Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47750 * 2 1 4 4 N 1.46506 * 109.47026 * 119.99926 * 2 1 3 5 5 C 1.34767 * 120.00076 * 274.99980 * 4 2 1 6 6 O 1.21695 * 120.00469 * 359.97438 * 5 4 2 7 7 C 1.46587 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.36645 * 125.45973 * 179.97438 * 7 5 4 9 9 C 1.37477 * 113.29856 * 179.97438 * 8 7 5 10 10 C 1.33821 * 115.09742 * 0.02562 * 9 8 7 11 11 S 1.70610 * 110.95535 * 359.72365 * 10 9 8 12 12 C 1.50700 * 109.47214 * 239.99875 * 2 1 3 13 13 O 1.21284 * 120.00103 * 240.00242 * 12 2 1 14 14 N 1.34771 * 119.99902 * 59.99723 * 12 2 1 15 15 C 1.46497 * 120.00194 * 179.97438 * 14 12 2 16 16 C 1.53001 * 109.47596 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47775 * 180.02562 * 16 15 14 18 18 N 1.46490 * 109.47759 * 180.02562 * 17 16 15 19 19 C 1.46506 * 120.00367 * 89.99676 * 18 17 16 20 20 C 1.36943 * 120.00114 * 270.00498 * 18 17 16 21 21 H 1.07999 * 119.99554 * 23.03544 * 20 18 17 22 22 C 1.38809 * 119.99881 * 203.04140 * 20 18 17 23 23 N 1.31616 * 120.00253 * 12.93803 * 22 20 18 24 24 Si 1.86799 * 119.99777 * 192.93414 * 22 20 18 25 25 H 1.48500 * 109.47220 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47250 * 120.00211 * 24 22 20 27 27 H 1.48504 * 109.46994 * 240.00062 * 24 22 20 28 28 H 1.08998 * 109.47009 * 300.00033 * 1 2 3 29 29 H 1.08999 * 109.47007 * 59.99630 * 1 2 3 30 30 H 1.09002 * 109.47618 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99452 * 95.00323 * 4 2 1 32 32 H 1.07999 * 123.35220 * 359.97438 * 8 7 5 33 33 H 1.07995 * 122.44870 * 180.02562 * 9 8 7 34 34 H 1.08002 * 124.51781 * 180.02562 * 10 9 8 35 35 H 0.97003 * 120.00100 * 0.02562 * 14 12 2 36 36 H 1.08995 * 109.47499 * 300.00684 * 15 14 12 37 37 H 1.09002 * 109.47272 * 60.00707 * 15 14 12 38 38 H 1.09004 * 109.47019 * 300.00829 * 16 15 14 39 39 H 1.09000 * 109.46885 * 60.00165 * 16 15 14 40 40 H 1.09006 * 109.46808 * 300.00546 * 17 16 15 41 41 H 1.09000 * 109.47005 * 59.99963 * 17 16 15 42 42 H 1.09001 * 109.47045 * 95.12574 * 19 18 17 43 43 H 1.08994 * 109.47204 * 215.12771 * 19 18 17 44 44 H 1.09001 * 109.46402 * 335.12659 * 19 18 17 45 45 H 0.97003 * 120.00131 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1626 2.4117 7 6 2.6361 -0.7092 3.5539 8 6 2.8094 -0.1387 4.7834 9 6 3.2811 -1.0179 5.7292 10 6 3.4880 -2.2654 5.2914 11 16 3.0870 -2.4066 3.6391 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7067 -0.2500 -2.4545 15 6 2.1955 -0.9403 -3.6507 16 6 1.6859 -0.2188 -4.9000 17 6 2.1958 -0.9400 -6.1492 18 7 1.7084 -0.2489 -7.3453 19 6 2.5009 0.8286 -7.9430 20 6 0.5117 -0.6099 -7.9049 21 1 -0.2361 -1.1080 -7.3057 22 6 0.2600 -0.3356 -9.2421 23 7 1.2439 0.0330 -10.0348 24 14 -1.4751 -0.4898 -9.9166 25 1 -2.3927 -0.9163 -8.8297 26 1 -1.9173 0.8235 -10.4503 27 1 -1.4948 -1.4988 -11.0061 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.2490 -1.6318 1.1526 32 1 2.5970 0.8996 4.9914 33 1 3.4707 -0.7233 6.7507 34 1 3.8550 -3.0759 5.9036 35 1 1.1493 0.5388 -2.5435 36 1 3.2854 -0.9399 -3.6505 37 1 1.8325 -1.9681 -3.6509 38 1 0.5958 -0.2188 -4.9003 39 1 2.0491 0.8089 -4.8996 40 1 3.2858 -0.9404 -6.1490 41 1 1.8321 -1.9676 -6.1494 42 1 3.1159 0.4243 -8.7470 43 1 1.8334 1.5910 -8.3443 44 1 3.1432 1.2720 -7.1821 45 1 1.0679 0.2251 -10.9693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566479234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -43.919023 kcal Electronic energy + Delta-G solvation = -25771.917466 eV Core-core repulsion = 21915.856080 eV Total energy + Delta-G solvation = -3856.061386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56268 -40.38426 -38.46722 -37.96440 -36.36988 -36.05984 -33.88671 -32.63908 -31.41119 -30.25827 -27.94791 -27.16452 -26.33422 -25.07784 -23.55970 -22.42725 -22.11108 -21.32063 -20.42443 -19.84434 -18.71240 -18.07043 -17.66312 -17.05736 -16.87848 -16.64466 -16.60268 -16.23754 -15.78649 -15.69136 -15.16853 -14.95375 -14.75598 -14.56079 -14.44138 -14.05545 -13.71662 -13.67513 -13.42663 -13.32672 -13.18999 -13.03932 -12.81575 -12.71308 -12.61281 -12.49070 -12.27192 -12.05487 -11.94009 -11.82296 -11.46273 -11.34795 -11.08769 -10.63473 -10.45894 -10.15399 -9.88164 -9.56520 -8.76185 -7.81097 -5.30575 -0.52586 0.47044 0.92462 1.36316 1.43060 1.47144 1.48655 1.58735 1.64650 2.08513 2.28427 2.52790 3.32448 3.46655 3.67098 3.71840 3.95057 4.03537 4.13732 4.14953 4.28747 4.34440 4.49096 4.53400 4.57319 4.67715 4.72168 4.81250 4.87705 4.94485 5.00784 5.12658 5.13451 5.20319 5.25389 5.31389 5.35213 5.37459 5.53346 5.65843 5.73130 6.23713 6.34620 6.40845 6.92273 7.05415 7.17165 7.89613 8.33162 9.22230 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029139 B = 0.001646 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.665902 B =17004.851273 C =17193.054242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.120 0.880 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.563 6.563 7 C -0.306 4.306 8 C -0.054 4.054 9 C -0.159 4.159 10 C -0.217 4.217 11 S 0.221 5.779 12 C 0.512 3.488 13 O -0.572 6.572 14 N -0.708 5.708 15 C 0.132 3.868 16 C -0.129 4.129 17 C 0.149 3.851 18 N -0.621 5.621 19 C 0.176 3.824 20 C -0.259 4.259 21 H 0.074 0.926 22 C -0.057 4.057 23 N -0.942 5.942 24 Si 0.968 3.032 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.410 0.590 32 H 0.152 0.848 33 H 0.171 0.829 34 H 0.199 0.801 35 H 0.416 0.584 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.002 0.998 43 H 0.014 0.986 44 H 0.033 0.967 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -3.024 33.038 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.020 3.980 3 H 0.137 0.863 4 N -0.360 5.360 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.426 4.426 8 C -0.088 4.088 9 C -0.190 4.190 10 C -0.355 4.355 11 S 0.488 5.512 12 C 0.298 3.702 13 O -0.451 6.451 14 N -0.359 5.359 15 C 0.008 3.992 16 C -0.170 4.170 17 C 0.023 3.977 18 N -0.344 5.344 19 C 0.031 3.969 20 C -0.389 4.389 21 H 0.092 0.908 22 C -0.252 4.252 23 N -0.589 5.589 24 Si 0.796 3.204 25 H -0.188 1.188 26 H -0.219 1.219 27 H -0.222 1.222 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.247 0.753 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.216 0.784 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.033 0.967 44 H 0.051 0.949 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.814 -4.083 31.892 32.276 hybrid contribution -0.804 1.149 0.016 1.403 sum 2.010 -2.934 31.909 32.106 Atomic orbital electron populations 1.22131 0.90839 1.03720 1.04641 1.20850 0.97065 0.97798 0.82246 0.86250 1.45629 1.67251 1.14700 1.08434 1.17169 0.76566 0.85713 0.82245 1.90804 1.52206 1.16177 1.85248 1.24531 1.18913 1.00473 0.98644 1.21045 0.95586 1.01879 0.90310 1.20290 1.03956 0.92288 1.02428 1.25813 1.06394 1.03009 1.00237 1.83234 1.58108 1.03739 1.06105 1.20735 0.79800 0.84317 0.85385 1.90691 1.39518 1.27852 1.87075 1.45895 1.52945 1.32281 1.04815 1.21234 0.99012 0.96183 0.82798 1.22173 1.01369 1.00068 0.93364 1.20783 0.96826 0.94684 0.85417 1.44160 1.21995 1.38526 1.29724 1.20535 0.93144 0.89396 0.93860 1.19575 0.92475 1.34448 0.92379 0.90843 1.25814 1.00966 1.02045 0.96360 1.70245 1.31242 1.52785 1.04614 0.85193 0.80353 0.76734 0.78105 1.18795 1.21946 1.22170 0.91044 0.88652 0.91442 0.75267 0.83001 0.81163 0.78381 0.74682 0.91739 0.91774 0.91920 0.91663 0.93337 0.93673 0.97962 0.96723 0.94881 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.38 71.98 0.68 -1.66 16 2 C 0.13 2.44 2.98 44.24 0.13 2.57 16 3 H 0.12 2.26 7.58 -2.39 -0.02 2.24 16 4 N -0.71 -14.40 4.95 -450.18 -2.23 -16.63 16 5 C 0.59 13.44 7.75 86.42 0.67 14.11 16 6 O -0.56 -15.77 16.50 -4.33 -0.07 -15.84 16 7 C -0.31 -5.57 6.45 24.08 0.16 -5.42 16 8 C -0.05 -0.83 10.01 21.72 0.22 -0.61 16 9 C -0.16 -1.64 10.15 21.09 0.21 -1.42 16 10 C -0.22 -1.93 10.92 66.82 0.73 -1.20 16 11 S 0.22 2.78 22.16 -56.49 -1.25 1.53 16 12 C 0.51 11.56 7.22 87.66 0.63 12.20 16 13 O -0.57 -16.69 15.84 -3.04 -0.05 -16.74 16 14 N -0.71 -14.43 5.45 -463.07 -2.52 -16.95 16 15 C 0.13 3.26 5.67 86.38 0.49 3.75 16 16 C -0.13 -3.76 5.65 30.59 0.17 -3.59 16 17 C 0.15 5.63 5.64 86.38 0.49 6.12 16 18 N -0.62 -30.24 2.92 -726.95 -2.12 -32.37 16 19 C 0.18 8.56 8.98 127.77 1.15 9.71 16 20 C -0.26 -13.85 9.65 84.03 0.81 -13.04 16 21 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 22 C -0.06 -3.18 5.10 84.86 0.43 -2.75 16 23 N -0.94 -55.81 10.71 21.65 0.23 -55.58 16 24 Si 0.97 44.55 29.57 68.60 2.03 46.58 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.08 7.56 -2.39 -0.02 1.06 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.41 8.01 6.90 -92.70 -0.64 7.37 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 35 H 0.42 6.45 7.89 -92.71 -0.73 5.71 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.72 8.07 -2.38 -0.02 1.70 16 41 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 42 H 0.00 0.11 7.34 -2.39 -0.02 0.09 16 43 H 0.01 0.75 7.34 -2.39 -0.02 0.73 16 44 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -72.29 392.94 0.62 -71.67 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.36 Total: 15.56 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.97 Total: 18.77 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -6.64 Total: -121.53 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.12 Total: -32.59 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.25 Total: 1.53 kcal Total: -72.29 0.62 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566479234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.753 kcal (2) G-P(sol) polarization free energy of solvation -72.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds