * 109.46931 * 143.51273 * 1 2 3 30 30 H 1.08990 * 109.47099 * 30.00162 * 3 2 1 31 31 H 1.08997 * 109.46844 * 150.00099 * 3 2 1 32 32 H 1.09001 * 109.47118 * 184.99922 * 4 3 2 33 33 H 1.09001 * 109.47269 * 305.00168 * 4 3 2 34 34 H 1.09004 * 109.47297 * 299.99913 * 6 5 4 35 35 H 1.09005 * 109.47336 * 59.99676 * 6 5 4 36 36 H 1.08998 * 109.47231 * 184.99806 * 7 6 5 37 37 H 1.08998 * 109.47268 * 305.00347 * 7 6 5 38 38 H 0.96996 * 120.00443 * 359.97438 * 8 7 6 39 39 H 0.97000 * 120.00441 * 179.97438 * 12 11 9 40 40 H 1.08002 * 124.80320 * 179.97438 * 21 20 19 41 41 H 1.08995 * 115.55529 * 154.35377 * 24 23 22 42 42 H 1.09000 * 117.49870 * 0.02562 * 25 24 23 43 43 H 1.09007 * 117.49456 * 145.02362 * 25 24 23 44 44 H 1.09001 * 117.50154 * 252.51216 * 26 25 24 45 45 H 1.08995 * 117.51424 * 107.48165 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 8 1.2059 1.9936 -2.0814 6 6 1.3324 2.4176 -3.4401 7 6 -0.0567 2.6906 -4.0205 8 7 -0.6662 3.8217 -3.3166 9 6 -1.9185 4.2515 -3.6667 10 1 -2.4565 3.7569 -4.4618 11 6 -2.4958 5.3235 -3.0002 12 7 -3.6992 5.7369 -3.3369 13 14 -1.5649 6.1795 -1.6253 14 1 -0.7551 7.2880 -2.1913 15 1 -2.5310 6.7259 -0.6388 16 1 -0.6687 5.2049 -0.9528 17 6 2.1389 -1.1672 -0.0005 18 8 3.3557 -1.1672 0.0116 19 6 1.4055 -2.4374 -0.0154 20 16 -0.3328 -2.6362 0.1938 21 6 -0.1691 -4.3294 0.0244 22 7 1.0716 -4.6459 -0.1644 23 6 1.9441 -3.6699 -0.1929 24 6 3.4190 -3.8962 -0.4038 25 6 3.8691 -5.3064 -0.7908 26 6 4.1520 -4.7718 0.6146 27 1 -0.3634 -0.1161 1.0210 28 1 -0.3634 0.9423 -0.4101 29 1 -0.3633 -0.8263 -0.6112 30 1 1.6084 2.0283 0.5138 31 1 3.1498 1.1384 0.5138 32 1 3.0731 2.6065 -1.4437 33 1 2.9642 0.9132 -1.9815 34 1 1.9297 3.3284 -3.4825 35 1 1.8211 1.6353 -4.0209 36 1 0.0327 2.9279 -5.0806 37 1 -0.6821 1.8065 -3.8975 38 1 -0.1829 4.2662 -2.6028 39 1 -4.1029 6.4858 -2.8709 40 1 -0.9854 -5.0352 0.0695 41 1 3.9668 -3.0572 -0.8328 42 1 3.0983 -6.0703 -0.8933 43 1 4.7131 -5.3953 -1.4748 44 1 5.1822 -4.5090 0.8552 45 1 3.5676 -5.1839 1.4372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508179424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:00 Heat of formation + Delta-G solvation = -2.377102 kcal Electronic energy + Delta-G solvation = -27136.389107 eV Core-core repulsion = 23282.129114 eV Total energy + Delta-G solvation = -3854.259993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61808 -40.51425 -39.05486 -37.45974 -36.92904 -36.26458 -33.67988 -32.47483 -30.94577 -29.61722 -28.02057 -26.84389 -25.21018 -24.61373 -23.66084 -23.25397 -22.82577 -21.82798 -19.74415 -19.66876 -19.30145 -17.93937 -17.79374 -17.26874 -17.11101 -16.91863 -16.62571 -16.11196 -15.99451 -15.47570 -15.38952 -15.23749 -14.90549 -14.67299 -14.53824 -14.31181 -14.11125 -13.83635 -13.65782 -13.27839 -13.12076 -12.91166 -12.79930 -12.52234 -12.45911 -12.39554 -12.13343 -11.90865 -11.75457 -11.72481 -11.43042 -11.08729 -10.99625 -10.64143 -10.54971 -10.41777 -10.02121 -9.52098 -9.27595 -8.00229 -5.33271 -0.79111 0.20058 0.60833 1.33770 1.40846 1.43577 1.52251 1.80073 1.98892 2.51424 2.71649 2.96625 3.15753 3.31785 3.40626 3.67248 3.71314 3.94344 3.99803 4.00498 4.11057 4.16445 4.23826 4.24687 4.39190 4.44011 4.45195 4.46646 4.52250 4.59168 4.72855 4.77417 4.82586 4.85715 4.99338 5.03966 5.10318 5.18525 5.26645 5.34210 5.76958 6.10220 6.22370 6.29571 6.59744 6.90976 7.10556 7.86318 8.07162 9.21260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002683 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.245454 B =10434.866320 C =10992.696282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.600 5.600 3 C 0.121 3.879 4 C 0.044 3.956 5 O -0.394 6.394 6 C 0.064 3.936 7 C 0.155 3.845 8 N -0.752 5.752 9 C -0.233 4.233 10 H 0.056 0.944 11 C -0.065 4.065 12 N -0.985 5.985 13 Si 0.956 3.044 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.248 1.248 17 C 0.591 3.409 18 O -0.554 6.554 19 C -0.330 4.330 20 S 0.246 5.754 21 C 0.010 3.990 22 N -0.501 5.501 23 C 0.167 3.833 24 C -0.115 4.115 25 C -0.152 4.152 26 C -0.149 4.149 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.368 0.632 39 H 0.258 0.742 40 H 0.237 0.763 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.082 -21.393 10.861 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.331 5.331 3 C -0.001 4.001 4 C -0.033 4.033 5 O -0.314 6.314 6 C -0.013 4.013 7 C 0.028 3.972 8 N -0.399 5.399 9 C -0.364 4.364 10 H 0.074 0.926 11 C -0.256 4.256 12 N -0.636 5.636 13 Si 0.783 3.217 14 H -0.207 1.207 15 H -0.223 1.223 16 H -0.172 1.172 17 C 0.380 3.620 18 O -0.435 6.435 19 C -0.453 4.453 20 S 0.504 5.496 21 C -0.283 4.283 22 N -0.215 5.215 23 C 0.028 3.972 24 C -0.136 4.136 25 C -0.189 4.189 26 C -0.186 4.186 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.253 0.747 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.510 -21.346 10.955 27.535 hybrid contribution 0.867 0.672 0.144 1.106 sum 14.377 -20.674 11.098 27.519 Atomic orbital electron populations 1.22182 0.78307 1.04278 1.03105 1.47646 1.07817 1.05493 1.72136 1.21690 0.98955 0.84088 0.95414 1.22994 0.86532 0.99905 0.93897 1.87936 1.29846 1.87737 1.25841 1.22688 0.96738 0.99069 0.82768 1.20827 0.91939 0.89480 0.94914 1.42619 1.16987 1.37642 1.42612 1.19045 0.92547 1.10710 1.14131 0.92641 1.25510 0.97455 0.99936 1.02706 1.69890 1.17201 1.30351 1.46131 0.85381 0.78055 0.78848 0.79369 1.20687 1.22296 1.17236 1.16956 0.86393 0.82460 0.76202 1.90746 1.13497 1.87033 1.52244 1.25395 0.99137 0.98377 1.22434 1.84392 1.00540 1.01841 1.62793 1.29772 0.97535 1.02508 0.98458 1.66120 1.01667 1.35494 1.18214 1.19853 0.96228 0.86231 0.94915 1.20762 0.88179 0.96793 1.07873 1.23030 1.03310 0.94471 0.98090 1.22943 1.01176 1.01422 0.93091 0.89701 0.88632 0.90817 0.88046 0.87540 0.90624 0.93786 0.92365 0.91074 0.93620 0.95588 0.79861 0.93368 0.74708 0.86181 0.88119 0.86975 0.87065 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 8.71 127.77 1.11 2.43 16 2 N -0.60 -13.76 2.84 -851.52 -2.42 -16.18 16 3 C 0.12 2.55 5.79 86.38 0.50 3.05 16 4 C 0.04 1.02 6.28 71.98 0.45 1.47 16 5 O -0.39 -11.44 9.24 -148.98 -1.38 -12.81 16 6 C 0.06 1.82 6.07 71.98 0.44 2.26 16 7 C 0.15 5.74 6.65 86.38 0.57 6.31 16 8 N -0.75 -34.86 5.35 -343.45 -1.84 -36.70 16 9 C -0.23 -13.27 10.47 84.03 0.88 -12.39 16 10 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 11 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 12 N -0.98 -62.87 13.97 21.65 0.30 -62.57 16 13 Si 0.96 44.94 27.74 68.60 1.90 46.84 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 17 C 0.59 15.41 7.62 86.45 0.66 16.07 16 18 O -0.55 -16.75 14.03 -4.30 -0.06 -16.81 16 19 C -0.33 -7.70 6.24 23.88 0.15 -7.55 16 20 S 0.25 3.85 18.17 -56.49 -1.03 2.82 16 21 C 0.01 0.15 12.22 130.60 1.60 1.75 16 22 N -0.50 -10.64 9.80 -190.40 -1.87 -12.50 16 23 C 0.17 3.99 6.42 42.09 0.27 4.26 16 24 C -0.12 -2.65 5.35 -11.54 -0.06 -2.72 16 25 C -0.15 -2.74 10.08 30.60 0.31 -2.43 16 26 C -0.15 -2.76 10.23 30.60 0.31 -2.45 16 27 H 0.08 1.33 7.82 -2.39 -0.02 1.31 16 28 H 0.10 2.26 7.26 -2.39 -0.02 2.24 16 29 H 0.07 1.44 4.62 -20.25 -0.09 1.34 16 30 H 0.10 1.95 8.07 -2.39 -0.02 1.93 16 31 H 0.11 2.13 7.41 -2.39 -0.02 2.11 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.69 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.37 16.36 5.53 -92.71 -0.51 15.84 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.24 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.12 3.15 6.39 -2.39 -0.02 3.14 16 42 H 0.10 1.90 7.74 -2.39 -0.02 1.88 16 43 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -75.18 382.04 1.63 -73.55 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.36 Total: 27.64 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 7.66 Total: 6.73 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.82 Total: -127.95 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.44 Total: -29.62 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.03 Total: 2.82 kcal Total: -75.18 1.63 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508179424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.169 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds