Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99614 * 2 1 4 4 O 1.21285 * 119.99948 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00214 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.47545 * 180.02562 * 5 3 2 7 7 C 1.76188 * 100.00383 * 180.02562 * 6 5 3 8 8 H 1.08004 * 120.00257 * 359.97438 * 7 6 5 9 9 C 1.38804 * 120.00284 * 180.02562 * 7 6 5 10 10 N 1.31626 * 119.99887 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00108 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47176 * 59.99574 * 11 9 7 13 13 H 1.48499 * 109.46694 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46907 * 299.99792 * 11 9 7 15 15 C 1.46494 * 120.00297 * 179.97438 * 2 1 3 16 16 C 1.53119 * 109.52268 * 299.99851 * 15 2 1 17 17 C 1.53040 * 109.27917 * 177.55613 * 16 15 2 18 18 N 1.46842 * 109.52651 * 300.82804 * 17 16 15 19 19 C 1.46899 * 111.00041 * 185.83838 * 18 17 16 20 20 C 1.50703 * 109.47107 * 169.99728 * 19 18 17 21 21 C 1.41374 * 126.80043 * 94.70935 * 20 19 18 22 22 C 1.35456 * 103.98370 * 179.88628 * 21 20 19 23 23 O 1.34037 * 106.44500 * 0.37183 * 22 21 20 24 24 N 1.20921 * 111.56830 * 359.74291 * 23 22 21 25 25 C 1.46843 * 111.20263 * 61.73690 * 18 17 16 26 26 C 1.53043 * 109.52446 * 298.26417 * 25 18 17 27 27 H 1.09001 * 109.47018 * 270.00277 * 1 2 3 28 28 H 1.08996 * 109.47163 * 30.00443 * 1 2 3 29 29 H 1.08998 * 109.46501 * 150.00090 * 1 2 3 30 30 H 1.09003 * 109.47607 * 300.00634 * 5 3 2 31 31 H 1.09001 * 109.47232 * 60.00227 * 5 3 2 32 32 H 0.97002 * 120.00401 * 180.02562 * 10 9 7 33 33 H 1.09007 * 109.57590 * 179.84541 * 15 2 1 34 34 H 1.09002 * 109.50021 * 57.62341 * 16 15 2 35 35 H 1.09003 * 109.53874 * 297.51987 * 16 15 2 36 36 H 1.08998 * 109.46221 * 180.80268 * 17 16 15 37 37 H 1.09002 * 109.44829 * 60.83620 * 17 16 15 38 38 H 1.09002 * 109.47043 * 289.99708 * 19 18 17 39 39 H 1.09001 * 109.47354 * 49.99769 * 19 18 17 40 40 H 1.07997 * 128.01406 * 0.02562 * 21 20 19 41 41 H 1.07999 * 126.77605 * 180.13487 * 22 21 20 42 42 H 1.09004 * 109.46019 * 58.27642 * 25 18 17 43 43 H 1.08999 * 109.46883 * 178.24462 * 25 18 17 44 44 H 1.09007 * 109.49669 * 299.23395 * 26 25 18 45 45 H 1.09001 * 109.53519 * 179.13897 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8482 -0.0012 7 6 1.4413 5.2082 -0.0010 8 1 0.3760 5.0305 -0.0011 9 6 1.9280 6.5081 -0.0019 10 7 3.2263 6.7248 -0.0024 11 14 0.7404 7.9501 -0.0010 12 1 -0.1134 7.8874 1.2123 13 1 1.5065 9.2222 -0.0016 14 1 -0.1159 7.8867 -1.2126 15 6 2.1976 -1.2686 0.0006 16 6 1.8286 -2.0720 1.2508 17 6 2.5496 -3.4214 1.2153 18 7 2.1571 -4.1560 0.0060 19 6 2.7220 -5.5121 0.0071 20 6 2.1069 -6.3134 -1.1112 21 6 2.6328 -6.4962 -2.4107 22 6 1.7201 -7.2864 -3.0250 23 8 0.7518 -7.5164 -2.1272 24 7 0.9834 -6.9698 -1.0738 25 6 2.5439 -3.4259 -1.2079 26 6 1.8226 -2.0766 -1.2449 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3632 -0.8900 -0.5138 30 1 0.7589 2.5299 -0.8908 31 1 0.7583 2.5303 0.8892 32 1 3.5664 7.6332 -0.0027 33 1 3.2696 -1.0714 -0.0023 34 1 0.7511 -2.2357 1.2732 35 1 2.1316 -1.5207 2.1409 36 1 2.2779 -4.0017 2.0971 37 1 3.6272 -3.2570 1.2067 38 1 3.8011 -5.4563 -0.1367 39 1 2.5070 -5.9945 0.9606 40 1 3.5509 -6.0997 -2.8185 41 1 1.7622 -7.6548 -4.0394 42 1 3.6215 -3.2617 -1.2051 43 1 2.2679 -4.0093 -2.0863 44 1 0.7451 -2.2404 -1.2617 45 1 2.1213 -1.5280 -2.1381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566605159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = 13.001273 kcal Electronic energy + Delta-G solvation = -26672.767280 eV Core-core repulsion = 22819.174143 eV Total energy + Delta-G solvation = -3853.593137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.84064 -41.30266 -39.71417 -37.04970 -35.27598 -34.58983 -33.27812 -32.47525 -31.91656 -30.57935 -28.25959 -27.71682 -27.35491 -24.43793 -24.21586 -23.84801 -21.76912 -21.04125 -20.34078 -19.56004 -18.63995 -18.52298 -18.15477 -17.46143 -16.88457 -16.83087 -16.53977 -16.34415 -15.91275 -15.64902 -15.34962 -14.81409 -14.65913 -14.57186 -14.30688 -14.25852 -14.07325 -13.68089 -13.55662 -13.35016 -13.20767 -13.14442 -12.88061 -12.85403 -12.65890 -12.39848 -12.22457 -12.15130 -11.77912 -11.68960 -11.55257 -11.13307 -11.07872 -10.86559 -10.50266 -10.28223 -9.67307 -9.41449 -8.68204 -8.34867 -6.13464 0.68321 1.24715 1.28208 1.43670 1.45134 1.54984 1.55505 2.08659 2.27269 2.51613 2.88753 2.98986 3.23504 3.25382 3.58592 3.71153 3.80557 3.84869 3.97032 4.12410 4.17840 4.24764 4.27470 4.31887 4.40026 4.43488 4.46068 4.48699 4.60363 4.63061 4.65421 4.70562 4.81944 4.84280 4.88561 4.93668 4.97402 5.12565 5.17834 5.25501 5.40901 5.57533 5.93445 5.98699 6.19017 6.27394 7.06002 7.12813 7.42167 8.74095 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031695 B = 0.001899 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.210754 B =14741.777013 C =14874.966217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.605 5.605 3 C 0.532 3.468 4 O -0.567 6.567 5 C -0.123 4.123 6 S -0.152 6.152 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.013 3.987 10 N -0.911 5.911 11 Si 0.999 3.001 12 H -0.262 1.262 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.138 3.862 16 C -0.115 4.115 17 C 0.065 3.935 18 N -0.540 5.540 19 C 0.133 3.867 20 C 0.012 3.988 21 C -0.243 4.243 22 C -0.045 4.045 23 O 0.085 5.915 24 N -0.386 5.386 25 C 0.064 3.936 26 C -0.116 4.116 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.271 0.729 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.189 0.811 41 H 0.257 0.743 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -30.136 -4.464 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C 0.319 3.681 4 O -0.446 6.446 5 C -0.274 4.274 6 S 0.075 5.925 7 C -0.694 4.694 8 H 0.101 0.899 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.820 3.180 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.186 1.186 15 C 0.035 3.965 16 C -0.154 4.154 17 C -0.063 4.063 18 N -0.266 5.266 19 C 0.005 3.995 20 C -0.148 4.148 21 C -0.265 4.265 22 C -0.126 4.126 23 O 0.019 5.981 24 N -0.091 5.091 25 C -0.064 4.064 26 C -0.154 4.154 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.206 0.794 41 H 0.273 0.727 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.394 -30.265 -3.506 30.942 hybrid contribution -0.026 1.476 -0.461 1.546 sum -5.420 -28.790 -3.967 29.563 Atomic orbital electron populations 1.22041 0.77356 1.04491 1.03267 1.47886 1.08280 1.04436 1.73149 1.20159 0.87286 0.85486 0.75134 1.90662 1.15661 1.87420 1.50842 1.23370 1.02701 0.94989 1.06307 1.85559 1.12659 0.97253 1.97032 1.23157 0.94613 0.92637 1.59014 0.89937 1.26143 0.97630 1.01694 0.93720 1.70177 1.14118 1.22529 1.47904 0.85001 0.77599 0.75857 0.79526 1.18654 1.20370 1.18600 1.21167 0.96703 0.82201 0.96438 1.21850 1.02281 0.94643 0.96613 1.22027 0.97679 0.93805 0.92805 1.61861 1.60352 1.01680 1.02662 1.20327 0.96609 0.87204 0.95393 1.23701 0.92872 1.00395 0.97784 1.23091 1.04837 1.05135 0.93455 1.26833 0.87642 0.99258 0.98880 1.84821 1.41969 1.54972 1.16337 1.73871 1.18391 1.12264 1.04612 1.22032 0.97539 0.93656 0.93210 1.21852 1.02096 0.94719 0.96744 0.91159 0.90486 0.88732 0.87454 0.87586 0.91984 0.91152 0.89825 0.91626 0.88688 0.94288 0.90866 0.88778 0.79369 0.72672 0.94328 0.89671 0.90003 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.26 127.77 1.18 2.55 16 2 N -0.60 -16.72 2.77 -822.16 -2.28 -19.00 16 3 C 0.53 20.53 7.69 87.66 0.67 21.20 16 4 O -0.57 -27.01 15.19 -3.04 -0.05 -27.05 16 5 C -0.12 -5.01 4.71 71.23 0.34 -4.67 16 6 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 7 C -0.55 -31.41 9.50 67.96 0.65 -30.77 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 C 0.01 0.74 5.49 84.86 0.47 1.20 16 10 N -0.91 -56.24 13.22 21.65 0.29 -55.96 16 11 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 15 C 0.14 3.35 2.59 45.07 0.12 3.47 16 16 C -0.12 -2.24 5.41 30.65 0.17 -2.07 16 17 C 0.06 1.05 5.46 86.33 0.47 1.52 16 18 N -0.54 -8.86 4.65 -900.93 -4.19 -13.05 16 19 C 0.13 1.88 5.56 85.56 0.48 2.35 16 20 C 0.01 0.19 6.01 43.58 0.26 0.45 16 21 C -0.24 -2.50 10.01 22.40 0.22 -2.28 16 22 C -0.05 -0.36 12.30 67.18 0.83 0.47 16 23 O 0.08 1.33 11.20 71.66 0.80 2.13 16 24 N -0.39 -7.66 12.07 -49.56 -0.60 -8.26 16 25 C 0.06 1.07 5.30 86.33 0.46 1.52 16 26 C -0.12 -2.27 5.40 30.65 0.17 -2.11 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.50 6.44 -2.39 -0.02 1.49 16 29 H 0.09 1.42 6.37 -2.39 -0.02 1.41 16 30 H 0.11 3.97 7.40 -2.39 -0.02 3.95 16 31 H 0.11 3.95 8.11 -2.39 -0.02 3.93 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.07 2.15 6.91 -2.38 -0.02 2.13 16 34 H 0.08 1.50 7.60 -2.39 -0.02 1.48 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.28 8.02 -2.39 -0.02 1.26 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 39 H 0.09 1.30 7.99 -2.39 -0.02 1.28 16 40 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.26 -0.53 8.06 -2.91 -0.02 -0.56 16 42 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.08 1.31 6.24 -2.39 -0.01 1.30 16 44 H 0.08 1.50 6.57 -2.38 -0.02 1.48 16 45 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -80.77 377.94 2.31 -78.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.99 Total: 13.93 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.47 Total: -7.16 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -6.77 Total: -96.26 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: 0.76 Total: -24.93 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -80.77 2.31 -78.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566605159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.457 kcal (2) G-P(sol) polarization free energy of solvation -80.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds