Wall clock time and date at job start Sat Apr 11 2020 05:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99612 * 2 1 4 4 C 1.53003 * 109.47060 * 90.00175 * 3 2 1 5 5 C 1.52996 * 109.47301 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47059 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21633 * 119.99975 * 0.28060 * 7 6 5 9 9 C 1.47269 * 120.00021 * 180.27620 * 7 6 5 10 10 C 1.46683 * 126.94164 * 0.02910 * 9 7 6 11 11 C 1.34483 * 106.33071 * 179.97438 * 10 9 7 12 12 N 1.36444 * 108.85967 * 0.02562 * 11 10 9 13 13 C 1.46501 * 124.85346 * 179.97438 * 12 11 10 14 14 C 1.34659 * 110.29561 * 359.74504 * 12 11 10 15 15 C 1.34773 * 120.00496 * 180.02562 * 2 1 3 16 16 O 1.21273 * 120.00265 * 179.97438 * 15 2 1 17 17 C 1.50708 * 119.99502 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46952 * 180.02562 * 17 15 2 19 19 C 1.76195 * 99.99910 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00038 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00118 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48509 * 109.47093 * 89.99818 * 23 21 19 25 25 H 1.48498 * 109.47468 * 210.00126 * 23 21 19 26 26 H 1.48498 * 109.47273 * 330.00052 * 23 21 19 27 27 H 1.09000 * 109.47328 * 89.99791 * 1 2 3 28 28 H 1.08997 * 109.46828 * 209.99607 * 1 2 3 29 29 H 1.08999 * 109.46957 * 330.00018 * 1 2 3 30 30 H 1.08990 * 109.47414 * 330.00158 * 3 2 1 31 31 H 1.09002 * 109.47037 * 209.99470 * 3 2 1 32 32 H 1.09004 * 109.47038 * 59.99597 * 4 3 2 33 33 H 1.09000 * 109.46939 * 300.00250 * 4 3 2 34 34 H 1.09004 * 109.47066 * 60.00027 * 5 4 3 35 35 H 1.08994 * 109.46974 * 300.00175 * 5 4 3 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 37 37 H 1.08000 * 126.83217 * 359.95372 * 10 9 7 38 38 H 1.08001 * 125.57104 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47145 * 90.02272 * 13 12 11 40 40 H 1.08997 * 109.47047 * 210.02388 * 13 12 11 41 41 H 1.09007 * 109.46958 * 330.02235 * 13 12 11 42 42 H 1.08004 * 125.80516 * 180.29323 * 14 12 11 43 43 H 1.08998 * 109.46855 * 300.00155 * 17 15 2 44 44 H 1.08995 * 109.47113 * 60.00211 * 17 15 2 45 45 H 0.97002 * 120.00095 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2179 3.0352 1.4426 6 7 3.4615 3.4583 2.8238 7 6 4.1292 4.6029 3.0701 8 8 4.5250 5.2871 2.1457 9 6 4.3794 5.0252 4.4586 10 6 3.9741 4.3222 5.6805 11 6 4.4126 5.0688 6.7095 12 7 5.0511 6.1689 6.2156 13 6 5.6645 7.2184 7.0333 14 6 5.0412 6.1495 4.8692 15 6 2.1390 -1.1671 -0.0005 16 8 3.3517 -1.1671 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4417 -5.2082 0.0003 20 1 0.3764 -5.0305 0.0001 21 6 1.9284 -6.5080 -0.0001 22 7 3.2268 -6.7246 -0.0004 23 14 0.7410 -7.9500 0.0000 24 1 0.4259 -8.3319 -1.4001 25 1 1.3624 -9.1030 0.6997 26 1 -0.5095 -7.5615 0.7004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.0416 0.9508 1.9564 33 1 1.5000 1.8407 1.9564 34 1 2.6291 3.7951 0.9287 35 1 4.1703 2.9045 0.9289 36 1 3.1461 2.9126 3.5611 37 1 3.4312 3.3906 5.7416 38 1 4.2809 4.8358 7.7558 39 1 6.7049 6.9620 7.2328 40 1 5.6201 8.1675 6.4992 41 1 5.1247 7.3064 7.9762 42 1 5.4799 6.8957 4.2233 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 3.5670 -7.6330 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523388520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:02 Heat of formation + Delta-G solvation = -50.819571 kcal Electronic energy + Delta-G solvation = -25264.918170 eV Core-core repulsion = 21408.557553 eV Total energy + Delta-G solvation = -3856.360617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12941 -40.87208 -40.15014 -37.26231 -35.98147 -34.57507 -33.85607 -32.90075 -30.67046 -30.07762 -28.21218 -27.68107 -27.39755 -25.94173 -23.52915 -22.77789 -21.11589 -20.71857 -20.41947 -19.50968 -18.86523 -18.06699 -17.36158 -16.95000 -16.87135 -16.66421 -16.58850 -16.43431 -16.12637 -15.73286 -15.17302 -15.03512 -14.54567 -14.51519 -14.43706 -14.17256 -13.91966 -13.54954 -13.45340 -13.33853 -13.24507 -13.16066 -13.05086 -12.98340 -12.90774 -12.85561 -12.65355 -12.55851 -11.85030 -11.68464 -11.13293 -11.06568 -10.86471 -10.25056 -10.14930 -9.69383 -9.52044 -9.29419 -8.66433 -8.33538 -6.12018 0.75688 1.27239 1.43452 1.47341 1.52151 1.57477 1.59268 1.90698 2.13172 2.28697 2.49274 2.58141 3.00601 3.28279 3.72180 3.89764 3.98883 4.00104 4.01969 4.07951 4.16812 4.24753 4.32905 4.39646 4.45832 4.46876 4.50654 4.58556 4.59704 4.69670 4.75148 4.82609 4.97870 5.00932 5.07773 5.10461 5.18571 5.42594 5.46650 5.60494 5.76576 6.06590 6.20636 6.29612 6.34245 6.63808 7.07571 7.17206 7.31239 8.75702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.001673 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.721834 B =16731.266167 C =17544.347544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.118 3.882 4 C -0.131 4.131 5 C 0.130 3.870 6 N -0.717 5.717 7 C 0.585 3.415 8 O -0.600 6.600 9 C -0.270 4.270 10 C -0.185 4.185 11 C -0.011 4.011 12 N -0.444 5.444 13 C 0.060 3.940 14 C 0.067 3.933 15 C 0.528 3.472 16 O -0.565 6.565 17 C -0.123 4.123 18 S -0.156 6.156 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.411 0.589 37 H 0.158 0.842 38 H 0.200 0.800 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.179 0.821 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 29.087 14.920 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.005 4.005 4 C -0.170 4.170 5 C 0.005 3.995 6 N -0.368 5.368 7 C 0.375 3.625 8 O -0.484 6.484 9 C -0.281 4.281 10 C -0.209 4.209 11 C -0.138 4.138 12 N -0.118 5.118 13 C -0.080 4.080 14 C -0.070 4.070 15 C 0.316 3.684 16 O -0.444 6.444 17 C -0.274 4.274 18 S 0.071 5.929 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.180 1.180 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.248 0.752 37 H 0.176 0.824 38 H 0.217 0.783 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.196 0.804 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.170 29.703 14.504 33.207 hybrid contribution -1.547 -1.398 0.024 2.085 sum -4.717 28.305 14.529 32.164 Atomic orbital electron populations 1.22122 0.76699 1.04910 1.03431 1.47853 1.08590 1.04570 1.73381 1.21424 0.97947 0.84644 0.96507 1.21992 1.01479 0.95394 0.98148 1.21146 0.99671 0.95767 0.82884 1.45700 1.57916 1.23907 1.09258 1.17795 0.76384 0.80214 0.88074 1.90728 1.54420 1.55945 1.47277 1.20409 1.14098 1.01418 0.92144 1.22299 1.06462 1.01874 0.90239 1.22313 1.02023 0.88872 1.00574 1.43948 1.42572 1.19890 1.05369 1.22459 0.99698 0.89400 0.96426 1.21945 1.01219 0.99411 0.84465 1.20183 0.87289 0.85622 0.75320 1.90684 1.15759 1.87512 1.50419 1.23382 1.02669 0.94988 1.06404 1.85614 1.12798 0.97430 1.97032 1.23199 0.94640 0.92623 1.58851 0.89839 1.26139 0.97585 1.01710 0.93725 1.70193 1.14161 1.22444 1.48035 0.84944 0.77908 0.76280 0.78783 1.19354 1.20355 1.18043 0.91123 0.90715 0.87817 0.86621 0.92055 0.93063 0.88638 0.90443 0.93278 0.75247 0.82423 0.78308 0.89590 0.88455 0.87345 0.80430 0.87263 0.87537 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.24 127.77 1.31 2.44 16 2 N -0.61 -15.64 2.87 -846.76 -2.43 -18.07 16 3 C 0.12 2.57 5.41 86.38 0.47 3.04 16 4 C -0.13 -2.59 5.65 30.59 0.17 -2.42 16 5 C 0.13 2.75 5.67 86.38 0.49 3.24 16 6 N -0.72 -15.29 5.55 -466.52 -2.59 -17.88 16 7 C 0.58 15.35 7.81 86.62 0.68 16.03 16 8 O -0.60 -20.16 16.91 -4.14 -0.07 -20.23 16 9 C -0.27 -5.75 6.29 -19.04 -0.12 -5.87 16 10 C -0.19 -2.88 10.56 23.62 0.25 -2.63 16 11 C -0.01 -0.12 11.34 83.12 0.94 0.82 16 12 N -0.44 -4.99 3.09 -547.89 -1.69 -6.68 16 13 C 0.06 0.14 11.03 127.77 1.41 1.55 16 14 C 0.07 1.17 11.12 83.91 0.93 2.10 16 15 C 0.53 19.92 7.69 87.66 0.67 20.60 16 16 O -0.57 -26.79 15.44 -3.01 -0.05 -26.84 16 17 C -0.12 -4.94 4.71 71.24 0.34 -4.60 16 18 S -0.16 -8.76 20.57 -56.49 -1.16 -9.92 16 19 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 23 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 29 H 0.10 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.12 1.67 8.07 -2.39 -0.02 1.65 16 31 H 0.06 1.70 7.42 -2.39 -0.02 1.68 16 32 H 0.05 1.31 8.14 -2.38 -0.02 1.30 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 6.85 7.60 -92.71 -0.70 6.15 16 37 H 0.16 1.87 7.70 -2.91 -0.02 1.85 16 38 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.10 0.04 8.13 -2.39 -0.02 0.02 16 41 H 0.11 -0.18 8.13 -2.38 -0.02 -0.20 16 42 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.11 3.91 7.40 -2.40 -0.02 3.89 16 44 H 0.11 3.87 8.11 -2.40 -0.02 3.85 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -89.56 399.20 3.26 -86.30 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.29 Total: 18.87 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 8.65 Total: 4.95 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -6.43 Total: -98.69 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -0.12 Total: -47.06 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -89.56 3.26 -86.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523388520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.477 kcal (2) G-P(sol) polarization free energy of solvation -89.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds