Wall clock time and date at job start Sat Apr 11 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47354 * 2 1 4 4 C 1.35534 * 125.67960 * 260.93235 * 3 2 1 5 5 C 1.35457 * 108.86963 * 179.97438 * 4 3 2 6 6 C 1.39830 * 107.86713 * 0.25534 * 5 4 3 7 7 C 1.37650 * 125.67616 * 80.92548 * 3 2 1 8 8 C 1.46682 * 126.23476 * 0.03649 * 7 3 2 9 9 O 1.21693 * 119.99640 * 5.06157 * 8 7 3 10 10 N 1.34781 * 120.00122 * 185.05500 * 8 7 3 11 11 C 1.46502 * 119.99909 * 185.18022 * 10 8 7 12 12 C 1.52995 * 109.46667 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.47483 * 65.00179 * 12 11 10 14 14 C 1.53007 * 109.46971 * 184.99709 * 12 11 10 15 15 N 1.46498 * 109.47398 * 304.99858 * 12 11 10 16 16 C 1.34772 * 120.00002 * 155.00428 * 15 12 11 17 17 O 1.21285 * 120.00257 * 359.97438 * 16 15 12 18 18 C 1.50704 * 119.99888 * 179.97438 * 16 15 12 19 19 S 1.81002 * 109.47040 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00086 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99741 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00082 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99990 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46870 * 90.00382 * 24 22 20 26 26 H 1.48502 * 109.46892 * 210.00004 * 24 22 20 27 27 H 1.48496 * 109.47335 * 330.00482 * 24 22 20 28 28 H 1.08994 * 109.47435 * 59.99658 * 1 2 3 29 29 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46803 * 299.99457 * 1 2 3 31 31 H 1.08997 * 109.46698 * 239.99898 * 2 1 3 32 32 H 1.09005 * 109.46976 * 120.00337 * 2 1 3 33 33 H 1.07999 * 125.56088 * 0.02562 * 4 3 2 34 34 H 1.08003 * 126.06309 * 180.02562 * 5 4 3 35 35 H 1.08001 * 126.45871 * 179.73736 * 6 5 4 36 36 H 0.96996 * 119.99926 * 5.17866 * 10 8 7 37 37 H 1.08997 * 109.46546 * 300.00044 * 11 10 8 38 38 H 1.08996 * 109.46907 * 60.00163 * 11 10 8 39 39 H 1.09001 * 109.46634 * 59.99950 * 14 12 11 40 40 H 1.08992 * 109.47326 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.46675 * 300.00267 * 14 12 11 42 42 H 0.96994 * 119.99911 * 334.99834 * 15 12 11 43 43 H 1.08998 * 109.46988 * 299.99923 * 18 16 15 44 44 H 1.09001 * 109.46993 * 60.00303 * 18 16 15 45 45 H 0.97001 * 120.00326 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4455 2.0686 -1.0872 5 6 2.8190 3.3119 -0.7004 6 6 2.6251 3.4078 0.6810 7 6 2.1198 2.1968 1.1042 8 6 1.7613 1.8405 2.4812 9 8 1.4154 0.7040 2.7451 10 7 1.8152 2.7717 3.4541 11 6 1.5677 2.3910 4.8469 12 6 1.6882 3.6258 5.7421 13 1 0.8985 4.3343 5.4922 14 6 1.5535 3.2082 7.2079 15 7 2.9940 4.2559 5.5319 16 6 3.1574 5.5691 5.7869 17 8 2.2233 6.2295 6.1898 18 6 4.5008 6.2171 5.5712 19 16 4.3991 7.9732 5.9978 20 6 6.0572 8.4661 5.6627 21 1 6.7738 7.7419 5.3043 22 6 6.4421 9.7852 5.8582 23 7 5.5685 10.6679 6.2944 24 14 8.2002 10.3076 5.5035 25 1 8.3106 10.7455 4.0888 26 1 8.5731 11.4312 6.4000 27 1 9.1143 9.1614 5.7396 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.4813 1.6875 -2.0971 34 1 3.2025 4.0896 -1.3442 35 1 2.8303 4.2690 1.2997 36 1 2.0178 3.6939 3.2320 37 1 0.5647 1.9739 4.9368 38 1 2.3004 1.6452 5.1553 39 1 2.3432 2.4997 7.4578 40 1 1.6389 4.0879 7.8457 41 1 0.5819 2.7394 7.3642 42 1 3.7410 3.7278 5.2094 43 1 5.2441 5.7317 6.2036 44 1 4.7903 6.1139 4.5254 45 1 5.8375 11.5898 6.4314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533642015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:17 Heat of formation + Delta-G solvation = -57.422761 kcal Electronic energy + Delta-G solvation = -26436.534061 eV Core-core repulsion = 22579.887108 eV Total energy + Delta-G solvation = -3856.646952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.37339 -40.93868 -39.98923 -37.43657 -35.38817 -34.58074 -34.53219 -32.72272 -30.57507 -30.22677 -29.91894 -27.63637 -27.22258 -24.52993 -23.46356 -22.79903 -21.61441 -21.44759 -20.50476 -19.82437 -18.87778 -17.94019 -17.48877 -17.15007 -16.86033 -16.60749 -16.37042 -16.28334 -15.94608 -15.54604 -15.31712 -14.89750 -14.74385 -14.59639 -14.55790 -14.05214 -13.97272 -13.62484 -13.47437 -13.25808 -13.21853 -13.14032 -13.10616 -12.95839 -12.87788 -12.84315 -12.57629 -12.14997 -12.06034 -11.70538 -11.12596 -11.11655 -10.92946 -10.25567 -10.24195 -10.18033 -9.69753 -9.16640 -8.63352 -8.32964 -6.09973 0.46067 1.28642 1.43379 1.48246 1.58184 1.61842 1.66671 1.82216 2.21196 2.29516 2.36542 2.39473 3.01323 3.34073 3.53899 3.76184 3.81831 3.99558 4.04737 4.10708 4.16347 4.24867 4.35441 4.38090 4.43534 4.48043 4.54767 4.57582 4.67634 4.74759 4.77441 4.86016 5.00029 5.13709 5.16792 5.22392 5.29178 5.35810 5.44018 5.47882 5.80456 6.02950 6.21712 6.33214 6.41616 6.48646 7.08853 7.09227 7.25100 8.76008 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002474 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.842981 B =11315.640649 C =13104.259357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.413 5.413 4 C 0.026 3.974 5 C -0.226 4.226 6 C -0.145 4.145 7 C -0.085 4.085 8 C 0.589 3.411 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.126 3.874 12 C 0.137 3.863 13 H 0.080 0.920 14 C -0.157 4.157 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.148 6.148 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.409 0.591 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.414 0.586 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -24.594 -13.727 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.087 5.087 4 C -0.110 4.110 5 C -0.249 4.249 6 C -0.171 4.171 7 C -0.198 4.198 8 C 0.378 3.622 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.003 3.997 12 C 0.032 3.968 13 H 0.098 0.902 14 C -0.216 4.216 15 N -0.366 5.366 16 C 0.326 3.674 17 O -0.436 6.436 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.219 0.781 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.251 0.749 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.726 -24.546 -12.749 29.003 hybrid contribution 2.264 0.365 -0.541 2.356 sum -6.461 -24.181 -13.290 28.339 Atomic orbital electron populations 1.22012 0.93912 1.03760 1.01706 1.22138 0.96084 0.78902 1.05416 1.44292 1.46335 1.12065 1.05983 1.22632 1.02522 0.92937 0.92877 1.21167 1.10125 0.98371 0.95238 1.21650 1.02772 0.95975 0.96743 1.20037 1.17223 0.93881 0.88615 1.17117 0.76675 0.84486 0.83920 1.90761 1.49847 1.21124 1.83952 1.45622 1.71881 1.12127 1.06856 1.21675 1.03659 0.95805 0.78600 1.21197 0.85688 0.93765 0.96141 0.90187 1.22072 1.04015 1.01708 0.93777 1.45870 1.13885 1.08292 1.68549 1.19979 0.88965 0.82314 0.76191 1.90708 1.43113 1.63923 1.45882 1.23388 0.98110 1.00294 1.06475 1.85553 1.16874 1.02007 1.87630 1.23198 0.96252 0.98226 1.51593 0.90001 1.26095 1.03399 0.95477 0.94164 1.70176 1.36758 1.03826 1.43983 0.84988 0.76690 0.78120 0.78404 1.19283 1.20430 1.18295 0.91688 0.89086 0.94383 0.86166 0.89621 0.78066 0.82618 0.83491 0.75427 0.89136 0.89581 0.90622 0.93817 0.89388 0.74899 0.87512 0.87063 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.16 71.98 0.73 -1.37 16 2 C 0.09 1.31 6.11 86.38 0.53 1.83 16 3 N -0.41 -7.32 2.76 -511.01 -1.41 -8.74 16 4 C 0.03 0.38 11.36 83.48 0.95 1.32 16 5 C -0.23 -3.88 10.81 22.01 0.24 -3.65 16 6 C -0.14 -2.90 10.35 22.57 0.23 -2.67 16 7 C -0.08 -1.82 6.88 40.35 0.28 -1.54 16 8 C 0.59 13.28 7.77 86.45 0.67 13.96 16 9 O -0.57 -15.21 14.23 -4.32 -0.06 -15.27 16 10 N -0.71 -13.25 5.36 -467.08 -2.50 -15.76 16 11 C 0.13 2.05 5.24 86.38 0.45 2.50 16 12 C 0.14 2.66 2.73 44.99 0.12 2.78 16 13 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 14 C -0.16 -2.85 9.48 71.98 0.68 -2.16 16 15 N -0.71 -15.73 4.52 -442.53 -2.00 -17.73 16 16 C 0.54 18.21 7.81 87.66 0.68 18.89 16 17 O -0.56 -24.08 15.52 -3.04 -0.05 -24.13 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 19 S -0.15 -7.98 20.57 -56.49 -1.16 -9.14 16 20 C -0.54 -30.58 9.50 67.95 0.65 -29.94 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 24 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.74 7.56 -2.38 -0.02 0.72 16 31 H 0.12 0.84 8.11 -2.39 -0.02 0.83 16 32 H 0.09 1.51 6.75 -2.38 -0.02 1.49 16 33 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.15 2.69 7.49 -2.91 -0.02 2.67 16 36 H 0.41 7.39 7.09 -92.71 -0.66 6.73 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.41 6.95 8.60 -92.71 -0.80 6.15 16 43 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 44 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -79.56 395.60 1.81 -77.75 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.44 Total: 26.25 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 7.12 Total: -3.30 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -5.63 Total: -97.38 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.11 Total: -39.40 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.14 kcal Total: -79.56 1.81 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533642015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.330 kcal (2) G-P(sol) polarization free energy of solvation -79.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds