Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46896 * 86.45795 * 3 2 1 5 5 C 1.34780 * 119.99566 * 180.02562 * 4 3 2 6 6 O 1.21280 * 120.00423 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.46901 * 109.46921 * 179.97438 * 7 5 4 9 9 C 1.47839 * 111.00094 * 290.83999 * 8 7 5 10 10 C 1.54910 * 104.79725 * 213.63685 * 9 8 7 11 11 C 1.55136 * 101.65131 * 37.07211 * 10 9 8 12 12 H 1.09001 * 110.85709 * 82.80260 * 11 10 9 13 13 N 1.46506 * 110.70573 * 205.96578 * 11 10 9 14 14 C 1.46497 * 120.00088 * 53.59628 * 13 11 10 15 15 C 1.34778 * 119.99710 * 233.59767 * 13 11 10 16 16 O 1.21277 * 120.00122 * 0.02562 * 15 13 11 17 17 C 1.50700 * 119.99671 * 179.97438 * 15 13 11 18 18 S 1.81009 * 109.46902 * 180.02562 * 17 15 13 19 19 C 1.76203 * 99.99887 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99923 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00118 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99545 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00375 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46917 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47227 * 119.99409 * 23 21 19 26 26 H 1.48494 * 109.47450 * 240.00032 * 23 21 19 27 27 C 1.47445 * 110.99753 * 169.99878 * 8 7 5 28 28 H 4.40636 * 5.51447 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.46952 * 326.45591 * 3 2 1 30 30 H 1.09002 * 109.47120 * 206.45729 * 3 2 1 31 31 H 0.96995 * 120.00423 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47060 * 299.99722 * 7 5 4 33 33 H 1.09001 * 109.47380 * 59.99809 * 7 5 4 34 34 H 1.08995 * 110.37551 * 332.46590 * 9 8 7 35 35 H 1.09005 * 110.37015 * 94.81188 * 9 8 7 36 36 H 1.08999 * 110.99109 * 278.98194 * 10 9 8 37 37 H 1.08998 * 111.02693 * 155.18053 * 10 9 8 38 38 H 1.09008 * 109.46816 * 90.00460 * 14 13 11 39 39 H 1.09001 * 109.47068 * 209.99754 * 14 13 11 40 40 H 1.09001 * 109.46977 * 330.00441 * 14 13 11 41 41 H 1.08998 * 109.47310 * 300.00303 * 17 15 13 42 42 H 1.08997 * 109.47220 * 60.00438 * 17 15 13 43 43 H 0.97004 * 119.99741 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.88966 * 242.66278 * 27 8 7 45 45 H 1.09002 * 109.88969 * 3.85061 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0845 -1.3786 5 6 4.4594 -0.0996 -1.6243 6 8 5.2476 -0.0423 -0.7043 7 6 4.9618 -0.1866 -3.0424 8 7 6.4308 -0.1860 -3.0424 9 6 6.9601 1.1317 -2.6314 10 6 8.2660 1.3052 -3.4464 11 6 7.8774 0.6590 -4.8022 12 1 7.3366 1.3679 -5.4292 13 7 9.0660 0.1579 -5.4968 14 6 9.9821 -0.7584 -4.8131 15 6 9.3166 0.5399 -6.7648 16 8 8.5585 1.2988 -7.3306 17 6 10.5396 0.0248 -7.4790 18 16 10.5965 0.7144 -9.1517 19 6 12.0800 -0.0323 -9.7401 20 1 12.6434 -0.6933 -9.0980 21 6 12.5246 0.2288 -11.0288 22 7 11.8376 1.0339 -11.8114 23 14 14.0977 -0.5623 -11.6524 24 1 14.6778 -1.4180 -10.5863 25 1 13.7946 -1.3938 -12.8449 26 1 15.0715 0.4962 -12.0216 27 6 6.9593 -0.5076 -4.3808 28 1 -1.0500 0.0002 0.0000 29 1 3.0097 -0.8557 0.5679 30 1 3.0089 0.9209 0.4579 31 1 2.5041 -0.1307 -2.1144 32 1 4.5985 -1.1063 -3.5008 33 1 4.5985 0.6703 -3.6098 34 1 6.2500 1.9203 -2.8802 35 1 7.1761 1.1375 -1.5630 36 1 9.0917 0.7677 -2.9801 37 1 8.5111 2.3598 -3.5725 38 1 9.6680 -1.7868 -4.9919 39 1 10.9924 -0.6152 -5.1965 40 1 9.9674 -0.5549 -3.7423 41 1 11.4333 0.3251 -6.9320 42 1 10.4963 -1.0628 -7.5354 43 1 12.1480 1.2161 -12.7122 44 1 7.5320 -1.4342 -4.3405 45 1 6.1375 -0.6076 -5.0898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567902817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = 7.228783 kcal Electronic energy + Delta-G solvation = -25959.226904 eV Core-core repulsion = 22105.383453 eV Total energy + Delta-G solvation = -3853.843451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54401 -39.73002 -38.18713 -35.91493 -35.08077 -33.14064 -32.43345 -31.94462 -29.66509 -28.80688 -27.88918 -26.76230 -25.68480 -25.39576 -21.65793 -21.34484 -20.82693 -19.20316 -19.10138 -17.77783 -17.41495 -16.86417 -16.77404 -16.22752 -15.96029 -15.45130 -15.31167 -14.81297 -14.72858 -14.66940 -14.10042 -13.87518 -13.77417 -13.51143 -13.30809 -13.04218 -12.92130 -12.63210 -12.46109 -12.25343 -11.99183 -11.97969 -11.57131 -11.51345 -11.37702 -11.07465 -11.03441 -11.02371 -10.82642 -10.75048 -10.12139 -9.80264 -9.56561 -9.38971 -9.07867 -8.77476 -8.40197 -8.23096 -6.50914 -6.22398 -3.92941 1.83015 2.18051 2.29133 2.82683 2.97447 3.01696 3.21269 3.25749 3.30848 3.57342 3.68840 3.75638 4.19716 4.31842 4.47667 4.50479 4.77973 4.83242 4.92806 4.99588 5.01112 5.04123 5.07883 5.12974 5.16673 5.21658 5.29016 5.41291 5.45777 5.57908 5.64607 5.76589 5.81893 5.84848 5.90850 5.93487 6.02397 6.13439 6.54580 6.57446 6.68348 6.92694 7.02829 7.51594 7.59586 7.81996 8.34942 8.52394 9.23216 10.85107 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035903 B = 0.001681 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.696751 B =16652.676270 C =16983.783771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.212 4.212 3 C 0.232 3.768 4 N -0.735 5.735 5 C 0.518 3.482 6 O -0.516 6.516 7 C 0.030 3.970 8 N -0.508 5.508 9 C 0.048 3.952 10 C -0.142 4.142 11 C 0.123 3.877 12 H 0.108 0.892 13 N -0.614 5.614 14 C 0.076 3.924 15 C 0.535 3.465 16 O -0.518 6.518 17 C -0.149 4.149 18 S -0.063 6.063 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.032 3.968 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.404 0.596 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.088 0.912 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 -3.580 23.549 29.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.212 4.212 3 C 0.110 3.890 4 N -0.390 5.390 5 C 0.303 3.697 6 O -0.390 6.390 7 C -0.101 4.101 8 N -0.232 5.232 9 C -0.079 4.079 10 C -0.181 4.181 11 C 0.018 3.982 12 H 0.126 0.874 13 N -0.349 5.349 14 C -0.067 4.067 15 C 0.323 3.677 16 O -0.393 6.393 17 C -0.300 4.300 18 S 0.163 5.837 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.097 4.097 28 H 0.239 0.761 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.542 -2.715 23.562 30.105 hybrid contribution 0.977 -0.906 -0.636 1.476 sum -17.565 -3.620 22.926 29.107 Atomic orbital electron populations 1.25072 0.95999 1.00612 0.97028 1.22934 0.94290 1.01030 1.02941 1.18035 0.83040 1.03642 0.84289 1.45994 1.07438 1.77086 1.08459 1.20602 0.81453 0.75865 0.91744 1.90720 1.54862 1.47404 1.45985 1.22223 0.90656 1.03712 0.93537 1.63363 1.04719 1.30174 1.24981 1.23063 0.95039 0.88461 1.01340 1.23129 0.98286 1.01812 0.94868 1.22198 0.86893 0.95645 0.93485 0.87431 1.47751 1.24947 1.48559 1.13663 1.21797 0.93807 0.93021 0.98049 1.20387 0.86801 0.80119 0.80378 1.90680 1.48654 1.34672 1.65251 1.23556 0.97449 1.04476 1.04492 1.85390 1.33693 1.62242 1.02325 1.22901 1.10078 1.33381 1.01852 0.90867 1.24991 0.97850 0.95072 0.95661 1.70033 1.38193 1.33943 1.08140 0.86117 0.81668 0.78968 0.78745 1.19591 1.20572 1.20574 1.23224 0.98488 0.99609 0.88332 0.76103 0.88991 0.89058 0.76228 0.87573 0.91300 0.93667 0.88785 0.89761 0.90164 0.92597 0.90545 0.90825 0.89162 0.89169 0.92252 0.89357 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 19.25 29.55 0.57 -0.22 16 2 C -0.21 -1.26 13.46 -37.12 -0.50 -1.76 16 3 C 0.23 1.43 6.15 -6.83 -0.04 1.39 16 4 N -0.74 -4.49 5.54 -63.16 -0.35 -4.84 16 5 C 0.52 4.47 7.63 -10.98 -0.08 4.39 16 6 O -0.52 -6.36 15.04 5.56 0.08 -6.28 16 7 C 0.03 0.23 5.05 -4.97 -0.03 0.20 16 8 N -0.51 -5.00 4.86 -232.69 -1.13 -6.14 16 9 C 0.05 0.48 5.74 -2.30 -0.01 0.47 16 10 C -0.14 -1.46 6.60 -24.59 -0.16 -1.63 16 11 C 0.12 1.50 3.35 -66.11 -0.22 1.28 16 12 H 0.11 1.52 7.00 -51.93 -0.36 1.16 16 13 N -0.61 -8.55 2.88 -171.84 -0.49 -9.05 16 14 C 0.08 0.81 9.19 59.85 0.55 1.36 16 15 C 0.53 10.05 7.69 -10.98 -0.08 9.96 16 16 O -0.52 -11.66 15.23 5.56 0.08 -11.57 16 17 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 23 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.03 0.33 6.51 -2.83 -0.02 0.31 16 28 H 0.22 0.31 7.80 -54.09 -0.42 -0.12 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.40 1.59 8.45 -40.82 -0.34 1.24 16 32 H 0.11 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 34 H 0.04 0.42 7.62 -51.93 -0.40 0.02 16 35 H 0.09 1.03 7.38 -51.93 -0.38 0.64 16 36 H 0.08 0.84 6.01 -51.93 -0.31 0.52 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.54 7.90 -51.92 -0.41 0.13 16 39 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 40 H 0.07 0.66 5.99 -51.93 -0.31 0.35 16 41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.92 7.01 -51.93 -0.36 0.56 16 45 H 0.06 0.61 7.55 -51.93 -0.39 0.22 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -36.62 389.62 -8.58 -45.20 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.48 Total: -0.29 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 0.34 Total: 0.06 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.24 Total: -45.37 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.62 -8.58 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567902817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.426 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds