Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47750 * 2 1 4 4 N 1.46506 * 109.47026 * 119.99926 * 2 1 3 5 5 C 1.34767 * 120.00076 * 274.99980 * 4 2 1 6 6 O 1.21695 * 120.00469 * 359.97438 * 5 4 2 7 7 C 1.46587 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.36645 * 125.45973 * 179.97438 * 7 5 4 9 9 C 1.37477 * 113.29856 * 179.97438 * 8 7 5 10 10 C 1.33821 * 115.09742 * 0.02562 * 9 8 7 11 11 S 1.70610 * 110.95535 * 359.72365 * 10 9 8 12 12 C 1.50700 * 109.47214 * 239.99875 * 2 1 3 13 13 O 1.21284 * 120.00103 * 240.00242 * 12 2 1 14 14 N 1.34771 * 119.99902 * 59.99723 * 12 2 1 15 15 C 1.46497 * 120.00194 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47596 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47775 * 180.02562 * 16 15 14 18 18 N 1.46490 * 109.47759 * 180.02562 * 17 16 15 19 19 C 1.46506 * 120.00367 * 89.99676 * 18 17 16 20 20 C 1.36943 * 120.00114 * 270.00498 * 18 17 16 21 21 H 1.07999 * 119.99554 * 23.03544 * 20 18 17 22 22 C 1.38809 * 119.99881 * 203.04140 * 20 18 17 23 23 N 1.31616 * 120.00253 * 12.93803 * 22 20 18 24 24 Si 1.86799 * 119.99777 * 192.93414 * 22 20 18 25 25 H 1.48500 * 109.47220 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47250 * 120.00211 * 24 22 20 27 27 H 1.48504 * 109.46994 * 240.00062 * 24 22 20 28 28 H 1.08998 * 109.47009 * 300.00033 * 1 2 3 29 29 H 1.08999 * 109.47007 * 59.99630 * 1 2 3 30 30 H 1.09002 * 109.47618 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99452 * 95.00323 * 4 2 1 32 32 H 1.07999 * 123.35220 * 359.97438 * 8 7 5 33 33 H 1.07995 * 122.44870 * 180.02562 * 9 8 7 34 34 H 1.08002 * 124.51781 * 180.02562 * 10 9 8 35 35 H 0.97003 * 120.00100 * 0.02562 * 14 12 2 36 36 H 1.08995 * 109.47499 * 300.00684 * 15 14 12 37 37 H 1.09002 * 109.47272 * 60.00707 * 15 14 12 38 38 H 1.09004 * 109.47019 * 300.00829 * 16 15 14 39 39 H 1.09000 * 109.46885 * 60.00165 * 16 15 14 40 40 H 1.09006 * 109.46808 * 300.00546 * 17 16 15 41 41 H 1.09000 * 109.47005 * 59.99963 * 17 16 15 42 42 H 1.09001 * 109.47045 * 95.12574 * 19 18 17 43 43 H 1.08994 * 109.47204 * 215.12771 * 19 18 17 44 44 H 1.09001 * 109.46402 * 335.12659 * 19 18 17 45 45 H 0.97003 * 120.00131 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1626 2.4117 7 6 2.6361 -0.7092 3.5539 8 6 2.8094 -0.1387 4.7834 9 6 3.2811 -1.0179 5.7292 10 6 3.4880 -2.2654 5.2914 11 16 3.0870 -2.4066 3.6391 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4545 15 6 2.1955 -0.9403 -3.6507 16 6 1.6859 -0.2188 -4.9000 17 6 2.1958 -0.9400 -6.1492 18 7 1.7084 -0.2489 -7.3453 19 6 2.5009 0.8286 -7.9430 20 6 0.5117 -0.6099 -7.9049 21 1 -0.2361 -1.1080 -7.3057 22 6 0.2600 -0.3356 -9.2421 23 7 1.2439 0.0330 -10.0348 24 14 -1.4751 -0.4898 -9.9166 25 1 -2.3927 -0.9163 -8.8297 26 1 -1.9173 0.8235 -10.4503 27 1 -1.4948 -1.4988 -11.0061 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6318 1.1526 32 1 2.5970 0.8996 4.9914 33 1 3.4707 -0.7233 6.7507 34 1 3.8550 -3.0759 5.9036 35 1 1.1493 0.5388 -2.5435 36 1 3.2854 -0.9399 -3.6505 37 1 1.8325 -1.9681 -3.6509 38 1 0.5958 -0.2188 -4.9003 39 1 2.0491 0.8089 -4.8996 40 1 3.2858 -0.9404 -6.1490 41 1 1.8321 -1.9676 -6.1494 42 1 3.1159 0.4243 -8.7470 43 1 1.8334 1.5910 -8.3443 44 1 3.1432 1.2720 -7.1821 45 1 1.0679 0.2251 -10.9693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566479234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = -21.371071 kcal Electronic energy + Delta-G solvation = -25770.939713 eV Core-core repulsion = 21915.856080 eV Total energy + Delta-G solvation = -3855.083634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.66636 -39.48043 -37.87835 -36.38750 -35.29038 -34.88002 -32.39250 -31.49737 -30.09267 -29.47134 -26.11134 -25.80370 -25.48116 -24.13082 -22.19033 -21.56406 -20.74545 -20.25686 -19.64792 -19.16648 -17.23468 -16.81662 -16.69897 -16.13798 -15.96934 -15.67036 -15.31094 -15.12792 -14.71165 -14.40998 -14.06563 -13.79407 -13.51221 -13.35490 -13.20865 -13.01327 -12.84860 -12.78891 -12.66946 -12.60798 -11.98613 -11.74081 -11.48106 -11.40700 -11.06202 -10.83102 -10.81915 -10.50830 -10.48316 -10.22254 -10.07577 -9.87408 -9.82517 -9.60554 -9.30183 -9.12351 -9.04667 -8.56621 -6.75862 -5.73527 -3.20896 0.06382 1.02402 1.43657 1.95521 2.38309 2.48139 2.82332 3.18447 3.36178 3.43397 3.45265 4.29833 4.45823 4.48623 4.55749 4.69872 4.79630 4.85579 5.02302 5.15184 5.24497 5.38536 5.40780 5.41840 5.50385 5.71313 5.74866 5.78282 5.83727 5.86138 5.92238 6.04594 6.09696 6.37305 6.43988 6.72013 6.73191 6.90361 7.04117 7.33052 7.36186 7.72208 7.74160 7.79522 7.98899 8.38847 9.22636 9.86252 10.35146 11.31251 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.001646 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.665902 B =17004.851273 C =17193.054242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.118 0.882 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.270 4.270 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.212 5.788 12 C 0.508 3.492 13 O -0.540 6.540 14 N -0.717 5.717 15 C 0.120 3.880 16 C -0.151 4.151 17 C 0.155 3.845 18 N -0.603 5.603 19 C 0.162 3.838 20 C -0.255 4.255 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.907 5.907 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.408 0.592 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.040 0.960 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -2.414 30.771 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.382 3.618 6 O -0.407 6.407 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.479 5.521 12 C 0.292 3.708 13 O -0.418 6.418 14 N -0.368 5.368 15 C -0.004 4.004 16 C -0.192 4.192 17 C 0.027 3.973 18 N -0.325 5.325 19 C 0.018 3.982 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.552 5.552 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.262 -3.461 29.588 29.968 hybrid contribution -1.022 1.027 0.614 1.574 sum 2.240 -2.434 30.203 30.383 Atomic orbital electron populations 1.22154 0.92380 1.03446 1.03953 1.20822 0.95985 0.98201 0.83303 0.86430 1.45599 1.67507 1.14651 1.08461 1.16890 0.77190 0.86030 0.81657 1.90838 1.50429 1.14811 1.84627 1.24575 1.16609 0.98900 0.98913 1.20821 0.96221 1.01503 0.90168 1.20069 1.04080 0.92501 1.01639 1.25404 1.08156 1.02377 1.00867 1.83276 1.58359 1.05510 1.04932 1.20476 0.80522 0.84837 0.84919 1.90702 1.38067 1.26365 1.86638 1.46075 1.53063 1.32079 1.05594 1.21523 0.99232 0.96600 0.83003 1.22552 1.01926 1.00311 0.94427 1.20587 0.96096 0.94817 0.85787 1.43897 1.22324 1.37932 1.28384 1.20791 0.93763 0.90022 0.93673 1.19220 0.91431 1.35614 0.92244 0.91387 1.25036 0.97485 1.01381 0.95823 1.70079 1.29431 1.51047 1.04680 0.86198 0.84319 0.77307 0.78789 1.20329 1.21641 1.21718 0.90638 0.90442 0.91542 0.75487 0.82783 0.83603 0.81261 0.76217 0.91577 0.91380 0.91442 0.92124 0.94414 0.93264 0.95074 0.94163 0.98405 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.38 37.16 0.35 -0.97 16 2 C 0.13 1.24 2.98 -69.08 -0.21 1.04 16 3 H 0.12 1.16 7.58 -51.93 -0.39 0.77 16 4 N -0.71 -7.32 4.95 -56.28 -0.28 -7.59 16 5 C 0.60 6.69 7.75 -12.90 -0.10 6.59 16 6 O -0.53 -7.28 16.50 5.19 0.09 -7.20 16 7 C -0.27 -2.50 6.45 -36.79 -0.24 -2.74 16 8 C -0.05 -0.43 10.01 -40.43 -0.40 -0.84 16 9 C -0.15 -0.94 10.15 -41.41 -0.42 -1.36 16 10 C -0.23 -1.32 10.92 29.18 0.32 -1.00 16 11 S 0.21 1.47 22.16 -107.50 -2.38 -0.91 16 12 C 0.51 6.06 7.22 -10.99 -0.08 5.98 16 13 O -0.54 -8.13 15.84 5.55 0.09 -8.04 16 14 N -0.72 -8.01 5.45 -60.30 -0.33 -8.34 16 15 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 16 C -0.15 -2.35 5.65 -26.73 -0.15 -2.50 16 17 C 0.16 3.03 5.64 -4.05 -0.02 3.01 16 18 N -0.60 -14.85 2.92 -181.12 -0.53 -15.38 16 19 C 0.16 3.95 8.98 59.85 0.54 4.49 16 20 C -0.26 -6.90 9.65 -15.06 -0.15 -7.05 16 21 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 22 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 23 N -0.91 -26.41 10.71 55.49 0.59 -25.82 16 24 Si 0.90 21.62 29.57 -169.99 -5.03 16.60 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.52 7.56 -51.93 -0.39 0.13 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.41 4.04 6.90 -40.82 -0.28 3.76 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.40 3.62 7.89 -40.82 -0.32 3.29 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 42 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 43 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 44 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -33.40 392.94 -9.29 -42.69 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.76 Total: 1.91 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.67 Total: 6.16 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.54 Total: -57.13 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.17 Total: -15.23 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.40 -9.29 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566479234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.321 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds