Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21284 * 120.00044 * 2 1 4 4 N 1.34775 * 119.99771 * 180.02562 * 2 1 3 5 5 C 1.39928 * 119.99863 * 184.90999 * 4 2 1 6 6 C 1.38886 * 120.07074 * 322.42719 * 5 4 2 7 7 C 1.38091 * 119.92911 * 180.02562 * 6 5 4 8 8 C 1.38310 * 120.07016 * 359.73059 * 7 6 5 9 9 C 1.38260 * 120.13761 * 0.54508 * 8 7 6 10 10 C 1.50697 * 119.96159 * 179.72848 * 9 8 7 11 11 C 1.50701 * 109.47099 * 269.72273 * 10 9 8 12 12 O 1.21270 * 119.99831 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99899 * 180.02562 * 11 10 9 14 14 C 1.37208 * 120.00385 * 0.02562 * 13 11 10 15 15 H 1.08009 * 119.99926 * 311.39158 * 14 13 11 16 16 C 1.38890 * 120.00490 * 131.39105 * 14 13 11 17 17 N 1.31410 * 120.00343 * 168.14353 * 16 14 13 18 18 Si 1.86803 * 119.99626 * 348.14243 * 16 14 13 19 19 H 1.48501 * 109.46742 * 95.73509 * 18 16 14 20 20 H 1.48503 * 109.47053 * 215.73514 * 18 16 14 21 21 H 1.48499 * 109.47300 * 335.73552 * 18 16 14 22 22 C 1.39430 * 119.99888 * 180.02562 * 13 11 10 23 23 C 1.39064 * 119.69811 * 165.31336 * 22 13 11 24 24 C 1.38380 * 119.09920 * 180.02562 * 23 22 13 25 25 C 1.38827 * 118.49050 * 0.02562 * 24 23 22 26 26 C 1.38140 * 119.31147 * 0.24538 * 25 24 23 27 27 N 1.31885 * 120.85579 * 359.48572 * 26 25 24 28 28 C 1.38136 * 120.07155 * 359.45359 * 9 8 7 29 29 H 1.09003 * 109.47291 * 239.99861 * 1 2 3 30 30 H 1.09005 * 109.47206 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47388 * 119.99355 * 1 2 3 32 32 H 0.96999 * 120.00424 * 4.91398 * 4 2 1 33 33 H 1.08000 * 120.04095 * 0.04002 * 6 5 4 34 34 H 1.08001 * 119.96637 * 180.02562 * 7 6 5 35 35 H 1.07996 * 119.93343 * 180.26890 * 8 7 6 36 36 H 1.09001 * 109.47061 * 149.72757 * 10 9 8 37 37 H 1.08999 * 109.47310 * 29.72795 * 10 9 8 38 38 H 0.96997 * 119.99809 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.45039 * 0.04588 * 23 22 13 40 40 H 1.07997 * 120.75526 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.33874 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.57182 * 179.75202 * 26 25 24 43 43 H 1.07997 * 120.03519 * 180.25126 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5762 -1.1695 0.1032 6 6 4.3231 -0.1872 -0.5342 7 6 5.7000 -0.1926 -0.4303 8 6 6.3352 -1.1715 0.3121 9 6 5.5949 -2.1540 0.9431 10 6 6.2915 -3.2223 1.7460 11 6 6.6079 -4.3950 0.8540 12 8 6.2987 -4.3659 -0.3183 13 7 7.2345 -5.4761 1.3591 14 6 7.5839 -5.5092 2.6855 15 1 8.1014 -4.6712 3.1288 16 6 7.2723 -6.6204 3.4583 17 7 7.8018 -6.7595 4.6529 18 14 6.1002 -7.9172 2.7994 19 1 6.8794 -9.0228 2.1864 20 1 5.2757 -8.4510 3.9132 21 1 5.2140 -7.3088 1.7749 22 6 7.5277 -6.5609 0.5336 23 6 8.4291 -7.5291 0.9625 24 6 8.7114 -8.6002 0.1331 25 6 8.0804 -8.6660 -1.1017 26 6 7.2001 -7.6654 -1.4654 27 7 6.9465 -6.6589 -0.6518 28 6 4.2172 -2.1542 0.8431 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3634 -0.5137 -0.8900 32 1 1.6985 -2.0057 -0.0729 33 1 3.8275 0.5802 -1.1103 34 1 6.2814 0.5712 -0.9254 35 1 7.4120 -1.1711 0.3954 36 1 5.6415 -3.5484 2.5579 37 1 7.2164 -2.8207 2.1600 38 1 7.5844 -7.5357 5.1924 39 1 8.9021 -7.4464 1.9299 40 1 9.4069 -9.3676 0.4395 41 1 8.2791 -9.4885 -1.7728 42 1 6.7100 -7.7102 -2.4267 43 1 3.6393 -2.9196 1.3396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537821502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -1.899937 kcal Electronic energy + Delta-G solvation = -28635.735209 eV Core-core repulsion = 24646.051956 eV Total energy + Delta-G solvation = -3989.683253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89901 -41.45430 -40.12926 -39.19182 -36.97672 -35.92632 -34.23489 -33.62429 -33.14206 -31.75445 -31.25563 -29.64498 -28.42407 -27.16762 -24.66223 -23.94327 -23.54048 -23.13565 -21.43184 -20.82741 -19.97632 -18.49804 -18.11420 -17.82095 -17.70574 -17.20552 -17.07609 -16.72642 -16.52805 -16.10067 -15.74323 -15.54022 -15.48848 -15.13969 -14.88944 -14.59446 -14.48994 -14.22619 -14.02292 -13.80540 -13.57944 -13.38349 -13.27991 -13.02587 -12.91274 -12.85703 -12.61622 -12.53051 -12.15930 -12.12404 -11.45082 -11.32847 -10.97337 -10.94240 -10.89147 -10.48683 -9.96139 -9.69388 -9.14034 -9.06844 -8.59823 -6.42909 0.23851 0.30554 0.40837 0.47978 1.16343 1.24042 1.34419 1.55632 1.89252 2.09438 2.11954 2.32368 2.71826 2.88954 3.18175 3.67727 3.77755 3.80553 3.95548 4.06573 4.17433 4.20304 4.31572 4.38392 4.39479 4.40610 4.47383 4.56840 4.59987 4.64571 4.75433 4.79961 4.96561 5.01844 5.08950 5.17817 5.32566 5.35779 5.37269 5.44863 5.52870 5.67850 5.83880 5.98008 6.07505 6.23492 6.42651 6.76318 7.01362 7.10751 7.32544 7.73890 8.48628 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.003134 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.362185 B = 8932.765109 C = 9312.202018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.577 6.577 4 N -0.666 5.666 5 C 0.133 3.867 6 C -0.135 4.135 7 C -0.103 4.103 8 C -0.129 4.129 9 C -0.052 4.052 10 C -0.075 4.075 11 C 0.491 3.509 12 O -0.538 6.538 13 N -0.423 5.423 14 C -0.356 4.356 15 H 0.102 0.898 16 C 0.068 3.932 17 N -0.879 5.879 18 Si 0.900 3.100 19 H -0.245 1.245 20 H -0.278 1.278 21 H -0.289 1.289 22 C 0.326 3.674 23 C -0.217 4.217 24 C -0.060 4.060 25 C -0.210 4.210 26 C 0.103 3.897 27 N -0.525 5.525 28 C -0.138 4.138 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.425 0.575 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.133 0.867 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.177 0.823 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 3.048 -7.745 12.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.456 6.456 4 N -0.313 5.313 5 C 0.039 3.961 6 C -0.155 4.155 7 C -0.122 4.122 8 C -0.147 4.147 9 C -0.053 4.053 10 C -0.114 4.114 11 C 0.281 3.719 12 O -0.414 6.414 13 N -0.138 5.138 14 C -0.483 4.483 15 H 0.119 0.881 16 C -0.140 4.140 17 N -0.513 5.513 18 Si 0.726 3.274 19 H -0.169 1.169 20 H -0.204 1.204 21 H -0.215 1.215 22 C 0.098 3.902 23 C -0.240 4.240 24 C -0.086 4.086 25 C -0.231 4.231 26 C -0.056 4.056 27 N -0.241 5.241 28 C -0.158 4.158 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.264 0.736 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.150 0.850 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.194 0.806 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.333 4.464 -8.324 13.278 hybrid contribution 0.130 -1.700 0.539 1.788 sum -9.203 2.763 -7.785 12.367 Atomic orbital electron populations 1.21952 0.86556 1.06705 1.06822 1.21953 0.92742 0.82211 0.73662 1.90707 1.71903 1.32824 1.50174 1.43611 1.04282 1.10937 1.72482 1.17727 0.83843 0.97120 0.97416 1.21224 0.94186 0.99593 1.00522 1.21222 0.94036 0.98626 0.98280 1.21177 1.00345 0.94994 0.98219 1.19358 0.93316 0.95002 0.97588 1.20421 1.02872 0.91020 0.97134 1.21383 0.77039 0.84998 0.88466 1.90641 1.51154 1.81530 1.18084 1.41763 1.50231 1.13202 1.08612 1.18944 1.40445 1.07311 0.81589 0.88055 1.25636 0.95365 0.98331 0.94703 1.69697 1.40563 1.30221 1.10836 0.86477 0.80896 0.81840 0.78230 1.16906 1.20375 1.21459 1.19324 0.91892 0.90198 0.88829 1.21798 1.01346 0.97324 1.03539 1.21787 0.97508 0.96151 0.93166 1.22305 1.00626 1.02029 0.98186 1.23163 0.95186 0.88613 0.98608 1.67604 1.26270 1.26111 1.04129 1.20852 0.94378 1.00060 1.00489 0.86836 0.88512 0.86554 0.73597 0.85282 0.83535 0.85294 0.87590 0.87253 0.90449 0.84950 0.81964 0.81024 0.80608 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.32 71.24 0.74 -0.96 16 2 C 0.50 11.15 7.77 87.66 0.68 11.83 16 3 O -0.58 -18.12 14.67 -3.04 -0.04 -18.16 16 4 N -0.67 -14.98 5.33 -303.51 -1.62 -16.60 16 5 C 0.13 4.03 6.25 38.15 0.24 4.27 16 6 C -0.14 -4.24 8.69 22.39 0.19 -4.04 16 7 C -0.10 -3.09 10.04 22.25 0.22 -2.87 16 8 C -0.13 -4.22 9.70 22.29 0.22 -4.00 16 9 C -0.05 -1.83 4.37 -19.88 -0.09 -1.91 16 10 C -0.08 -2.88 4.61 29.10 0.13 -2.75 16 11 C 0.49 23.05 7.58 87.66 0.66 23.72 16 12 O -0.54 -27.41 14.40 -3.00 -0.04 -27.45 16 13 N -0.42 -20.82 2.28 -464.37 -1.06 -21.88 16 14 C -0.36 -17.85 8.04 84.01 0.68 -17.17 16 15 H 0.10 5.23 7.64 -2.91 -0.02 5.21 16 16 C 0.07 3.41 4.21 84.91 0.36 3.76 16 17 N -0.88 -45.39 13.96 21.65 0.30 -45.09 16 18 Si 0.90 41.76 24.52 68.60 1.68 43.44 16 19 H -0.25 -10.74 6.26 99.48 0.62 -10.11 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.29 -14.78 7.04 99.48 0.70 -14.08 16 22 C 0.33 15.58 4.99 132.90 0.66 16.24 16 23 C -0.22 -9.30 6.13 22.50 0.14 -9.16 16 24 C -0.06 -2.03 9.99 22.44 0.22 -1.80 16 25 C -0.21 -6.28 10.11 22.39 0.23 -6.05 16 26 C 0.10 3.67 11.18 84.66 0.95 4.62 16 27 N -0.52 -24.38 8.03 -192.95 -1.55 -25.93 16 28 C -0.14 -4.52 9.62 22.39 0.22 -4.30 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.03 8.12 -2.38 -0.02 1.02 16 31 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.43 6.74 8.83 -92.71 -0.82 5.93 16 33 H 0.13 4.05 6.41 -2.91 -0.02 4.03 16 34 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.11 3.98 8.04 -2.39 -0.02 3.96 16 37 H 0.11 3.93 7.75 -2.39 -0.02 3.91 16 38 H 0.29 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.13 6.06 6.15 -2.91 -0.02 6.04 16 40 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 41 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -74.33 363.06 4.26 -70.07 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.15 Total: 32.18 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.45 Total: 9.42 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.92 Total: -109.50 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.09 Total: -45.61 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.68 Total: 43.44 kcal Total: -74.33 4.26 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.169 kcal (2) G-P(sol) polarization free energy of solvation -74.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds