Wall clock time and date at job start Sat Apr 11 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46843 * 89.99951 * 7 6 5 9 9 C 1.46904 * 110.99894 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47062 * 180.02562 * 9 8 7 11 11 N 1.46494 * 109.47198 * 180.02562 * 10 9 8 12 12 C 1.46502 * 119.99842 * 90.00114 * 11 10 9 13 13 C 1.34775 * 120.00449 * 270.00380 * 11 10 9 14 14 O 1.21280 * 119.99674 * 359.97438 * 13 11 10 15 15 C 1.50700 * 120.00326 * 180.02562 * 13 11 10 16 16 S 1.81002 * 109.47226 * 179.97438 * 15 13 11 17 17 C 1.76198 * 100.00136 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99981 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00282 * 179.97438 * 17 16 15 20 20 N 1.31637 * 119.99686 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00346 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46828 * 60.00121 * 21 19 17 23 23 H 1.48501 * 109.47195 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47352 * 300.00308 * 21 19 17 25 25 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 26 26 N 1.31967 * 120.83264 * 0.02562 * 25 6 5 27 27 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 28 28 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 30 30 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 31 31 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 33 33 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 34 34 H 1.00896 * 111.00593 * 303.95703 * 8 7 6 35 35 H 1.08997 * 109.47179 * 300.00221 * 9 8 7 36 36 H 1.09001 * 109.46761 * 60.00391 * 9 8 7 37 37 H 1.09000 * 109.47043 * 300.00596 * 10 9 8 38 38 H 1.09005 * 109.46808 * 60.00077 * 10 9 8 39 39 H 1.09005 * 109.47337 * 90.00142 * 12 11 10 40 40 H 1.08999 * 109.47436 * 210.00239 * 12 11 10 41 41 H 1.09001 * 109.47044 * 330.00005 * 12 11 10 42 42 H 1.09001 * 109.46860 * 300.00025 * 15 13 11 43 43 H 1.08998 * 109.47242 * 59.99713 * 15 13 11 44 44 H 0.96994 * 119.99748 * 180.02562 * 20 19 17 45 45 H 1.07994 * 119.58392 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0799 5.4653 -1.3834 9 6 4.6897 6.8013 -1.4226 10 6 4.8844 7.2304 -2.8782 11 7 5.4930 8.5624 -2.9174 12 6 6.9513 8.7010 -2.9381 13 6 4.7115 9.6603 -2.9343 14 8 3.5043 9.5455 -2.9176 15 6 5.3376 11.0304 -2.9752 16 16 4.0362 12.2883 -2.9903 17 6 5.0220 13.7480 -3.0369 18 1 6.0993 13.6720 -3.0471 19 6 4.4142 14.9955 -3.0604 20 7 3.1011 15.0882 -3.0474 21 14 5.4593 16.5430 -3.1090 22 1 6.3032 16.5321 -4.3308 23 1 4.5759 17.7366 -3.1276 24 1 6.3295 16.5906 -1.9068 25 6 1.8772 3.5097 0.0021 26 7 1.3187 2.3141 0.0026 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0229 0.3694 -0.0035 31 1 5.1255 2.5946 0.0011 32 1 3.2187 5.7201 0.5158 33 1 4.8376 4.9803 0.5150 34 1 4.6342 4.7992 -1.9001 35 1 4.0367 7.5136 -0.9184 36 1 5.6560 6.7745 -0.9189 37 1 5.5371 6.5181 -3.3828 38 1 3.9179 7.2573 -3.3815 39 1 7.3008 8.7108 -3.9705 40 1 7.2347 9.6334 -2.4497 41 1 7.4036 7.8620 -2.4093 42 1 5.9669 11.1687 -2.0959 43 1 5.9450 11.1257 -3.8752 44 1 2.6763 15.9600 -3.0642 45 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567466711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:55 Heat of formation + Delta-G solvation = -29.668886 kcal Electronic energy + Delta-G solvation = -25253.825153 eV Core-core repulsion = 21398.381699 eV Total energy + Delta-G solvation = -3855.443454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98927 -39.51884 -38.50511 -36.69968 -35.14935 -32.95807 -32.42820 -31.94106 -30.09165 -28.31775 -27.58989 -26.41436 -25.50992 -24.80664 -23.81915 -22.43627 -22.01949 -19.18300 -18.76363 -17.68344 -17.49213 -16.67771 -16.55282 -16.36445 -16.05257 -15.28012 -15.26698 -14.87050 -14.80774 -14.67452 -14.53972 -13.89798 -13.86204 -13.48108 -13.42381 -13.28378 -13.07910 -12.83974 -12.55228 -12.31313 -12.30367 -12.16422 -11.82020 -11.66663 -11.49529 -11.17651 -11.04389 -11.04097 -10.76435 -10.27967 -9.97570 -9.81676 -9.37603 -9.05924 -8.87161 -8.71529 -8.52191 -8.22896 -6.50126 -6.21367 -3.92200 0.78863 0.87550 2.73223 2.88186 3.04679 3.23188 3.24282 3.28653 3.37497 3.58833 3.97447 4.13846 4.20432 4.42290 4.52127 4.61014 4.73914 4.78638 4.92951 4.95697 4.96864 5.06826 5.08700 5.13367 5.13652 5.25090 5.31892 5.33159 5.39484 5.45164 5.55954 5.57311 5.66100 5.82950 5.88894 5.89875 5.97464 6.06007 6.12577 6.53472 6.71467 6.86009 7.05383 7.50796 7.51152 7.59178 8.34872 8.55571 9.23643 10.85978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.001582 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.374637 B =17692.170762 C =18364.665601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.317 3.683 4 C -0.192 4.192 5 C -0.035 4.035 6 C -0.171 4.171 7 C 0.110 3.890 8 N -0.681 5.681 9 C 0.045 3.955 10 C 0.121 3.879 11 N -0.626 5.626 12 C 0.081 3.919 13 C 0.532 3.468 14 O -0.510 6.510 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.165 3.835 26 N -0.540 5.540 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.339 0.661 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -28.760 6.317 29.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.138 3.862 4 C -0.212 4.212 5 C -0.061 4.061 6 C -0.174 4.174 7 C -0.020 4.020 8 N -0.312 5.312 9 C -0.085 4.085 10 C -0.003 4.003 11 N -0.362 5.362 12 C -0.063 4.063 13 C 0.319 3.681 14 O -0.384 6.384 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C 0.009 3.991 26 N -0.263 5.263 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.845 -28.909 6.271 29.638 hybrid contribution 3.772 1.048 0.217 3.921 sum 5.617 -27.861 6.488 29.152 Atomic orbital electron populations 1.22870 0.77059 1.02937 1.02653 1.86226 1.23084 1.24668 1.87797 1.19898 0.89459 0.84801 0.92010 1.21017 0.92028 0.99448 1.08719 1.21314 1.00318 0.90907 0.93607 1.20621 0.94995 0.95758 1.06048 1.20697 0.99177 0.92028 0.90078 1.60372 1.54272 1.03757 1.12833 1.22368 0.97538 0.90575 0.98060 1.21245 1.00270 0.83062 0.95724 1.47826 1.06770 1.05723 1.75911 1.21764 0.79858 1.02877 1.01758 1.20370 0.87026 0.85508 0.75146 1.90711 1.14021 1.86321 1.47335 1.23562 1.05719 0.96149 1.04675 1.85410 1.06358 0.95010 1.96638 1.22818 0.94626 0.91944 1.59068 0.91015 1.24986 0.95271 0.98740 0.94531 1.70010 1.08301 1.25213 1.46715 0.86230 0.79639 0.80881 0.78781 1.19941 1.20803 1.19963 1.22378 0.92316 0.93507 0.90938 1.67386 1.40872 0.98812 1.19223 0.92148 0.88645 0.92231 0.84183 0.84375 0.89522 0.94121 0.84346 0.89967 0.95178 0.91177 0.88832 0.92658 0.90616 0.91639 0.89302 0.89280 0.92124 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -2.94 10.48 -18.72 -0.20 -3.14 16 3 C 0.32 3.16 7.49 -17.12 -0.13 3.03 16 4 C -0.19 -1.52 10.04 -39.27 -0.39 -1.92 16 5 C -0.04 -0.25 9.85 -39.31 -0.39 -0.63 16 6 C -0.17 -1.38 5.41 -104.47 -0.57 -1.95 16 7 C 0.11 0.85 5.83 -4.98 -0.03 0.82 16 8 N -0.68 -6.05 6.49 -115.06 -0.75 -6.80 16 9 C 0.04 0.46 6.01 -3.82 -0.02 0.44 16 10 C 0.12 1.39 5.67 -4.05 -0.02 1.37 16 11 N -0.63 -8.49 2.87 -181.57 -0.52 -9.01 16 12 C 0.08 0.79 10.24 59.85 0.61 1.40 16 13 C 0.53 9.97 7.69 -10.99 -0.08 9.88 16 14 O -0.51 -11.57 15.44 5.56 0.09 -11.49 16 15 C -0.15 -3.03 4.71 36.01 0.17 -2.86 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.16 1.55 10.85 -17.56 -0.19 1.36 16 26 N -0.54 -5.72 9.22 -13.33 -0.12 -5.84 16 27 H 0.06 0.44 8.11 -51.93 -0.42 0.01 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 32 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.34 2.49 8.72 -39.29 -0.34 2.15 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 41 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 43 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -35.55 397.82 -8.70 -44.25 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.89 Total: -0.38 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 0.20 Total: -0.62 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.66 Total: -47.02 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.11 Total: -14.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.55 -8.70 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.578 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds