Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99612 * 2 1 4 4 C 1.53003 * 109.47060 * 90.00175 * 3 2 1 5 5 C 1.52996 * 109.47301 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21633 * 119.99975 * 0.28060 * 7 6 5 9 9 C 1.47269 * 120.00021 * 180.27620 * 7 6 5 10 10 C 1.46683 * 126.94164 * 0.02910 * 9 7 6 11 11 C 1.34483 * 106.33071 * 179.97438 * 10 9 7 12 12 N 1.36444 * 108.85967 * 0.02562 * 11 10 9 13 13 C 1.46501 * 124.85346 * 179.97438 * 12 11 10 14 14 C 1.34659 * 110.29561 * 359.74504 * 12 11 10 15 15 C 1.34773 * 120.00496 * 180.02562 * 2 1 3 16 16 O 1.21273 * 120.00265 * 179.97438 * 15 2 1 17 17 C 1.50708 * 119.99502 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46952 * 180.02562 * 17 15 2 19 19 C 1.76195 * 99.99910 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00118 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47093 * 89.99818 * 23 21 19 25 25 H 1.48498 * 109.47468 * 210.00126 * 23 21 19 26 26 H 1.48498 * 109.47273 * 330.00052 * 23 21 19 27 27 H 1.09000 * 109.47328 * 89.99791 * 1 2 3 28 28 H 1.08997 * 109.46828 * 209.99607 * 1 2 3 29 29 H 1.08999 * 109.46957 * 330.00018 * 1 2 3 30 30 H 1.08990 * 109.47414 * 330.00158 * 3 2 1 31 31 H 1.09002 * 109.47037 * 209.99470 * 3 2 1 32 32 H 1.09004 * 109.47038 * 59.99597 * 4 3 2 33 33 H 1.09000 * 109.46939 * 300.00250 * 4 3 2 34 34 H 1.09004 * 109.47066 * 60.00027 * 5 4 3 35 35 H 1.08994 * 109.46974 * 300.00175 * 5 4 3 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 37 37 H 1.08000 * 126.83217 * 359.95372 * 10 9 7 38 38 H 1.08001 * 125.57104 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47145 * 90.02272 * 13 12 11 40 40 H 1.08997 * 109.47047 * 210.02388 * 13 12 11 41 41 H 1.09007 * 109.46958 * 330.02235 * 13 12 11 42 42 H 1.08004 * 125.80516 * 180.29323 * 14 12 11 43 43 H 1.08998 * 109.46855 * 300.00155 * 17 15 2 44 44 H 1.08995 * 109.47113 * 60.00211 * 17 15 2 45 45 H 0.97002 * 120.00095 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2179 3.0352 1.4426 6 7 3.4615 3.4583 2.8238 7 6 4.1292 4.6029 3.0701 8 8 4.5250 5.2871 2.1457 9 6 4.3794 5.0252 4.4586 10 6 3.9741 4.3222 5.6805 11 6 4.4126 5.0688 6.7095 12 7 5.0511 6.1689 6.2156 13 6 5.6645 7.2184 7.0333 14 6 5.0412 6.1495 4.8692 15 6 2.1390 -1.1671 -0.0005 16 8 3.3517 -1.1671 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4417 -5.2082 0.0003 20 1 0.3764 -5.0305 0.0001 21 6 1.9284 -6.5080 -0.0001 22 7 3.2268 -6.7246 -0.0004 23 14 0.7410 -7.9500 0.0000 24 1 0.4259 -8.3319 -1.4001 25 1 1.3624 -9.1030 0.6997 26 1 -0.5095 -7.5615 0.7004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.0416 0.9508 1.9564 33 1 1.5000 1.8407 1.9564 34 1 2.6291 3.7951 0.9287 35 1 4.1703 2.9045 0.9289 36 1 3.1461 2.9126 3.5611 37 1 3.4312 3.3906 5.7416 38 1 4.2809 4.8358 7.7558 39 1 6.7049 6.9620 7.2328 40 1 5.6201 8.1675 6.4992 41 1 5.1247 7.3064 7.9762 42 1 5.4799 6.8957 4.2233 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 3.5670 -7.6330 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523388520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -23.854878 kcal Electronic energy + Delta-G solvation = -25263.748893 eV Core-core repulsion = 21408.557553 eV Total energy + Delta-G solvation = -3855.191340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.55550 -39.57753 -39.15593 -36.09901 -34.87535 -33.28569 -32.42057 -31.93999 -29.58992 -29.13266 -27.45438 -26.70817 -25.55394 -24.93199 -22.69648 -21.87170 -20.52093 -19.84225 -19.11594 -18.23700 -17.66742 -16.67800 -16.25966 -16.06680 -15.89193 -15.54236 -15.40140 -15.25828 -14.79710 -14.50447 -14.20693 -13.93479 -13.55403 -13.46951 -13.29862 -13.00485 -12.97008 -12.77684 -12.61758 -12.56791 -12.41423 -12.29952 -12.12407 -11.76399 -11.69398 -11.05807 -11.01563 -10.91233 -10.74260 -10.05853 -9.79830 -9.34898 -9.21856 -9.05837 -8.95323 -8.66739 -8.54044 -8.21379 -6.49133 -6.20761 -3.91340 1.51142 2.07741 2.39293 2.91328 3.05705 3.22672 3.23741 3.29525 3.33372 3.43463 3.63722 4.21120 4.22907 4.52555 4.58999 4.59947 4.73491 4.80064 4.85294 4.96883 5.03049 5.09599 5.11370 5.14180 5.16986 5.35214 5.42904 5.50699 5.54641 5.61661 5.66578 5.71713 5.78134 5.91424 6.01756 6.08602 6.14551 6.33374 6.39553 6.64049 6.66680 6.81729 7.47523 7.53939 7.60355 8.22147 8.35891 8.57416 9.24441 10.86633 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.001673 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.721834 B =16731.266167 C =17544.347544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.625 5.625 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.125 3.875 6 N -0.725 5.725 7 C 0.591 3.409 8 O -0.556 6.556 9 C -0.235 4.235 10 C -0.168 4.168 11 C -0.018 4.018 12 N -0.449 5.449 13 C 0.068 3.932 14 C 0.074 3.926 15 C 0.532 3.468 16 O -0.514 6.514 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.175 0.825 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 27.978 13.258 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.187 4.187 5 C 0.001 3.999 6 N -0.376 5.376 7 C 0.380 3.620 8 O -0.436 6.436 9 C -0.245 4.245 10 C -0.192 4.192 11 C -0.144 4.144 12 N -0.124 5.124 13 C -0.073 4.073 14 C -0.061 4.061 15 C 0.320 3.680 16 O -0.388 6.388 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.164 0.836 38 H 0.185 0.815 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.192 0.808 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.185 28.560 12.806 31.300 hybrid contribution -2.439 -1.237 0.491 2.779 sum -2.625 27.323 13.297 30.500 Atomic orbital electron populations 1.21767 0.79661 1.03073 1.01803 1.47864 1.06830 1.05639 1.75821 1.21228 0.98428 0.84942 0.95595 1.22176 1.00838 0.96669 0.99025 1.21235 1.00532 0.95377 0.82789 1.45756 1.58551 1.24330 1.08938 1.17366 0.76938 0.80290 0.87408 1.90770 1.52416 1.54529 1.45849 1.20351 1.11858 0.99728 0.92599 1.22069 1.05499 1.00958 0.90716 1.21769 1.03583 0.89597 0.99441 1.43641 1.43515 1.19319 1.05927 1.22137 0.99109 0.90083 0.96005 1.21794 1.01507 0.99706 0.83104 1.20364 0.87963 0.84604 0.75103 1.90698 1.13711 1.86787 1.47571 1.23561 1.04548 0.97284 1.04697 1.85407 1.08070 0.93351 1.96699 1.22861 0.94310 0.92236 1.58946 0.90956 1.24989 0.95661 0.98366 0.94550 1.70022 1.11735 1.21647 1.46852 0.86172 0.80260 0.80734 0.78351 1.20270 1.20764 1.19712 0.92687 0.90671 0.91416 0.90554 0.89439 0.90397 0.91269 0.91445 0.91081 0.76478 0.83595 0.81543 0.90542 0.89541 0.89518 0.80813 0.89281 0.89277 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.24 59.85 0.61 1.42 16 2 N -0.63 -8.60 2.87 -181.57 -0.52 -9.12 16 3 C 0.12 1.41 5.41 -4.04 -0.02 1.39 16 4 C -0.15 -1.54 5.65 -26.73 -0.15 -1.69 16 5 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 6 N -0.72 -7.66 5.55 -61.43 -0.34 -8.00 16 7 C 0.59 7.49 7.81 -12.59 -0.10 7.39 16 8 O -0.56 -8.89 16.91 5.25 0.09 -8.80 16 9 C -0.24 -2.48 6.29 -103.35 -0.65 -3.13 16 10 C -0.17 -1.39 10.56 -37.50 -0.40 -1.79 16 11 C -0.02 -0.12 11.34 -16.83 -0.19 -0.31 16 12 N -0.45 -2.91 3.09 -124.53 -0.38 -3.29 16 13 C 0.07 0.16 11.03 59.85 0.66 0.82 16 14 C 0.07 0.65 11.12 -16.84 -0.19 0.47 16 15 C 0.53 10.04 7.69 -10.98 -0.08 9.96 16 16 O -0.51 -11.69 15.44 5.56 0.09 -11.60 16 17 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 29 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.09 1.19 7.42 -51.93 -0.39 0.80 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 3.40 7.60 -40.82 -0.31 3.09 16 37 H 0.15 0.94 7.70 -52.49 -0.40 0.54 16 38 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 41 H 0.09 0.07 8.13 -51.92 -0.42 -0.35 16 42 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 43 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 44 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -38.77 399.20 -8.57 -47.34 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.85 Total: 0.44 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.16 Total: 0.03 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.51 Total: -45.86 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: 0.17 Total: -20.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.77 -8.57 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523388520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.487 kcal (2) G-P(sol) polarization free energy of solvation -38.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds