Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47354 * 2 1 4 4 C 1.35534 * 125.67960 * 260.93235 * 3 2 1 5 5 C 1.35457 * 108.86963 * 179.97438 * 4 3 2 6 6 C 1.39830 * 107.86713 * 0.25534 * 5 4 3 7 7 C 1.37650 * 125.67616 * 80.92548 * 3 2 1 8 8 C 1.46682 * 126.23476 * 0.03649 * 7 3 2 9 9 O 1.21693 * 119.99640 * 5.06157 * 8 7 3 10 10 N 1.34781 * 120.00122 * 185.05500 * 8 7 3 11 11 C 1.46502 * 119.99909 * 185.18022 * 10 8 7 12 12 C 1.52995 * 109.46667 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47483 * 65.00179 * 12 11 10 14 14 C 1.53007 * 109.46971 * 184.99709 * 12 11 10 15 15 N 1.46498 * 109.47398 * 304.99858 * 12 11 10 16 16 C 1.34772 * 120.00002 * 155.00428 * 15 12 11 17 17 O 1.21285 * 120.00257 * 359.97438 * 16 15 12 18 18 C 1.50704 * 119.99888 * 179.97438 * 16 15 12 19 19 S 1.81002 * 109.47040 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00086 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99741 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46870 * 90.00382 * 24 22 20 26 26 H 1.48502 * 109.46892 * 210.00004 * 24 22 20 27 27 H 1.48496 * 109.47335 * 330.00482 * 24 22 20 28 28 H 1.08994 * 109.47435 * 59.99658 * 1 2 3 29 29 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46803 * 299.99457 * 1 2 3 31 31 H 1.08997 * 109.46698 * 239.99898 * 2 1 3 32 32 H 1.09005 * 109.46976 * 120.00337 * 2 1 3 33 33 H 1.07999 * 125.56088 * 0.02562 * 4 3 2 34 34 H 1.08003 * 126.06309 * 180.02562 * 5 4 3 35 35 H 1.08001 * 126.45871 * 179.73736 * 6 5 4 36 36 H 0.96996 * 119.99926 * 5.17866 * 10 8 7 37 37 H 1.08997 * 109.46546 * 300.00044 * 11 10 8 38 38 H 1.08996 * 109.46907 * 60.00163 * 11 10 8 39 39 H 1.09001 * 109.46634 * 59.99950 * 14 12 11 40 40 H 1.08992 * 109.47326 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.46675 * 300.00267 * 14 12 11 42 42 H 0.96994 * 119.99911 * 334.99834 * 15 12 11 43 43 H 1.08998 * 109.46988 * 299.99923 * 18 16 15 44 44 H 1.09001 * 109.46993 * 60.00303 * 18 16 15 45 45 H 0.97001 * 120.00326 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4455 2.0686 -1.0872 5 6 2.8190 3.3119 -0.7004 6 6 2.6251 3.4078 0.6810 7 6 2.1198 2.1968 1.1042 8 6 1.7613 1.8405 2.4812 9 8 1.4154 0.7040 2.7451 10 7 1.8152 2.7717 3.4541 11 6 1.5677 2.3910 4.8469 12 6 1.6882 3.6258 5.7421 13 1 0.8985 4.3343 5.4922 14 6 1.5535 3.2082 7.2079 15 7 2.9940 4.2559 5.5319 16 6 3.1574 5.5691 5.7869 17 8 2.2233 6.2295 6.1898 18 6 4.5008 6.2171 5.5712 19 16 4.3991 7.9732 5.9978 20 6 6.0572 8.4661 5.6627 21 1 6.7738 7.7419 5.3043 22 6 6.4421 9.7852 5.8582 23 7 5.5685 10.6679 6.2944 24 14 8.2002 10.3076 5.5035 25 1 8.3106 10.7455 4.0888 26 1 8.5731 11.4312 6.4000 27 1 9.1143 9.1614 5.7396 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4813 1.6875 -2.0971 34 1 3.2025 4.0896 -1.3442 35 1 2.8303 4.2690 1.2997 36 1 2.0178 3.6939 3.2320 37 1 0.5647 1.9739 4.9368 38 1 2.3004 1.6452 5.1553 39 1 2.3432 2.4997 7.4578 40 1 1.6389 4.0879 7.8457 41 1 0.5819 2.7394 7.3642 42 1 3.7410 3.7278 5.2094 43 1 5.2441 5.7317 6.2036 44 1 4.7903 6.1139 4.5254 45 1 5.8375 11.5898 6.4314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533642015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -33.172550 kcal Electronic energy + Delta-G solvation = -26435.482493 eV Core-core repulsion = 22579.887108 eV Total energy + Delta-G solvation = -3855.595384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.66071 -39.80973 -38.96447 -36.37433 -34.64747 -33.65853 -32.44042 -31.57353 -29.75950 -29.57104 -28.59072 -26.43845 -25.49371 -23.90560 -22.63906 -21.81998 -20.75712 -20.38929 -19.69634 -18.23988 -17.78951 -16.62476 -16.45681 -16.28450 -15.76361 -15.41767 -14.99204 -14.84399 -14.80671 -14.65375 -14.14711 -14.09241 -13.91903 -13.33930 -13.19773 -12.96067 -12.79584 -12.73996 -12.60500 -12.53109 -12.49554 -12.24089 -12.07364 -11.85532 -11.54953 -11.18120 -11.06882 -11.03626 -10.76919 -10.23823 -9.83059 -9.50793 -9.36891 -9.09235 -9.02255 -8.98740 -8.45059 -8.25732 -6.51684 -6.22934 -3.93603 1.23334 2.34003 2.52008 2.94181 3.00810 3.12108 3.18027 3.21811 3.27472 3.31324 3.66983 4.19281 4.36395 4.37683 4.54061 4.68263 4.72229 4.88994 4.93222 5.07088 5.10713 5.12304 5.13955 5.16038 5.31739 5.33465 5.44006 5.46688 5.53198 5.63569 5.74369 5.85438 5.86016 5.91054 5.97639 6.02962 6.11798 6.17829 6.51468 6.55274 6.75534 6.96170 7.23304 7.58433 7.62248 7.93285 8.34066 8.54153 9.22659 10.84429 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002474 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.842981 B =11315.640649 C =13104.259357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.015 3.985 5 C -0.206 4.206 6 C -0.136 4.136 7 C -0.057 4.057 8 C 0.591 3.409 9 O -0.551 6.551 10 N -0.718 5.718 11 C 0.117 3.883 12 C 0.132 3.868 13 H 0.096 0.904 14 C -0.161 4.161 15 N -0.738 5.738 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.408 0.592 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -22.430 -11.977 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.082 5.082 4 C -0.121 4.121 5 C -0.230 4.230 6 C -0.162 4.162 7 C -0.170 4.170 8 C 0.379 3.621 9 O -0.431 6.431 10 N -0.370 5.370 11 C -0.007 4.007 12 C 0.026 3.974 13 H 0.114 0.886 14 C -0.220 4.220 15 N -0.393 5.393 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.045 -22.331 -10.997 26.842 hybrid contribution 2.743 -0.183 -1.031 2.936 sum -7.302 -22.513 -12.028 26.549 Atomic orbital electron populations 1.22067 0.94039 1.03018 1.02915 1.22009 0.96014 0.79635 1.04697 1.44052 1.46551 1.11511 1.06066 1.22037 1.04697 0.93466 0.91868 1.20874 1.09366 0.97269 0.95470 1.21455 1.02882 0.95995 0.95904 1.19980 1.15616 0.93057 0.88319 1.16973 0.76997 0.84695 0.83418 1.90780 1.48537 1.20243 1.83552 1.45638 1.72346 1.12272 1.06740 1.21719 1.02874 0.96696 0.79425 1.21145 0.87364 0.93764 0.95109 0.88589 1.22113 1.02080 1.02519 0.95268 1.46157 1.12571 1.10114 1.70473 1.20341 0.90371 0.81001 0.76313 1.90713 1.42106 1.62501 1.43435 1.23543 0.96205 1.05694 1.05060 1.85394 1.16015 0.95064 1.86794 1.22861 0.96050 0.97614 1.51832 0.90932 1.24989 0.98511 0.95464 0.94610 1.70012 1.34255 1.03392 1.42618 0.86175 0.82696 0.78318 0.78357 1.20246 1.20766 1.19705 0.92373 0.90760 0.91457 0.89394 0.87878 0.81537 0.83866 0.83721 0.75613 0.89811 0.90694 0.92187 0.90981 0.91509 0.76696 0.89224 0.89174 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 10.16 37.16 0.38 -0.82 16 2 C 0.10 0.75 6.11 -4.04 -0.02 0.73 16 3 N -0.41 -3.93 2.76 -112.87 -0.31 -4.24 16 4 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 5 C -0.21 -1.93 10.81 -39.98 -0.43 -2.37 16 6 C -0.14 -1.41 10.35 -39.12 -0.40 -1.82 16 7 C -0.06 -0.63 6.88 -81.98 -0.56 -1.19 16 8 C 0.59 6.81 7.77 -12.85 -0.10 6.71 16 9 O -0.55 -7.40 14.23 5.20 0.07 -7.32 16 10 N -0.72 -6.98 5.36 -61.62 -0.33 -7.31 16 11 C 0.12 1.04 5.24 -4.04 -0.02 1.02 16 12 C 0.13 1.35 2.73 -67.93 -0.19 1.16 16 13 H 0.10 1.15 7.58 -51.93 -0.39 0.75 16 14 C -0.16 -1.57 9.48 37.16 0.35 -1.21 16 15 N -0.74 -8.65 4.52 -53.80 -0.24 -8.89 16 16 C 0.53 9.08 7.81 -10.99 -0.09 9.00 16 17 O -0.51 -10.80 15.52 5.55 0.09 -10.71 16 18 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 7.56 -51.93 -0.39 0.26 16 31 H 0.09 0.45 8.11 -51.93 -0.42 0.02 16 32 H 0.10 0.95 6.75 -51.93 -0.35 0.60 16 33 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.15 1.35 7.49 -52.49 -0.39 0.95 16 36 H 0.41 3.82 7.09 -40.82 -0.29 3.53 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.40 3.82 8.60 -40.82 -0.35 3.46 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -35.34 395.60 -8.91 -44.25 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.79 Total: 5.27 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.86 Total: -4.27 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.15 Total: -45.56 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.16 Total: -18.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.34 -8.91 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533642015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.082 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds