Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 120.00309 * 2 1 4 4 N 1.34777 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.39558 * 119.99808 * 185.52429 * 4 2 1 6 6 C 1.39067 * 119.93512 * 24.87462 * 5 4 2 7 7 C 1.37694 * 120.10131 * 179.97438 * 6 5 4 8 8 C 1.39732 * 119.97101 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.06984 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99471 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99489 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47013 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.46871 * 60.00312 * 13 12 11 15 15 O 1.42899 * 109.47356 * 300.00237 * 13 12 11 16 16 C 1.53002 * 109.47405 * 179.97438 * 13 12 11 17 17 N 1.46491 * 109.47462 * 185.00094 * 16 13 12 18 18 C 1.36940 * 120.00334 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99808 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99559 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00119 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47474 * 90.00162 * 22 20 18 24 24 H 1.48504 * 109.47007 * 209.99911 * 22 20 18 25 25 H 1.48500 * 109.47153 * 329.99955 * 22 20 18 26 26 C 1.39752 * 119.86684 * 0.25237 * 8 7 6 27 27 C 1.37874 * 119.89456 * 359.46341 * 26 8 7 28 28 F 1.35098 * 119.98380 * 180.25196 * 27 26 8 29 29 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47411 * 299.99957 * 1 2 3 31 31 H 1.09008 * 109.47327 * 59.99693 * 1 2 3 32 32 H 0.96998 * 120.00016 * 5.52430 * 4 2 1 33 33 H 1.08001 * 119.94521 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.01359 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00180 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47564 * 299.99939 * 12 11 9 37 37 H 1.09003 * 109.47128 * 60.00853 * 12 11 9 38 38 H 0.96690 * 114.00167 * 300.00090 * 15 13 12 39 39 H 1.08997 * 109.47253 * 305.00622 * 16 13 12 40 40 H 1.09001 * 109.46546 * 65.00038 * 16 13 12 41 41 H 0.97003 * 119.99832 * 0.02562 * 17 16 13 42 42 H 0.97000 * 119.99289 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.05122 * 179.73108 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1041 0.7314 7 6 5.5905 -0.1036 0.8485 8 6 6.3342 -1.1753 0.3478 9 6 7.8050 -1.1768 0.4716 10 8 8.3707 -0.2446 1.0094 11 7 8.5209 -2.2116 -0.0114 12 6 9.9808 -2.2127 0.1111 13 6 10.5439 -3.4915 -0.5122 14 1 10.2676 -3.5343 -1.5658 15 8 10.0080 -4.6286 0.1673 16 6 12.0686 -3.4925 -0.3849 17 7 12.6164 -4.6564 -1.0856 18 6 13.9691 -4.8684 -1.1075 19 1 14.6321 -4.1772 -0.6085 20 6 14.4882 -5.9711 -1.7719 21 7 15.7884 -6.1750 -1.7924 22 14 13.3416 -7.1663 -2.6356 23 1 13.1364 -6.7285 -4.0397 24 1 13.9417 -8.5246 -2.6233 25 1 12.0350 -7.1960 -1.9304 26 6 5.6831 -2.2432 -0.2757 27 6 4.3087 -2.2408 -0.3848 28 9 3.6770 -3.2746 -0.9827 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6992 -2.0052 -0.0818 33 1 3.6441 0.7247 1.1181 34 1 6.0916 0.7252 1.3264 35 1 8.0696 -2.9551 -0.4407 36 1 10.3896 -1.3451 -0.4069 37 1 10.2571 -2.1704 1.1647 38 1 10.2150 -4.6563 1.1114 39 1 12.4706 -2.5804 -0.8260 40 1 12.3451 -3.5391 0.6684 41 1 12.0210 -5.2771 -1.5341 42 1 16.1511 -6.9458 -2.2564 43 1 6.2553 -3.0710 -0.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568595162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -119.779888 kcal Electronic energy + Delta-G solvation = -28000.175436 eV Core-core repulsion = 23574.611300 eV Total energy + Delta-G solvation = -4425.564136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.43419 -41.19077 -40.20206 -38.48624 -37.67782 -35.47795 -34.63751 -34.19164 -31.90429 -31.45008 -31.03219 -29.91715 -28.91742 -25.86921 -24.43429 -23.30704 -22.16763 -21.65413 -21.37652 -20.61083 -19.09344 -18.21368 -17.77928 -17.68217 -16.95242 -16.67682 -16.28592 -16.14596 -15.98474 -15.83043 -15.35450 -14.92144 -14.86781 -14.61079 -14.41881 -14.04728 -13.79447 -13.58795 -13.40506 -13.29457 -13.22476 -12.86257 -12.79018 -12.57383 -12.41239 -12.17992 -12.02165 -11.32896 -11.18374 -10.88731 -10.84836 -10.57124 -10.26613 -10.16981 -9.79046 -9.57969 -9.41544 -9.28499 -8.94499 -8.68446 -7.27653 -5.79099 -3.15523 0.16871 0.66769 1.79855 2.26469 2.52291 2.88586 3.35103 3.38228 3.43671 3.45672 3.56037 3.94731 4.14691 4.34572 4.43585 4.50111 4.58565 4.59019 4.66362 4.70892 4.77029 4.87804 5.08788 5.14516 5.25813 5.41646 5.44279 5.49752 5.55105 5.64186 5.73611 5.74102 5.82691 5.87884 6.19521 6.31597 6.39903 6.52065 6.58280 7.27489 7.33673 7.73409 7.96420 7.97779 8.39304 9.18589 9.90513 10.09872 11.38878 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.001892 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.918702 B =14793.839081 C =15759.579716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.518 6.518 4 N -0.668 5.668 5 C 0.141 3.859 6 C -0.116 4.116 7 C -0.044 4.044 8 C -0.124 4.124 9 C 0.559 3.441 10 O -0.534 6.534 11 N -0.716 5.716 12 C 0.090 3.910 13 C 0.084 3.916 14 H 0.105 0.895 15 O -0.557 6.557 16 C 0.132 3.868 17 N -0.749 5.749 18 C -0.249 4.249 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.273 1.273 26 C -0.096 4.096 27 C 0.059 3.941 28 F -0.134 7.134 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.417 0.583 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.404 0.596 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.376 0.624 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.365 0.635 42 H 0.260 0.740 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.962 10.560 5.438 36.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.392 6.392 4 N -0.313 5.313 5 C 0.045 3.955 6 C -0.136 4.136 7 C -0.063 4.063 8 C -0.128 4.128 9 C 0.346 3.654 10 O -0.412 6.412 11 N -0.368 5.368 12 C -0.035 4.035 13 C 0.024 3.976 14 H 0.123 0.877 15 O -0.362 6.362 16 C 0.003 3.997 17 N -0.395 5.395 18 C -0.379 4.379 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.199 1.199 26 C -0.116 4.116 27 C 0.038 3.962 28 F -0.113 7.113 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.254 0.746 33 H 0.179 0.821 34 H 0.166 0.834 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.224 0.776 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.199 0.801 42 H 0.070 0.930 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -34.190 11.849 5.251 36.564 hybrid contribution -0.971 -1.907 -0.580 2.217 sum -35.161 9.942 4.671 36.836 Atomic orbital electron populations 1.21877 0.89938 1.04940 1.06131 1.21132 0.91179 0.82732 0.74795 1.90734 1.70203 1.31212 1.47095 1.43593 1.04810 1.10846 1.72070 1.17977 0.83513 0.95663 0.98393 1.21317 0.94522 0.98775 0.99024 1.21288 0.92727 0.97094 0.95228 1.19807 0.93559 0.96069 1.03371 1.18020 0.86344 0.82435 0.78644 1.90808 1.71829 1.35122 1.43441 1.45831 1.07898 1.22676 1.60391 1.22131 0.79124 0.99740 1.02470 1.22471 0.94399 0.83601 0.97126 0.87714 1.86544 1.77864 1.45449 1.26364 1.21172 0.89612 0.92079 0.96824 1.42566 1.04996 1.27208 1.64777 1.19045 0.81568 1.08149 1.29104 0.89233 1.24673 0.95524 0.98312 1.00471 1.69711 1.10118 1.30495 1.47691 0.86539 0.80778 0.81311 0.79954 1.21104 1.21730 1.19878 1.21157 0.92158 0.99282 0.99051 1.17121 0.90364 0.87126 1.01622 1.91508 1.82138 1.56172 1.81455 0.90061 0.87868 0.87971 0.74600 0.82131 0.83355 0.75997 0.89918 0.90553 0.77596 0.94374 0.94981 0.80121 0.93011 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.29 10.39 36.00 0.37 0.09 16 2 C 0.51 3.10 7.74 -10.99 -0.09 3.01 16 3 O -0.52 -5.22 14.24 5.55 0.08 -5.15 16 4 N -0.67 -3.73 5.29 -9.81 -0.05 -3.78 16 5 C 0.14 1.16 6.44 -83.64 -0.54 0.62 16 6 C -0.12 -1.04 8.69 -39.47 -0.34 -1.39 16 7 C -0.04 -0.42 9.58 -39.22 -0.38 -0.80 16 8 C -0.12 -1.24 5.88 -104.95 -0.62 -1.86 16 9 C 0.56 6.79 7.76 -12.44 -0.10 6.69 16 10 O -0.53 -8.26 16.34 5.29 0.09 -8.18 16 11 N -0.72 -7.70 5.40 -61.33 -0.33 -8.03 16 12 C 0.09 1.06 5.34 -4.04 -0.02 1.04 16 13 C 0.08 1.15 3.08 -26.73 -0.08 1.06 16 14 H 0.11 1.44 8.14 -51.92 -0.42 1.02 16 15 O -0.56 -7.68 13.03 -35.23 -0.46 -8.14 16 16 C 0.13 2.36 5.90 -4.05 -0.02 2.33 16 17 N -0.75 -17.50 5.35 -59.91 -0.32 -17.82 16 18 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 22 Si 0.88 22.19 27.73 -169.99 -4.71 17.47 16 23 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 26 C -0.10 -0.82 9.51 -39.15 -0.37 -1.19 16 27 C 0.06 0.50 7.29 -39.32 -0.29 0.21 16 28 F -0.13 -1.10 16.79 2.25 0.04 -1.06 16 29 H 0.08 -0.05 7.92 -51.93 -0.41 -0.46 16 30 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.14 8.14 -51.92 -0.42 -0.29 16 32 H 0.42 1.16 8.28 -40.82 -0.34 0.83 16 33 H 0.16 1.48 5.77 -52.49 -0.30 1.17 16 34 H 0.15 1.40 7.64 -52.48 -0.40 1.00 16 35 H 0.40 3.67 6.37 -40.82 -0.26 3.41 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.38 4.23 9.05 45.56 0.41 4.64 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.37 8.49 5.53 -40.82 -0.23 8.27 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.15 1.00 6.39 -52.49 -0.34 0.67 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -37.16 372.76 -6.42 -43.57 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.41 Total: 11.35 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.72 Total: 2.71 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.07 Total: -58.19 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.29 Total: -21.47 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.16 -6.42 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568595162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.208 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds