Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99840 * 2 1 4 4 C 1.52999 * 109.47315 * 66.05035 * 3 2 1 5 5 N 1.46501 * 109.47082 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99536 * 179.97438 * 5 4 3 7 7 O 1.21276 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99432 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46526 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46909 * 180.02562 * 9 8 6 11 11 C 1.38423 * 122.53613 * 270.00211 * 10 9 8 12 12 C 1.33390 * 114.91977 * 180.02562 * 11 10 9 13 13 S 1.75887 * 109.59565 * 359.75483 * 12 11 10 14 14 C 1.33391 * 122.54338 * 90.02238 * 10 9 8 15 15 C 1.46903 * 110.99700 * 236.05310 * 2 1 3 16 16 C 1.50700 * 109.46781 * 293.94867 * 15 2 1 17 17 O 1.21294 * 120.00344 * 0.02562 * 16 15 2 18 18 N 1.34781 * 120.00138 * 180.02562 * 16 15 2 19 19 C 1.37092 * 120.00049 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00060 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00131 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99649 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46855 * 60.00815 * 23 21 19 25 25 H 1.48499 * 109.46963 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47557 * 300.00315 * 23 21 19 27 27 H 1.08996 * 109.47422 * 59.99674 * 1 2 3 28 28 H 1.09000 * 109.47546 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46604 * 299.99856 * 1 2 3 30 30 H 1.09005 * 109.47347 * 306.04788 * 3 2 1 31 31 H 1.09007 * 109.46953 * 186.05146 * 3 2 1 32 32 H 1.09001 * 109.46674 * 59.99767 * 4 3 2 33 33 H 1.08994 * 109.46989 * 299.99894 * 4 3 2 34 34 H 0.96995 * 120.00320 * 0.02562 * 5 4 3 35 35 H 1.08994 * 109.46984 * 60.00404 * 8 6 5 36 36 H 1.08994 * 109.47395 * 299.99944 * 8 6 5 37 37 H 1.08994 * 109.47301 * 60.00425 * 9 8 6 38 38 H 1.09003 * 109.46866 * 299.99861 * 9 8 6 39 39 H 1.08001 * 122.53963 * 0.04211 * 11 10 9 40 40 H 1.07998 * 125.20164 * 180.02562 * 12 11 10 41 41 H 1.08002 * 125.19887 * 359.95301 * 14 10 9 42 42 H 1.08995 * 109.47311 * 53.94798 * 15 2 1 43 43 H 1.08995 * 109.47033 * 173.95365 * 15 2 1 44 44 H 0.96997 * 119.99990 * 359.97438 * 18 16 15 45 45 H 0.97003 * 119.99654 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1570 3.4249 1.3185 6 6 1.9558 4.2240 2.3851 7 8 1.3401 3.8107 3.3447 8 6 2.4969 5.6305 2.3855 9 6 2.1328 6.3165 3.7038 10 6 2.6733 7.7232 3.7041 11 6 3.9358 8.0356 4.1781 12 6 4.2590 9.3278 4.1070 13 16 2.9248 10.2317 3.4024 14 6 1.9714 8.7617 3.2479 15 6 1.9954 -0.7659 -1.1377 16 6 1.6369 -2.2203 -0.9730 17 8 1.0047 -2.5831 -0.0035 18 7 2.0188 -3.1180 -1.9030 19 6 1.6922 -4.4411 -1.7534 20 1 1.1285 -4.7639 -0.8905 21 6 2.0854 -5.3665 -2.7124 22 7 2.7708 -4.9735 -3.7625 23 14 1.6410 -7.1693 -2.5082 24 1 0.1638 -7.3122 -2.4564 25 1 2.1736 -7.9437 -3.6579 26 1 2.2328 -7.6854 -1.2478 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.5610 1.9274 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0659 1.5014 2.1491 33 1 0.5473 2.0844 1.4266 34 1 2.6491 3.7555 0.5508 35 1 2.0635 6.1867 1.5543 36 1 3.5812 5.6027 2.2781 37 1 2.5664 5.7602 4.5347 38 1 1.0485 6.3442 3.8116 39 1 4.6082 7.2896 4.5752 40 1 5.1981 9.7533 4.4286 41 1 0.9722 8.7075 2.8416 42 1 1.5609 -0.3871 -2.0628 43 1 3.0796 -0.6610 -1.1758 44 1 2.5240 -2.8279 -2.6785 45 1 3.0456 -5.6196 -4.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567285876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -62.508882 kcal Electronic energy + Delta-G solvation = -25195.739635 eV Core-core repulsion = 21338.872132 eV Total energy + Delta-G solvation = -3856.867503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88624 -40.33505 -39.16147 -38.15512 -36.00503 -35.46218 -33.82121 -33.26392 -30.94654 -29.87970 -29.04293 -27.13365 -26.36583 -24.98199 -23.33928 -22.30334 -21.30799 -20.93265 -19.84243 -19.58237 -18.57387 -18.03826 -17.60125 -17.28535 -16.98777 -16.56294 -16.45435 -16.08793 -15.93965 -15.68115 -15.25329 -15.01043 -14.74656 -14.45975 -14.10689 -14.05625 -13.81319 -13.76766 -13.44205 -13.22939 -13.03955 -12.94740 -12.83255 -12.74394 -12.56367 -12.54027 -12.40650 -12.14620 -12.07850 -11.93162 -11.60039 -11.44404 -10.94893 -10.27963 -10.08176 -9.98178 -9.68135 -9.25907 -9.23341 -8.44992 -5.93233 0.12940 0.80845 1.12164 1.40569 1.42566 1.53019 1.67443 1.75061 2.07915 2.10932 2.32221 2.93858 3.22155 3.43791 3.75790 3.88540 4.00307 4.07982 4.14115 4.26002 4.26887 4.35791 4.38312 4.47813 4.53949 4.61811 4.64405 4.65530 4.68287 4.74900 4.88294 4.91586 4.97971 5.16043 5.20906 5.21556 5.41822 5.42979 5.54873 5.62097 5.86172 6.05637 6.18000 6.58530 6.63254 7.15285 7.29919 7.58972 8.15557 8.72062 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.041928 B = 0.001320 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.657443 B =21209.663277 C =21425.410407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.716 5.716 6 C 0.508 3.492 7 O -0.589 6.589 8 C -0.121 4.121 9 C -0.042 4.042 10 C -0.105 4.105 11 C -0.143 4.143 12 C -0.213 4.213 13 S 0.089 5.911 14 C -0.219 4.219 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.151 0.849 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 32.175 7.040 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.369 5.369 6 C 0.296 3.704 7 O -0.470 6.470 8 C -0.161 4.161 9 C -0.082 4.082 10 C -0.118 4.118 11 C -0.173 4.173 12 C -0.348 4.348 13 S 0.352 5.648 14 C -0.354 4.354 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.199 1.199 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.168 0.832 40 H 0.199 0.801 41 H 0.192 0.808 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.786 32.856 8.256 34.088 hybrid contribution 0.078 -2.058 -0.947 2.267 sum 3.865 30.798 7.308 31.888 Atomic orbital electron populations 1.22458 0.86940 1.02360 1.00561 1.61334 1.08876 1.13289 1.43036 1.22257 1.01839 0.87294 0.96116 1.21064 0.98618 0.81979 0.97934 1.45813 1.57613 1.13172 1.20313 1.21341 0.78844 0.88664 0.81537 1.90720 1.43163 1.77002 1.36073 1.21626 1.04152 0.89988 1.00302 1.19954 1.01023 0.90121 0.97150 1.18967 0.94846 0.96052 1.01903 1.20329 0.96958 0.96794 1.03222 1.25904 1.03877 0.97218 1.07821 1.84342 1.08368 1.11200 1.60855 1.25729 1.05102 0.95191 1.09406 1.21732 1.02347 0.89872 0.93058 1.20850 0.83735 0.88945 0.83870 1.90476 1.45205 1.81500 1.33098 1.41909 1.50059 1.06958 1.22182 1.19611 1.34457 0.84199 1.08093 0.90469 1.25980 0.96262 1.04135 0.94678 1.69658 1.38022 1.37181 1.11171 0.85026 0.78578 0.76990 0.77966 1.19809 1.19440 1.19879 0.94629 0.92585 0.90927 0.92044 0.88303 0.92896 0.92643 0.74424 0.86512 0.86481 0.91232 0.91347 0.83152 0.80080 0.80836 0.90924 0.86698 0.76941 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 8.96 127.69 1.14 1.93 16 2 N -0.54 -16.74 4.50 -927.05 -4.17 -20.91 16 3 C 0.05 1.07 5.07 86.30 0.44 1.51 16 4 C 0.13 2.85 5.60 86.38 0.48 3.33 16 5 N -0.72 -11.16 5.56 -463.06 -2.57 -13.73 16 6 C 0.51 9.66 7.83 87.66 0.69 10.34 16 7 O -0.59 -17.38 15.98 -3.02 -0.05 -17.43 16 8 C -0.12 -1.30 5.68 29.85 0.17 -1.13 16 9 C -0.04 -0.59 4.76 29.85 0.14 -0.45 16 10 C -0.11 -1.32 5.06 -20.92 -0.11 -1.43 16 11 C -0.14 -1.64 9.98 21.22 0.21 -1.43 16 12 C -0.21 -2.17 11.23 66.72 0.75 -1.42 16 13 S 0.09 0.95 23.34 -56.49 -1.32 -0.36 16 14 C -0.22 -2.57 10.98 66.72 0.73 -1.83 16 15 C 0.06 1.99 5.45 85.56 0.47 2.46 16 16 C 0.44 20.62 7.48 87.66 0.66 21.28 16 17 O -0.62 -34.12 13.91 -3.07 -0.04 -34.16 16 18 N -0.57 -29.07 5.29 -306.98 -1.62 -30.70 16 19 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 23 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 2.27 5.82 -2.39 -0.01 2.26 16 29 H 0.07 2.12 6.47 -2.38 -0.02 2.11 16 30 H 0.06 1.00 8.12 -2.38 -0.02 0.98 16 31 H 0.10 1.66 7.93 -2.38 -0.02 1.64 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.40 6.55 -2.39 -0.02 1.38 16 34 H 0.42 3.33 8.47 -92.71 -0.79 2.55 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 38 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 43 H 0.12 3.18 7.93 -2.39 -0.02 3.16 16 44 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -75.51 391.43 -0.91 -76.42 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.50 Total: 29.82 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 7.05 Total: 14.95 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -8.08 Total: -114.17 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -1.32 Total: -0.36 kcal Total: -75.51 -0.91 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567285876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.915 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds