Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99614 * 2 1 4 4 O 1.21285 * 119.99948 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00214 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.47545 * 180.02562 * 5 3 2 7 7 C 1.76188 * 100.00383 * 180.02562 * 6 5 3 8 8 H 1.08004 * 120.00257 * 359.97438 * 7 6 5 9 9 C 1.38804 * 120.00284 * 180.02562 * 7 6 5 10 10 N 1.31626 * 119.99887 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47176 * 59.99574 * 11 9 7 13 13 H 1.48499 * 109.46694 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46907 * 299.99792 * 11 9 7 15 15 C 1.46494 * 120.00297 * 179.97438 * 2 1 3 16 16 C 1.53119 * 109.52268 * 299.99851 * 15 2 1 17 17 C 1.53040 * 109.27917 * 177.55613 * 16 15 2 18 18 N 1.46842 * 109.52651 * 300.82804 * 17 16 15 19 19 C 1.46899 * 111.00041 * 185.83838 * 18 17 16 20 20 C 1.50703 * 109.47107 * 169.99728 * 19 18 17 21 21 C 1.41374 * 126.80043 * 94.70935 * 20 19 18 22 22 C 1.35456 * 103.98370 * 179.88628 * 21 20 19 23 23 O 1.34037 * 106.44500 * 0.37183 * 22 21 20 24 24 N 1.20921 * 111.56830 * 359.74291 * 23 22 21 25 25 C 1.46843 * 111.20263 * 61.73690 * 18 17 16 26 26 C 1.53043 * 109.52446 * 298.26417 * 25 18 17 27 27 H 1.09001 * 109.47018 * 270.00277 * 1 2 3 28 28 H 1.08996 * 109.47163 * 30.00443 * 1 2 3 29 29 H 1.08998 * 109.46501 * 150.00090 * 1 2 3 30 30 H 1.09003 * 109.47607 * 300.00634 * 5 3 2 31 31 H 1.09001 * 109.47232 * 60.00227 * 5 3 2 32 32 H 0.97002 * 120.00401 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.57590 * 179.84541 * 15 2 1 34 34 H 1.09002 * 109.50021 * 57.62341 * 16 15 2 35 35 H 1.09003 * 109.53874 * 297.51987 * 16 15 2 36 36 H 1.08998 * 109.46221 * 180.80268 * 17 16 15 37 37 H 1.09002 * 109.44829 * 60.83620 * 17 16 15 38 38 H 1.09002 * 109.47043 * 289.99708 * 19 18 17 39 39 H 1.09001 * 109.47354 * 49.99769 * 19 18 17 40 40 H 1.07997 * 128.01406 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.77605 * 180.13487 * 22 21 20 42 42 H 1.09004 * 109.46019 * 58.27642 * 25 18 17 43 43 H 1.08999 * 109.46883 * 178.24462 * 25 18 17 44 44 H 1.09007 * 109.49669 * 299.23395 * 26 25 18 45 45 H 1.09001 * 109.53519 * 179.13897 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8482 -0.0012 7 6 1.4413 5.2082 -0.0010 8 1 0.3760 5.0305 -0.0011 9 6 1.9280 6.5081 -0.0019 10 7 3.2263 6.7248 -0.0024 11 14 0.7404 7.9501 -0.0010 12 1 -0.1134 7.8874 1.2123 13 1 1.5065 9.2222 -0.0016 14 1 -0.1159 7.8867 -1.2126 15 6 2.1976 -1.2686 0.0006 16 6 1.8286 -2.0720 1.2508 17 6 2.5496 -3.4214 1.2153 18 7 2.1571 -4.1560 0.0060 19 6 2.7220 -5.5121 0.0071 20 6 2.1069 -6.3134 -1.1112 21 6 2.6328 -6.4962 -2.4107 22 6 1.7201 -7.2864 -3.0250 23 8 0.7518 -7.5164 -2.1272 24 7 0.9834 -6.9698 -1.0738 25 6 2.5439 -3.4259 -1.2079 26 6 1.8226 -2.0766 -1.2449 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 0.7589 2.5299 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 3.5664 7.6332 -0.0027 33 1 3.2696 -1.0714 -0.0023 34 1 0.7511 -2.2357 1.2732 35 1 2.1316 -1.5207 2.1409 36 1 2.2779 -4.0017 2.0971 37 1 3.6272 -3.2570 1.2067 38 1 3.8011 -5.4563 -0.1367 39 1 2.5070 -5.9945 0.9606 40 1 3.5509 -6.0997 -2.8185 41 1 1.7622 -7.6548 -4.0394 42 1 3.6215 -3.2617 -1.2051 43 1 2.2679 -4.0093 -2.0863 44 1 0.7451 -2.2404 -1.2617 45 1 2.1213 -1.5280 -2.1381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566605159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = 37.523927 kcal Electronic energy + Delta-G solvation = -26671.703898 eV Core-core repulsion = 22819.174143 eV Total energy + Delta-G solvation = -3852.529755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.28403 -40.15635 -38.65470 -35.96617 -34.48660 -32.44539 -32.42439 -31.84770 -31.12927 -29.15644 -27.34297 -26.48479 -25.47409 -23.68444 -23.46710 -23.12805 -21.17504 -19.99570 -19.12858 -18.12251 -17.92468 -17.64012 -16.78096 -16.44073 -15.88669 -15.44967 -15.33041 -14.95098 -14.80184 -14.71883 -14.12942 -13.88199 -13.72680 -13.52261 -13.17875 -13.11993 -12.89785 -12.66901 -12.60143 -12.26311 -12.17109 -11.91913 -11.57297 -11.54922 -11.41739 -11.04330 -11.03840 -10.84325 -10.78170 -10.65347 -10.48989 -10.00307 -9.80566 -9.33030 -9.05583 -8.72806 -8.48149 -8.22552 -6.49798 -6.21147 -3.91749 1.15278 1.80648 2.90844 2.93558 3.05922 3.23643 3.26032 3.29312 3.53916 3.61678 3.77554 4.19313 4.20905 4.51700 4.62274 4.71575 4.77085 4.83918 4.91047 4.99303 5.04440 5.09235 5.13783 5.17363 5.20358 5.28640 5.29691 5.39754 5.46456 5.47540 5.55570 5.60252 5.60724 5.70197 5.76552 5.85290 5.90519 6.01403 6.14833 6.17785 6.59723 6.70095 6.71945 7.56613 7.59890 7.93342 8.35358 8.57277 9.23935 10.86200 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031695 B = 0.001899 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.210754 B =14741.777013 C =14874.966217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.619 5.619 3 C 0.534 3.466 4 O -0.519 6.519 5 C -0.149 4.149 6 S -0.062 6.062 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.141 3.859 16 C -0.124 4.124 17 C 0.061 3.939 18 N -0.533 5.533 19 C 0.132 3.868 20 C 0.024 3.976 21 C -0.233 4.233 22 C -0.060 4.060 23 O 0.099 5.901 24 N -0.347 5.347 25 C 0.058 3.942 26 C -0.124 4.124 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.170 0.830 41 H 0.216 0.784 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -28.839 -3.781 29.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.322 3.678 4 O -0.393 6.393 5 C -0.300 4.300 6 S 0.164 5.836 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.037 3.963 16 C -0.162 4.162 17 C -0.067 4.067 18 N -0.259 5.259 19 C 0.004 3.996 20 C -0.136 4.136 21 C -0.254 4.254 22 C -0.141 4.141 23 O 0.032 5.968 24 N -0.050 5.050 25 C -0.070 4.070 26 C -0.163 4.163 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.187 0.813 41 H 0.232 0.768 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.212 -28.908 -2.818 29.222 hybrid contribution -0.673 1.246 -0.636 1.553 sum -3.885 -27.662 -3.454 28.146 Atomic orbital electron populations 1.21747 0.79864 1.03095 1.01763 1.47876 1.06766 1.05289 1.75445 1.20363 0.87928 0.84610 0.74896 1.90678 1.13787 1.86759 1.48118 1.23553 1.04512 0.97202 1.04716 1.85375 1.08129 0.93355 1.96709 1.22818 0.94279 0.92222 1.59020 0.91003 1.24992 0.95678 0.98367 0.94551 1.70007 1.11747 1.21741 1.46804 0.86227 0.80192 0.80295 0.78805 1.19936 1.20815 1.19937 1.21027 0.98370 0.82775 0.94160 1.21933 1.01665 0.94295 0.98340 1.22056 0.97968 0.94534 0.92123 1.61882 1.59984 1.01179 1.02882 1.20290 0.95928 0.88115 0.95274 1.23433 0.92935 1.00515 0.96690 1.22791 1.03811 1.04571 0.94269 1.26027 0.89247 1.00788 0.98087 1.84873 1.40960 1.54870 1.16136 1.73873 1.17085 1.10720 1.03348 1.22106 0.97811 0.94459 0.92665 1.21938 1.01573 0.94409 0.98382 0.92774 0.90720 0.91199 0.89272 0.89274 0.92145 0.88311 0.90683 0.90724 0.90166 0.94143 0.92240 0.88874 0.81253 0.76768 0.94240 0.90470 0.90762 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 9.26 59.85 0.55 1.42 16 2 N -0.62 -8.85 2.77 -173.80 -0.48 -9.33 16 3 C 0.53 10.24 7.69 -10.99 -0.08 10.15 16 4 O -0.52 -11.88 15.19 5.55 0.08 -11.79 16 5 C -0.15 -3.07 4.71 36.00 0.17 -2.90 16 6 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 11 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.14 1.74 2.59 -67.81 -0.18 1.57 16 16 C -0.12 -1.28 5.41 -26.65 -0.14 -1.42 16 17 C 0.06 0.54 5.46 -3.84 -0.02 0.52 16 18 N -0.53 -4.82 4.65 -236.11 -1.10 -5.92 16 19 C 0.13 1.03 5.56 -4.98 -0.03 1.01 16 20 C 0.02 0.21 6.01 -82.10 -0.49 -0.29 16 21 C -0.23 -1.45 10.01 -39.38 -0.39 -1.85 16 22 C -0.06 -0.31 12.30 29.74 0.37 0.05 16 23 O 0.10 0.84 11.20 17.18 0.19 1.04 16 24 N -0.35 -3.61 12.07 33.42 0.40 -3.21 16 25 C 0.06 0.52 5.30 -3.83 -0.02 0.50 16 26 C -0.12 -1.31 5.40 -26.65 -0.14 -1.45 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 29 H 0.07 0.64 6.37 -51.93 -0.33 0.31 16 30 H 0.09 1.70 7.40 -51.91 -0.38 1.31 16 31 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.10 1.46 6.91 -51.93 -0.36 1.11 16 34 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.09 0.70 7.99 -51.93 -0.41 0.28 16 40 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.22 0.19 8.06 -52.49 -0.42 -0.23 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.67 6.24 -51.93 -0.32 0.35 16 44 H 0.07 0.77 6.57 -51.92 -0.34 0.43 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -35.68 377.94 -8.57 -44.25 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.65 Total: -2.06 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.22 Total: -5.68 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.44 Total: -43.95 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.28 Total: -10.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.68 -8.57 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566605159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.774 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds