Wall clock time and date at job start Sat Apr 11 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 120.00259 * 2 1 4 4 C 1.34775 * 120.00185 * 180.02562 * 2 1 3 5 5 O 1.21554 * 119.99853 * 359.59896 * 4 2 1 6 6 C 1.47865 * 120.00473 * 179.60817 * 4 2 1 7 7 C 1.39717 * 120.06397 * 27.82836 * 6 4 2 8 8 C 1.38088 * 120.15628 * 180.02562 * 7 6 4 9 9 C 1.38069 * 120.30796 * 359.97438 * 8 7 6 10 10 C 1.39752 * 120.13321 * 359.97438 * 9 8 7 11 11 C 1.47705 * 120.08080 * 180.02562 * 10 9 8 12 12 O 1.21570 * 120.00140 * 200.40853 * 11 10 9 13 13 N 1.34777 * 119.99676 * 20.40944 * 11 10 9 14 14 C 1.37007 * 120.00593 * 10.68859 * 13 11 10 15 15 H 1.08001 * 119.99519 * 53.44025 * 14 13 11 16 16 C 1.38970 * 120.00320 * 233.44456 * 14 13 11 17 17 N 1.31371 * 120.00205 * 5.63824 * 16 14 13 18 18 Si 1.86806 * 120.00057 * 185.63718 * 16 14 13 19 19 H 1.48504 * 109.46898 * 59.99788 * 18 16 14 20 20 H 1.48496 * 109.47308 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46913 * 300.00128 * 18 16 14 22 22 C 1.39350 * 119.99758 * 190.69256 * 13 11 10 23 23 C 1.39080 * 119.69933 * 17.01511 * 22 13 11 24 24 C 1.38375 * 119.09953 * 180.02562 * 23 22 13 25 25 C 1.38832 * 118.49277 * 359.97438 * 24 23 22 26 26 C 1.38149 * 119.31527 * 359.97438 * 25 24 23 27 27 N 1.31881 * 120.84908 * 359.72776 * 26 25 24 28 28 C 1.39267 * 120.07017 * 207.56104 * 6 4 2 29 29 H 1.08993 * 109.46840 * 90.00013 * 1 2 3 30 30 H 1.08999 * 109.46866 * 329.99305 * 1 2 3 31 31 H 1.09001 * 109.46410 * 209.99651 * 1 2 3 32 32 H 1.09000 * 109.47011 * 84.40468 * 3 2 1 33 33 H 1.08993 * 109.47320 * 204.41011 * 3 2 1 34 34 H 1.08999 * 109.46914 * 324.41533 * 3 2 1 35 35 H 1.07994 * 119.92488 * 0.02562 * 7 6 4 36 36 H 1.07998 * 119.84044 * 179.97438 * 8 7 6 37 37 H 1.07994 * 119.93452 * 179.97438 * 9 8 7 38 38 H 0.97003 * 120.00223 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.45250 * 359.97223 * 23 22 13 40 40 H 1.07998 * 120.75836 * 179.97438 * 24 23 22 41 41 H 1.08004 * 120.34274 * 180.02562 * 25 24 23 42 42 H 1.07998 * 119.57826 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.15222 * 359.97438 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1390 -1.1672 -0.0005 5 8 1.5312 -2.2198 0.0064 6 6 3.6176 -1.1673 -0.0093 7 6 4.3209 -0.0963 0.5479 8 6 5.7017 -0.0941 0.5403 9 6 6.3971 -1.1489 -0.0167 10 6 5.7062 -2.2271 -0.5764 11 6 6.4513 -3.3552 -1.1714 12 8 5.9038 -4.0925 -1.9681 13 7 7.7380 -3.5672 -0.8310 14 6 8.2906 -2.8827 0.2193 15 1 7.8098 -2.8977 1.1863 16 6 9.4696 -2.1691 0.0405 17 7 9.9951 -2.0586 -1.1584 18 14 10.3071 -1.3669 1.5050 19 1 10.6654 -2.4079 2.5016 20 1 11.5385 -0.6719 1.0515 21 1 9.3835 -0.3840 2.1262 22 6 8.5065 -4.4825 -1.5476 23 6 8.0815 -4.9062 -2.8022 24 6 8.8540 -5.8158 -3.5027 25 6 10.0298 -6.2718 -2.9222 26 6 10.3915 -5.8074 -1.6724 27 7 9.6381 -4.9357 -1.0307 28 6 4.3120 -2.2374 -0.5679 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 0.8899 0.5139 31 1 -0.3632 -0.8901 0.5138 32 1 2.2925 1.6334 1.0228 33 1 3.1896 1.1155 -0.4247 34 1 1.6555 2.0012 -0.5980 35 1 3.7834 0.7319 0.9855 36 1 6.2402 0.7366 0.9720 37 1 7.4770 -1.1408 -0.0197 38 1 10.8183 -1.5608 -1.2832 39 1 7.1607 -4.5310 -3.2238 40 1 8.5492 -6.1632 -4.4788 41 1 10.6556 -6.9817 -3.4426 42 1 11.3055 -6.1590 -1.2170 43 1 3.7731 -3.0699 -0.9956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537821604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:21 Heat of formation + Delta-G solvation = 29.555069 kcal Electronic energy + Delta-G solvation = -29112.194354 eV Core-core repulsion = 25123.875092 eV Total energy + Delta-G solvation = -3988.319262 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99606 -41.31763 -40.00497 -38.71249 -37.03568 -36.75964 -33.79456 -33.02871 -32.87258 -32.04189 -30.79256 -28.82765 -27.57062 -27.21098 -25.36534 -24.33472 -23.76888 -23.19285 -21.70476 -20.74252 -19.87216 -18.59443 -17.77903 -17.50410 -17.35530 -17.03683 -16.96257 -16.76196 -16.64269 -16.04827 -15.74458 -15.58258 -15.02677 -14.98359 -14.63824 -14.49952 -14.38071 -14.24244 -13.86860 -13.65732 -13.59238 -13.39101 -13.26684 -13.18885 -12.98618 -12.77994 -12.71835 -12.29199 -12.13817 -11.97146 -11.12981 -11.00904 -10.86205 -10.50495 -10.42039 -10.01890 -10.01412 -9.86547 -9.66758 -8.90544 -8.30244 -6.27098 -0.22893 0.05805 0.54480 0.68587 1.44833 1.51602 1.57892 1.63560 1.90464 2.06962 2.22193 2.54919 2.87614 3.00429 3.43109 3.47373 3.79051 3.94503 4.00421 4.05921 4.17185 4.31865 4.38293 4.40669 4.46686 4.48879 4.49905 4.55805 4.69841 4.74985 4.86771 4.91834 4.93762 4.95400 5.07557 5.21443 5.29905 5.37227 5.45399 5.49996 5.51602 5.61151 5.72607 5.93921 6.08268 6.23093 6.38640 6.92029 7.00308 7.02844 7.58289 7.75412 8.70424 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003729 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.205359 B = 7505.989654 C = 9140.107343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.612 5.612 3 C 0.047 3.953 4 C 0.556 3.444 5 O -0.586 6.586 6 C -0.166 4.166 7 C -0.061 4.061 8 C -0.140 4.140 9 C -0.049 4.049 10 C -0.139 4.139 11 C 0.520 3.480 12 O -0.591 6.591 13 N -0.384 5.384 14 C -0.362 4.362 15 H 0.090 0.910 16 C 0.041 3.959 17 N -0.874 5.874 18 Si 0.974 3.026 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.236 1.236 22 C 0.366 3.634 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.216 4.216 26 C 0.103 3.897 27 N -0.506 5.506 28 C -0.030 4.030 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.190 0.810 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.172 0.828 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 10.904 2.945 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C -0.093 4.093 4 C 0.346 3.654 5 O -0.468 6.468 6 C -0.169 4.169 7 C -0.078 4.078 8 C -0.158 4.158 9 C -0.067 4.067 10 C -0.142 4.142 11 C 0.313 3.687 12 O -0.477 6.477 13 N -0.093 5.093 14 C -0.489 4.489 15 H 0.107 0.893 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.796 3.204 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.159 1.159 22 C 0.138 3.862 23 C -0.258 4.258 24 C -0.092 4.092 25 C -0.237 4.237 26 C -0.057 4.057 27 N -0.220 5.220 28 C -0.051 4.051 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.207 0.793 36 H 0.187 0.813 37 H 0.181 0.819 38 H 0.083 0.917 39 H 0.151 0.849 40 H 0.172 0.828 41 H 0.182 0.818 42 H 0.189 0.811 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.565 10.492 3.298 13.348 hybrid contribution 0.407 -0.681 -0.614 1.003 sum -7.158 9.811 2.685 12.438 Atomic orbital electron populations 1.21825 0.77571 1.04064 1.02565 1.47729 1.08114 1.06256 1.72232 1.22841 0.98627 0.83693 1.04159 1.18504 0.87298 0.83848 0.75799 1.90738 1.70628 1.32983 1.52439 1.19649 0.92556 0.97572 1.07098 1.22555 0.94575 0.96377 0.94340 1.21614 0.94048 0.99091 1.01038 1.23028 1.04104 0.90599 0.88991 1.19589 0.92945 0.96598 1.05090 1.19146 0.82647 0.85060 0.81808 1.90519 1.69960 1.49306 1.37905 1.40996 1.08373 1.32040 1.27924 1.19248 1.10456 1.29346 0.89816 0.89291 1.26171 0.96341 0.95014 0.99137 1.69912 1.19488 1.37638 1.23551 0.85308 0.78392 0.78769 0.77940 1.20169 1.20688 1.15918 1.18922 0.89747 0.88443 0.89128 1.22414 1.04196 1.03631 0.95534 1.21678 0.93522 0.94258 0.99740 1.22183 0.98767 1.04975 0.97800 1.22987 0.98203 0.91634 0.92833 1.67033 1.05415 1.11896 1.37682 1.21075 0.92347 0.96852 0.94794 0.92236 0.87210 0.92446 0.88833 0.89251 0.88518 0.79305 0.81257 0.81932 0.91673 0.84907 0.82757 0.81762 0.81081 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.47 127.77 1.34 2.69 16 2 N -0.61 -12.89 3.27 -875.34 -2.87 -15.76 16 3 C 0.05 0.54 8.75 127.77 1.12 1.66 16 4 C 0.56 17.70 7.48 86.79 0.65 18.35 16 5 O -0.59 -23.89 16.23 -3.89 -0.06 -23.95 16 6 C -0.17 -5.37 5.51 -20.12 -0.11 -5.48 16 7 C -0.06 -1.44 7.47 22.59 0.17 -1.27 16 8 C -0.14 -3.76 10.02 22.19 0.22 -3.53 16 9 C -0.05 -1.88 8.36 22.60 0.19 -1.69 16 10 C -0.14 -6.20 5.67 -20.12 -0.11 -6.31 16 11 C 0.52 27.37 7.26 86.75 0.63 28.00 16 12 O -0.59 -33.03 13.44 -3.94 -0.05 -33.09 16 13 N -0.38 -20.62 2.65 -467.57 -1.24 -21.86 16 14 C -0.36 -18.34 5.31 84.06 0.45 -17.89 16 15 H 0.09 4.41 7.52 -2.91 -0.02 4.39 16 16 C 0.04 2.00 3.82 84.94 0.32 2.32 16 17 N -0.87 -45.67 12.25 21.66 0.27 -45.41 16 18 Si 0.97 37.32 29.54 68.60 2.03 39.34 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.28 -10.72 7.11 99.48 0.71 -10.02 16 21 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 22 C 0.37 19.51 6.07 132.93 0.81 20.32 16 23 C -0.23 -11.61 8.80 22.50 0.20 -11.41 16 24 C -0.07 -2.59 10.17 22.44 0.23 -2.36 16 25 C -0.22 -7.59 10.11 22.39 0.23 -7.37 16 26 C 0.10 4.15 11.18 84.66 0.95 5.10 16 27 N -0.51 -25.54 8.75 -192.99 -1.69 -27.22 16 28 C -0.03 -1.26 9.13 22.80 0.21 -1.05 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 31 H 0.06 1.21 7.42 -2.39 -0.02 1.19 16 32 H 0.09 0.56 7.35 -2.39 -0.02 0.54 16 33 H 0.09 1.20 4.76 -2.39 -0.01 1.19 16 34 H 0.10 0.64 8.11 -2.39 -0.02 0.62 16 35 H 0.19 2.57 4.53 -2.91 -0.01 2.56 16 36 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.16 6.93 4.19 -2.91 -0.01 6.92 16 38 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 39 H 0.13 7.01 5.40 -2.91 -0.02 6.99 16 40 H 0.15 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.17 5.55 8.06 -2.91 -0.02 5.52 16 43 H 0.11 4.93 7.61 -2.91 -0.02 4.91 16 Total: -1.00 -78.66 356.66 4.92 -73.73 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 1.07 Total: 34.15 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 7.47 Total: 20.07 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.53 Total: -110.25 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -0.12 Total: -57.04 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.34 kcal Total: -78.66 4.92 -73.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537821604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.285 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds