Wall clock time and date at job start Sat Apr 11 2020 05:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47446 * 2 1 4 4 C 1.35525 * 125.67997 * 265.42252 * 3 2 1 5 5 C 1.35457 * 108.87525 * 179.97438 * 4 3 2 6 6 C 1.39838 * 107.85976 * 0.02562 * 5 4 3 7 7 C 1.37650 * 125.67450 * 85.39670 * 3 2 1 8 8 C 1.46678 * 126.23901 * 359.75424 * 7 3 2 9 9 O 1.21695 * 119.99395 * 355.03244 * 8 7 3 10 10 N 1.34771 * 120.00537 * 175.03156 * 8 7 3 11 11 C 1.46502 * 120.00101 * 185.01719 * 10 8 7 12 12 C 1.53000 * 109.46950 * 180.02562 * 11 10 8 13 13 N 1.46502 * 109.46950 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00195 * 269.99749 * 13 12 11 15 15 C 1.34779 * 119.99801 * 89.99965 * 13 12 11 16 16 O 1.21277 * 120.00028 * 0.02562 * 15 13 12 17 17 C 1.50701 * 119.99444 * 179.97438 * 15 13 12 18 18 S 1.81005 * 109.46764 * 179.97438 * 17 15 13 19 19 C 1.76199 * 99.99922 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99837 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99867 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00043 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99923 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46697 * 120.00244 * 23 21 19 26 26 H 1.48502 * 109.46930 * 240.00105 * 23 21 19 27 27 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46786 * 300.00015 * 1 2 3 29 29 H 1.09002 * 109.46416 * 59.99809 * 1 2 3 30 30 H 1.09006 * 109.47223 * 239.99824 * 2 1 3 31 31 H 1.09007 * 109.46855 * 120.00354 * 2 1 3 32 32 H 1.08007 * 125.56693 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.06745 * 180.02562 * 5 4 3 34 34 H 1.08003 * 126.45022 * 180.02562 * 6 5 4 35 35 H 0.97004 * 119.99713 * 5.02219 * 10 8 7 36 36 H 1.08994 * 109.46750 * 299.99937 * 11 10 8 37 37 H 1.08995 * 109.47042 * 60.00373 * 11 10 8 38 38 H 1.09000 * 109.47372 * 299.99862 * 12 11 10 39 39 H 1.09000 * 109.47337 * 59.99809 * 12 11 10 40 40 H 1.09004 * 109.47310 * 89.99700 * 14 13 12 41 41 H 1.08992 * 109.47193 * 210.00487 * 14 13 12 42 42 H 1.09007 * 109.46856 * 330.00524 * 14 13 12 43 43 H 1.08997 * 109.47326 * 299.99483 * 17 15 13 44 44 H 1.08999 * 109.47138 * 60.00086 * 17 15 13 45 45 H 0.97000 * 119.99630 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3648 2.0971 -1.0973 5 6 2.7671 3.3303 -0.7070 6 6 2.6707 3.3917 0.6867 7 6 2.2015 2.1679 1.1146 8 6 1.9394 1.7776 2.5040 9 8 1.4344 0.6975 2.7475 10 7 2.2577 2.6150 3.5108 11 6 2.0985 2.1825 4.9014 12 6 2.5265 3.3131 5.8393 13 7 2.3666 2.8809 7.2299 14 6 1.0995 3.1121 7.9279 15 6 3.3854 2.2705 7.8672 16 8 4.4345 2.0796 7.2896 17 6 3.2211 1.8264 9.2979 18 16 4.7519 1.0459 9.8668 19 6 4.2915 0.6368 11.5177 20 1 3.3040 0.8823 11.8794 21 6 5.1977 -0.0019 12.3528 22 7 6.4012 -0.3015 11.9117 23 14 4.7093 -0.4363 14.1028 24 1 3.3130 0.0041 14.3508 25 1 4.8057 -1.9058 14.2932 26 1 5.6210 0.2472 15.0552 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3264 1.7424 -2.1168 33 1 3.1027 4.1249 -1.3568 34 1 2.9165 4.2386 1.3102 35 1 2.5923 3.5042 3.3146 36 1 1.0538 1.9330 5.0869 37 1 2.7194 1.3052 5.0824 38 1 3.5711 3.5632 5.6539 39 1 1.9053 4.1903 5.6581 40 1 0.4406 2.2568 7.7777 41 1 1.2899 3.2415 8.9932 42 1 0.6251 4.0100 7.5318 43 1 2.9994 2.6910 9.9235 44 1 2.4021 1.1102 9.3642 45 1 7.0345 -0.7475 12.4955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528179563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:09 Heat of formation + Delta-G solvation = -20.738688 kcal Electronic energy + Delta-G solvation = -25996.363043 eV Core-core repulsion = 22141.306831 eV Total energy + Delta-G solvation = -3855.056212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69225 -39.73136 -39.04837 -36.00862 -34.90649 -34.15692 -32.43378 -31.08234 -29.62910 -29.55834 -28.08539 -26.41421 -25.49172 -23.97837 -23.54353 -22.22429 -20.80037 -19.99765 -19.10923 -18.13539 -17.70079 -16.75961 -16.41881 -16.09912 -15.81045 -15.48453 -15.18330 -14.96356 -14.80980 -14.64229 -14.09735 -13.98414 -13.86618 -13.66442 -13.26053 -12.97919 -12.81148 -12.65753 -12.56833 -12.53278 -12.41930 -12.29665 -12.25500 -11.85336 -11.55491 -11.42239 -11.07513 -11.02538 -10.76066 -10.22988 -9.80720 -9.44763 -9.32644 -9.07955 -9.05513 -8.68394 -8.49453 -8.23429 -6.51082 -6.22329 -3.93036 1.22506 2.28428 2.46071 2.76523 2.98491 3.15949 3.20209 3.21323 3.29142 3.34279 3.62868 4.19404 4.38230 4.49267 4.66239 4.66936 4.71903 4.78813 4.94904 5.04120 5.05838 5.06623 5.08059 5.12947 5.27560 5.34694 5.40374 5.46462 5.54411 5.66335 5.75048 5.76742 5.77390 5.83028 5.88324 5.90935 6.11216 6.12132 6.45341 6.54976 6.70409 6.91902 7.25777 7.42187 7.59393 7.98271 8.34791 8.47850 9.23113 10.85140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021640 B = 0.001857 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.587166 B =15070.813765 C =15303.651811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 N -0.406 5.406 4 C 0.014 3.986 5 C -0.208 4.208 6 C -0.142 4.142 7 C -0.050 4.050 8 C 0.588 3.412 9 O -0.545 6.545 10 N -0.715 5.715 11 C 0.107 3.893 12 C 0.109 3.891 13 N -0.622 5.622 14 C 0.080 3.920 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.402 0.598 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 8.911 -24.501 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.079 5.079 4 C -0.122 4.122 5 C -0.232 4.232 6 C -0.169 4.169 7 C -0.164 4.164 8 C 0.376 3.624 9 O -0.424 6.424 10 N -0.367 5.367 11 C -0.018 4.018 12 C -0.016 4.016 13 N -0.359 5.359 14 C -0.064 4.064 15 C 0.321 3.679 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.184 0.816 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.450 7.366 -25.064 28.939 hybrid contribution -1.431 0.380 1.616 2.191 sum -13.881 7.746 -23.448 28.329 Atomic orbital electron populations 1.22062 0.93905 1.03142 1.02840 1.22048 0.96119 0.79471 1.04887 1.44089 1.46907 1.11759 1.05163 1.22025 1.05450 0.93036 0.91647 1.20817 1.09759 0.97507 0.95117 1.21351 1.03989 0.95896 0.95643 1.20035 1.15151 0.93394 0.87783 1.16962 0.77971 0.84025 0.83447 1.90812 1.43909 1.22623 1.85014 1.45445 1.67558 1.17979 1.05722 1.21785 1.02215 0.98874 0.78927 1.21457 1.03547 0.95568 0.80989 1.47740 1.14736 1.61519 1.11900 1.21828 0.85039 1.01214 0.98291 1.20422 0.82734 0.76351 0.88366 1.90708 1.26762 1.53322 1.67656 1.23560 1.07888 1.04243 0.94364 1.85418 1.10650 1.74153 1.13319 1.22895 1.02615 1.45110 0.97636 0.90852 1.25002 0.94506 0.94976 0.99156 1.70031 1.05050 1.38751 1.36410 0.86111 0.78614 0.78247 0.82487 1.19604 1.20571 1.20563 0.90671 0.91313 0.92476 0.89353 0.87725 0.81560 0.84030 0.83908 0.76275 0.91127 0.90518 0.89058 0.90128 0.92585 0.90363 0.91248 0.89110 0.89127 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.17 37.16 0.38 -0.87 16 2 C 0.10 0.80 6.10 -4.04 -0.02 0.77 16 3 N -0.41 -3.90 2.76 -112.87 -0.31 -4.21 16 4 C 0.01 0.11 11.37 -16.91 -0.19 -0.08 16 5 C -0.21 -1.65 10.81 -39.98 -0.43 -2.08 16 6 C -0.14 -1.25 10.35 -39.12 -0.41 -1.66 16 7 C -0.05 -0.54 6.89 -81.98 -0.56 -1.10 16 8 C 0.59 7.31 7.77 -12.86 -0.10 7.21 16 9 O -0.54 -8.36 14.28 5.19 0.07 -8.28 16 10 N -0.72 -7.31 5.54 -61.62 -0.34 -7.65 16 11 C 0.11 1.25 6.00 -4.04 -0.02 1.23 16 12 C 0.11 1.17 5.56 -4.04 -0.02 1.15 16 13 N -0.62 -8.26 2.87 -181.57 -0.52 -8.78 16 14 C 0.08 0.77 10.29 59.85 0.62 1.38 16 15 C 0.53 9.88 7.69 -10.98 -0.08 9.80 16 16 O -0.51 -11.42 15.44 5.56 0.09 -11.33 16 17 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.70 7.62 -51.93 -0.40 0.30 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.10 1.09 6.72 -51.93 -0.35 0.74 16 32 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.90 7.45 -52.48 -0.39 0.51 16 35 H 0.40 2.93 7.37 -40.82 -0.30 2.63 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 39 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 42 H 0.07 0.48 7.89 -51.93 -0.41 0.07 16 43 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 44 H 0.09 1.70 8.11 -51.92 -0.42 1.27 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -37.32 393.66 -8.78 -46.10 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.71 Total: 1.18 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.49 Total: 0.00 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.44 Total: -46.08 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.16 Total: -19.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.32 -8.78 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528179563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.362 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds