Wall clock time and date at job start Sat Apr 11 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99840 * 2 1 4 4 C 1.52999 * 109.47315 * 66.05035 * 3 2 1 5 5 N 1.46501 * 109.47082 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99536 * 179.97438 * 5 4 3 7 7 O 1.21276 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99432 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46526 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46909 * 180.02562 * 9 8 6 11 11 C 1.38423 * 122.53613 * 270.00211 * 10 9 8 12 12 C 1.33390 * 114.91977 * 180.02562 * 11 10 9 13 13 S 1.75887 * 109.59565 * 359.75483 * 12 11 10 14 14 C 1.33391 * 122.54338 * 90.02238 * 10 9 8 15 15 C 1.46903 * 110.99700 * 236.05310 * 2 1 3 16 16 C 1.50700 * 109.46781 * 293.94867 * 15 2 1 17 17 O 1.21294 * 120.00344 * 0.02562 * 16 15 2 18 18 N 1.34781 * 120.00138 * 180.02562 * 16 15 2 19 19 C 1.37092 * 120.00049 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00060 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00131 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99649 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46855 * 60.00815 * 23 21 19 25 25 H 1.48499 * 109.46963 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47557 * 300.00315 * 23 21 19 27 27 H 1.08996 * 109.47422 * 59.99674 * 1 2 3 28 28 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46604 * 299.99856 * 1 2 3 30 30 H 1.09005 * 109.47347 * 306.04788 * 3 2 1 31 31 H 1.09007 * 109.46953 * 186.05146 * 3 2 1 32 32 H 1.09001 * 109.46674 * 59.99767 * 4 3 2 33 33 H 1.08994 * 109.46989 * 299.99894 * 4 3 2 34 34 H 0.96995 * 120.00320 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.46984 * 60.00404 * 8 6 5 36 36 H 1.08994 * 109.47395 * 299.99944 * 8 6 5 37 37 H 1.08994 * 109.47301 * 60.00425 * 9 8 6 38 38 H 1.09003 * 109.46866 * 299.99861 * 9 8 6 39 39 H 1.08001 * 122.53963 * 0.04211 * 11 10 9 40 40 H 1.07998 * 125.20164 * 180.02562 * 12 11 10 41 41 H 1.08002 * 125.19887 * 359.95301 * 14 10 9 42 42 H 1.08995 * 109.47311 * 53.94798 * 15 2 1 43 43 H 1.08995 * 109.47033 * 173.95365 * 15 2 1 44 44 H 0.96997 * 119.99990 * 359.97438 * 18 16 15 45 45 H 0.97003 * 119.99654 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1570 3.4249 1.3185 6 6 1.9558 4.2240 2.3851 7 8 1.3401 3.8107 3.3447 8 6 2.4969 5.6305 2.3855 9 6 2.1328 6.3165 3.7038 10 6 2.6733 7.7232 3.7041 11 6 3.9358 8.0356 4.1781 12 6 4.2590 9.3278 4.1070 13 16 2.9248 10.2317 3.4024 14 6 1.9714 8.7617 3.2479 15 6 1.9954 -0.7659 -1.1377 16 6 1.6369 -2.2203 -0.9730 17 8 1.0047 -2.5831 -0.0035 18 7 2.0188 -3.1180 -1.9030 19 6 1.6922 -4.4411 -1.7534 20 1 1.1285 -4.7639 -0.8905 21 6 2.0854 -5.3665 -2.7124 22 7 2.7708 -4.9735 -3.7625 23 14 1.6410 -7.1693 -2.5082 24 1 0.1638 -7.3122 -2.4564 25 1 2.1736 -7.9437 -3.6579 26 1 2.2328 -7.6854 -1.2478 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.5610 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0659 1.5014 2.1491 33 1 0.5473 2.0844 1.4266 34 1 2.6491 3.7555 0.5508 35 1 2.0635 6.1867 1.5543 36 1 3.5812 5.6027 2.2781 37 1 2.5664 5.7602 4.5347 38 1 1.0485 6.3442 3.8116 39 1 4.6082 7.2896 4.5752 40 1 5.1981 9.7533 4.4286 41 1 0.9722 8.7075 2.8416 42 1 1.5609 -0.3871 -2.0628 43 1 3.0796 -0.6610 -1.1758 44 1 2.5240 -2.8279 -2.6785 45 1 3.0456 -5.6196 -4.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567285876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:50 Heat of formation + Delta-G solvation = -37.785606 kcal Electronic energy + Delta-G solvation = -25194.667553 eV Core-core repulsion = 21338.872132 eV Total energy + Delta-G solvation = -3855.795421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05585 -38.77108 -38.52276 -36.81085 -34.67112 -33.80986 -33.22672 -31.25891 -30.07438 -29.11805 -27.71170 -26.01441 -25.04697 -23.77118 -22.73306 -21.25032 -20.44342 -19.17703 -19.10719 -18.06618 -17.85748 -17.20635 -16.32669 -16.21644 -15.92474 -15.60525 -15.23657 -14.75217 -14.63923 -14.35861 -13.94184 -13.71146 -13.59213 -13.47456 -13.38880 -13.27454 -13.02674 -12.63910 -12.37480 -12.21164 -12.13485 -11.84748 -11.52519 -11.42763 -11.37345 -11.27989 -11.11488 -11.05250 -10.92871 -10.44005 -10.21734 -10.08069 -9.47295 -9.22182 -9.20676 -8.78490 -8.48763 -7.99494 -7.89794 -6.42081 -3.82819 0.59232 1.25800 1.58053 2.25159 2.45935 2.93323 3.20214 3.25933 3.30545 3.89530 4.04043 4.25532 4.39951 4.48918 4.67339 4.72088 4.78374 4.86904 4.97831 5.11233 5.12161 5.13832 5.22632 5.24597 5.38217 5.39803 5.62452 5.64650 5.68065 5.74522 5.83537 5.88970 5.92076 6.00122 6.02689 6.11006 6.23547 6.27598 6.54990 7.17861 7.28099 7.32480 7.54928 8.03422 8.05785 8.61464 9.17845 9.53777 10.05783 10.75575 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041928 B = 0.001320 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.657443 B =21209.663277 C =21425.410407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.731 5.731 6 C 0.511 3.489 7 O -0.538 6.538 8 C -0.133 4.133 9 C -0.046 4.046 10 C -0.099 4.099 11 C -0.130 4.130 12 C -0.211 4.211 13 S 0.087 5.913 14 C -0.210 4.210 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.015 0.985 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.399 0.601 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 30.399 8.293 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.383 5.383 6 C 0.297 3.703 7 O -0.415 6.415 8 C -0.174 4.174 9 C -0.086 4.086 10 C -0.112 4.112 11 C -0.160 4.160 12 C -0.347 4.347 13 S 0.351 5.649 14 C -0.346 4.346 15 C -0.084 4.084 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.034 0.966 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.510 31.037 9.556 32.572 hybrid contribution 0.475 -1.590 -1.395 2.168 sum 2.985 29.447 8.161 30.703 Atomic orbital electron populations 1.22627 0.86475 1.04763 0.99100 1.61446 1.08959 1.10455 1.43084 1.22256 1.00727 0.89780 0.95680 1.21341 0.99593 0.80757 0.98606 1.45985 1.58066 1.14461 1.19774 1.20663 0.79838 0.87466 0.82326 1.90735 1.40793 1.75835 1.34129 1.21642 1.02966 0.92648 1.00110 1.20054 1.01893 0.89693 0.96951 1.18979 0.94462 0.96406 1.01332 1.20164 0.96840 0.96210 1.02827 1.25623 1.03290 0.97378 1.08372 1.84341 1.08277 1.11357 1.60957 1.25529 1.04543 0.95080 1.09429 1.21865 1.00665 0.94241 0.91630 1.19708 0.85560 0.86601 0.85297 1.90494 1.43852 1.80090 1.31604 1.41850 1.49409 1.07349 1.21428 1.19658 1.32986 0.82303 1.07970 0.87938 1.25251 0.96782 1.00560 0.95274 1.69603 1.37986 1.35866 1.10921 0.85918 0.78906 0.81684 0.77717 1.19921 1.20995 1.19878 0.96638 0.88359 0.91854 0.94604 0.90299 0.90260 0.91192 0.76701 0.88812 0.88662 0.89887 0.90090 0.84071 0.81869 0.81826 0.93361 0.89328 0.77509 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.83 16 2 N -0.52 -8.36 4.50 -244.37 -1.10 -9.46 16 3 C 0.04 0.52 5.07 -3.83 -0.02 0.50 16 4 C 0.12 1.41 5.60 -4.04 -0.02 1.39 16 5 N -0.73 -6.50 5.56 -60.29 -0.33 -6.83 16 6 C 0.51 5.17 7.83 -10.98 -0.09 5.08 16 7 O -0.54 -7.84 15.98 5.56 0.09 -7.75 16 8 C -0.13 -0.86 5.68 -27.88 -0.16 -1.02 16 9 C -0.05 -0.34 4.76 -27.88 -0.13 -0.47 16 10 C -0.10 -0.69 5.06 -106.25 -0.54 -1.23 16 11 C -0.13 -0.85 9.98 -41.21 -0.41 -1.26 16 12 C -0.21 -1.26 11.23 29.04 0.33 -0.93 16 13 S 0.09 0.53 23.34 -107.50 -2.51 -1.98 16 14 C -0.21 -1.38 10.98 29.04 0.32 -1.06 16 15 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 16 C 0.44 10.33 7.48 -10.98 -0.08 10.25 16 17 O -0.58 -15.43 13.91 5.55 0.08 -15.35 16 18 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 19 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 29 H 0.06 0.92 6.47 -51.92 -0.34 0.59 16 30 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.08 0.82 7.93 -51.92 -0.41 0.41 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 34 H 0.40 2.31 8.47 -40.82 -0.35 1.97 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -33.62 391.43 -9.39 -43.02 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.62 Total: 9.35 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.53 Total: 4.94 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.77 Total: -54.08 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.51 Total: -1.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.62 -9.39 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567285876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.231 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds