Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 N 1.46501 * 109.47162 * 240.00310 * 2 1 3 5 5 C 1.34781 * 120.00103 * 84.99873 * 4 2 1 6 6 O 1.21701 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.46578 * 120.00006 * 180.02562 * 5 4 2 8 8 C 1.36650 * 125.45767 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.29715 * 179.97438 * 8 7 5 10 10 C 1.33820 * 115.10002 * 359.97438 * 9 8 7 11 11 S 1.70617 * 110.95261 * 359.76373 * 10 9 8 12 12 C 1.50695 * 109.46943 * 120.00366 * 2 1 3 13 13 O 1.21277 * 120.00191 * 120.00295 * 12 2 1 14 14 N 1.34774 * 120.00242 * 299.99711 * 12 2 1 15 15 C 1.46499 * 120.00249 * 180.27938 * 14 12 2 16 16 C 1.53004 * 109.46945 * 179.72595 * 15 14 12 17 17 C 1.53008 * 109.46835 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.46803 * 180.02562 * 17 16 15 19 19 C 1.46503 * 120.00208 * 90.00488 * 18 17 16 20 20 C 1.36942 * 120.00237 * 269.99824 * 18 17 16 21 21 H 1.08006 * 119.99858 * 23.05306 * 20 18 17 22 22 C 1.38809 * 120.00376 * 203.05096 * 20 18 17 23 23 N 1.31611 * 119.99973 * 12.92861 * 22 20 18 24 24 Si 1.86799 * 120.00029 * 192.93034 * 22 20 18 25 25 H 1.48504 * 109.47339 * 89.99833 * 24 22 20 26 26 H 1.48501 * 109.47284 * 209.99685 * 24 22 20 27 27 H 1.48504 * 109.47147 * 329.99654 * 24 22 20 28 28 H 1.09006 * 109.47069 * 59.99819 * 1 2 3 29 29 H 1.09002 * 109.47000 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47471 * 299.99763 * 1 2 3 31 31 H 0.97003 * 120.00198 * 265.00125 * 4 2 1 32 32 H 1.08001 * 123.35094 * 359.94286 * 8 7 5 33 33 H 1.08002 * 122.44818 * 180.02562 * 9 8 7 34 34 H 1.08000 * 124.51597 * 179.97438 * 10 9 8 35 35 H 0.97009 * 119.99931 * 0.02562 * 14 12 2 36 36 H 1.08996 * 109.46848 * 299.72549 * 15 14 12 37 37 H 1.08993 * 109.47040 * 59.72433 * 15 14 12 38 38 H 1.08996 * 109.47310 * 299.99671 * 16 15 14 39 39 H 1.09000 * 109.47197 * 60.00378 * 16 15 14 40 40 H 1.08996 * 109.47180 * 300.00090 * 17 16 15 41 41 H 1.09000 * 109.46643 * 60.00377 * 17 16 15 42 42 H 1.08999 * 109.46975 * 95.11692 * 19 18 17 43 43 H 1.09000 * 109.46767 * 215.12124 * 19 18 17 44 44 H 1.08995 * 109.46644 * 335.11969 * 19 18 17 45 45 H 0.97002 * 120.00451 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8572 1.1626 -2.4119 7 6 2.6351 -0.7092 -3.5542 8 6 2.8074 -0.1389 -4.7839 9 6 3.2793 -1.0179 -5.7297 10 6 3.4874 -2.2652 -5.2917 11 16 3.1007 -2.4027 -3.6356 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.2001 -0.9372 3.6506 16 6 1.6946 -0.2127 4.8999 17 6 2.2093 -0.9307 6.1491 18 7 1.7248 -0.2374 7.3453 19 6 0.4471 -0.6238 7.9488 20 6 2.4664 0.7717 7.8993 21 1 3.1831 1.3092 7.2959 22 6 2.2969 1.1041 9.2363 23 7 1.6242 0.3017 10.0337 24 14 3.0237 2.6901 9.9039 25 1 2.0325 3.7869 9.7626 26 1 3.3649 2.5131 11.3383 27 1 4.2516 3.0314 9.1415 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.2491 -1.6317 -1.1527 32 1 2.5936 0.8991 -4.9923 33 1 3.4689 -0.7233 -6.7513 34 1 3.8547 -3.0755 -5.9039 35 1 1.1488 0.5384 2.5436 36 1 1.8372 -1.9650 3.6548 37 1 3.2900 -0.9367 3.6463 38 1 2.0575 0.8150 4.8957 39 1 0.6046 -0.2133 4.9042 40 1 1.8461 -1.9584 6.1531 41 1 3.2993 -0.9305 6.1450 42 1 0.6263 -1.3362 8.7541 43 1 -0.0476 0.2609 8.3497 44 1 -0.1881 -1.0835 7.1917 45 1 1.5054 0.5341 10.9680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566479235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -21.323823 kcal Electronic energy + Delta-G solvation = -25770.330134 eV Core-core repulsion = 21915.248549 eV Total energy + Delta-G solvation = -3855.081585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66566 -39.47975 -37.87723 -36.38663 -35.28998 -34.87963 -32.39183 -31.49733 -30.09162 -29.47178 -26.11359 -25.80280 -25.47939 -24.13143 -22.18915 -21.56385 -20.74597 -20.25488 -19.64679 -19.16603 -17.23485 -16.84369 -16.65320 -16.13302 -16.01349 -15.65624 -15.29146 -15.12975 -14.68672 -14.44482 -14.06708 -13.81227 -13.46552 -13.34078 -13.20629 -13.09337 -12.83887 -12.72622 -12.69916 -12.61048 -11.99986 -11.73335 -11.48186 -11.40695 -11.05722 -10.82475 -10.81635 -10.50462 -10.48277 -10.23510 -10.07626 -9.86954 -9.82821 -9.60517 -9.30103 -9.12294 -9.04596 -8.55883 -6.75865 -5.73118 -3.20608 0.06452 1.02472 1.43692 1.95673 2.38485 2.48060 2.82457 3.18423 3.37408 3.43864 3.45121 4.29851 4.45869 4.49093 4.55806 4.69383 4.79585 4.85650 5.02453 5.15036 5.23636 5.38672 5.40028 5.42129 5.50438 5.71434 5.74717 5.77088 5.83623 5.86273 5.92319 6.04815 6.09538 6.37216 6.43988 6.72097 6.72845 6.90395 7.04138 7.33050 7.35974 7.72041 7.74312 7.79728 7.98912 8.39232 9.23031 9.86479 10.35312 11.31615 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.001661 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.392968 B =16856.454444 C =17112.955916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.118 0.882 4 N -0.709 5.709 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.270 4.270 8 C -0.053 4.053 9 C -0.152 4.152 10 C -0.230 4.230 11 S 0.212 5.788 12 C 0.508 3.492 13 O -0.540 6.540 14 N -0.717 5.717 15 C 0.120 3.880 16 C -0.151 4.151 17 C 0.155 3.845 18 N -0.603 5.603 19 C 0.162 3.838 20 C -0.256 4.256 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.908 5.908 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.408 0.592 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.040 0.960 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -5.143 -30.736 31.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.136 0.864 4 N -0.362 5.362 5 C 0.382 3.618 6 O -0.407 6.407 7 C -0.390 4.390 8 C -0.087 4.087 9 C -0.183 4.183 10 C -0.368 4.368 11 S 0.479 5.521 12 C 0.293 3.707 13 O -0.418 6.418 14 N -0.368 5.368 15 C -0.004 4.004 16 C -0.192 4.192 17 C 0.027 3.973 18 N -0.325 5.325 19 C 0.018 3.982 20 C -0.386 4.386 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.205 1.205 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.584 -6.227 -29.540 30.195 hybrid contribution 0.225 1.928 -0.636 2.042 sum -0.359 -4.299 -30.176 30.483 Atomic orbital electron populations 1.22153 0.92407 1.03390 1.03943 1.20824 0.95967 0.98239 0.83308 0.86406 1.45598 1.67527 1.14638 1.08463 1.16894 0.77200 0.86026 0.81656 1.90841 1.50385 1.14821 1.84630 1.24572 1.16523 0.99004 0.98900 1.20822 0.96198 1.01480 0.90209 1.20069 1.04091 0.92460 1.01663 1.25404 1.08217 1.02384 1.00798 1.83270 1.58339 1.05858 1.04619 1.20472 0.80515 0.84843 0.84918 1.90700 1.38038 1.26392 1.86638 1.46079 1.52948 1.32197 1.05594 1.21523 0.99401 0.96430 0.83003 1.22554 1.01177 1.01053 0.94430 1.20590 0.97464 0.93450 0.85786 1.43891 1.20247 1.39985 1.28398 1.20789 0.85018 0.98785 0.93635 1.19191 1.18652 1.08478 0.92260 0.91413 1.25034 1.00141 0.98713 0.95802 1.70066 1.45048 1.35569 1.04577 0.86255 0.78792 0.83376 0.78113 1.21528 1.21736 1.20476 0.90632 0.91573 0.90472 0.75497 0.82779 0.83598 0.81262 0.76217 0.91533 0.91422 0.91447 0.92121 0.94403 0.93267 0.95079 0.94166 0.98426 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.38 37.16 0.35 -0.94 16 2 C 0.12 1.24 2.98 -69.08 -0.21 1.03 16 3 H 0.12 1.18 7.58 -51.93 -0.39 0.79 16 4 N -0.71 -7.32 4.95 -56.27 -0.28 -7.60 16 5 C 0.60 6.71 7.75 -12.90 -0.10 6.61 16 6 O -0.53 -7.32 16.50 5.19 0.09 -7.23 16 7 C -0.27 -2.51 6.45 -36.79 -0.24 -2.75 16 8 C -0.05 -0.44 10.01 -40.43 -0.40 -0.84 16 9 C -0.15 -0.94 10.15 -41.41 -0.42 -1.36 16 10 C -0.23 -1.32 10.92 29.18 0.32 -1.00 16 11 S 0.21 1.47 22.16 -107.50 -2.38 -0.91 16 12 C 0.51 6.07 7.22 -10.99 -0.08 5.99 16 13 O -0.54 -8.13 15.84 5.56 0.09 -8.04 16 14 N -0.72 -8.01 5.45 -60.30 -0.33 -8.34 16 15 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 16 C -0.15 -2.35 5.65 -26.73 -0.15 -2.50 16 17 C 0.16 3.03 5.64 -4.04 -0.02 3.01 16 18 N -0.60 -14.85 2.92 -181.12 -0.53 -15.38 16 19 C 0.16 3.94 8.98 59.85 0.54 4.48 16 20 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 21 H 0.07 1.79 7.86 -52.48 -0.41 1.38 16 22 C 0.00 0.04 5.10 -17.44 -0.09 -0.05 16 23 N -0.91 -26.43 10.71 55.49 0.59 -25.83 16 24 Si 0.90 21.73 29.57 -169.99 -5.03 16.71 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.50 7.56 -51.93 -0.39 0.11 16 31 H 0.41 4.03 6.90 -40.82 -0.28 3.74 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.40 3.61 7.89 -40.82 -0.32 3.29 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 42 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 43 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 44 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 392.94 15.07 5.92 5.92 Total: -1.00 -33.44 392.94 -9.29 -42.73 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.76 Total: 1.81 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.67 Total: 6.16 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.54 Total: -57.15 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.17 Total: -15.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.38 Total: -0.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.44 -9.29 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566479235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.409 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds