Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21283 * 120.00309 * 2 1 4 4 N 1.34777 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.39558 * 119.99808 * 185.52429 * 4 2 1 6 6 C 1.39067 * 119.93512 * 24.87462 * 5 4 2 7 7 C 1.37694 * 120.10131 * 179.97438 * 6 5 4 8 8 C 1.39732 * 119.97101 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.06984 * 179.97438 * 8 7 6 10 10 O 1.21581 * 119.99471 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99829 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99489 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47013 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.46871 * 60.00312 * 13 12 11 15 15 O 1.42899 * 109.47356 * 300.00237 * 13 12 11 16 16 C 1.53002 * 109.47405 * 179.97438 * 13 12 11 17 17 N 1.46491 * 109.47462 * 185.00094 * 16 13 12 18 18 C 1.36940 * 120.00334 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99808 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99559 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00119 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47474 * 90.00162 * 22 20 18 24 24 H 1.48504 * 109.47007 * 209.99911 * 22 20 18 25 25 H 1.48500 * 109.47153 * 329.99955 * 22 20 18 26 26 C 1.39752 * 119.86684 * 0.25237 * 8 7 6 27 27 C 1.37874 * 119.89456 * 359.46341 * 26 8 7 28 28 F 1.35098 * 119.98380 * 180.25196 * 27 26 8 29 29 H 1.08999 * 109.47666 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47411 * 299.99957 * 1 2 3 31 31 H 1.09008 * 109.47327 * 59.99693 * 1 2 3 32 32 H 0.96998 * 120.00016 * 5.52430 * 4 2 1 33 33 H 1.08001 * 119.94521 * 359.97438 * 6 5 4 34 34 H 1.08003 * 120.01359 * 179.97438 * 7 6 5 35 35 H 0.96998 * 120.00180 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.47564 * 299.99939 * 12 11 9 37 37 H 1.09003 * 109.47128 * 60.00853 * 12 11 9 38 38 H 0.96690 * 114.00167 * 300.00090 * 15 13 12 39 39 H 1.08997 * 109.47253 * 305.00622 * 16 13 12 40 40 H 1.09001 * 109.46546 * 65.00038 * 16 13 12 41 41 H 0.97003 * 119.99832 * 0.02562 * 17 16 13 42 42 H 0.97000 * 119.99289 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.05122 * 179.73108 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5715 -1.1701 0.1158 6 6 4.2186 -0.1041 0.7314 7 6 5.5905 -0.1036 0.8485 8 6 6.3342 -1.1753 0.3478 9 6 7.8050 -1.1768 0.4716 10 8 8.3707 -0.2446 1.0094 11 7 8.5209 -2.2116 -0.0114 12 6 9.9808 -2.2127 0.1111 13 6 10.5439 -3.4915 -0.5122 14 1 10.2676 -3.5343 -1.5658 15 8 10.0080 -4.6286 0.1673 16 6 12.0686 -3.4925 -0.3849 17 7 12.6164 -4.6564 -1.0856 18 6 13.9691 -4.8684 -1.1075 19 1 14.6321 -4.1772 -0.6085 20 6 14.4882 -5.9711 -1.7719 21 7 15.7884 -6.1750 -1.7924 22 14 13.3416 -7.1663 -2.6356 23 1 13.1364 -6.7285 -4.0397 24 1 13.9417 -8.5246 -2.6233 25 1 12.0350 -7.1960 -1.9304 26 6 5.6831 -2.2432 -0.2757 27 6 4.3087 -2.2408 -0.3848 28 9 3.6770 -3.2746 -0.9827 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6992 -2.0052 -0.0818 33 1 3.6441 0.7247 1.1181 34 1 6.0916 0.7252 1.3264 35 1 8.0696 -2.9551 -0.4407 36 1 10.3896 -1.3451 -0.4069 37 1 10.2571 -2.1704 1.1647 38 1 10.2150 -4.6563 1.1114 39 1 12.4706 -2.5804 -0.8260 40 1 12.3451 -3.5391 0.6684 41 1 12.0210 -5.2771 -1.5341 42 1 16.1511 -6.9458 -2.2564 43 1 6.2553 -3.0710 -0.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568595162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -150.797048 kcal Electronic energy + Delta-G solvation = -28001.520441 eV Core-core repulsion = 23574.611300 eV Total energy + Delta-G solvation = -4426.909141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.07425 -41.80544 -41.04223 -39.35092 -38.73426 -36.22843 -36.09233 -35.40915 -33.49699 -32.44301 -31.66873 -30.94317 -29.70546 -27.26224 -25.24678 -24.35967 -23.52777 -22.86023 -22.10543 -21.42314 -19.93119 -19.65341 -18.89681 -18.29463 -17.70054 -17.58968 -17.23866 -17.09617 -16.68867 -16.52476 -16.36445 -16.28099 -15.91209 -15.50340 -15.42092 -15.29251 -14.97071 -14.65446 -14.32580 -14.27172 -14.04790 -13.72070 -13.70131 -13.37283 -13.28715 -13.21139 -13.04896 -12.84303 -12.80122 -12.23609 -11.88345 -11.83370 -11.82106 -11.40728 -11.08684 -11.00843 -10.87479 -10.25034 -10.08576 -9.33445 -9.31136 -8.03396 -5.37218 -0.54880 -0.01082 1.25978 1.40372 1.42807 1.51146 1.72837 1.84439 1.96611 2.49027 2.58185 2.88721 3.26291 3.33588 3.44952 3.49973 3.59831 3.71893 3.89693 3.96960 4.03297 4.09475 4.21810 4.30576 4.44172 4.55619 4.60731 4.63230 4.72416 4.81548 4.87725 4.93939 5.01959 5.10645 5.17446 5.19232 5.27063 5.64441 5.74049 6.18766 6.19937 6.40618 6.76341 6.90367 7.07461 7.07755 7.82992 8.02151 9.17817 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.001892 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.918702 B =14793.839081 C =15759.579716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.508 3.492 3 O -0.563 6.563 4 N -0.660 5.660 5 C 0.145 3.855 6 C -0.123 4.123 7 C -0.047 4.047 8 C -0.137 4.137 9 C 0.560 3.440 10 O -0.574 6.574 11 N -0.705 5.705 12 C 0.099 3.901 13 C 0.105 3.895 14 H 0.111 0.889 15 O -0.563 6.563 16 C 0.124 3.876 17 N -0.752 5.752 18 C -0.239 4.239 19 H 0.056 0.944 20 C -0.063 4.063 21 N -0.983 5.983 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.297 1.297 25 H -0.250 1.250 26 C -0.087 4.087 27 C 0.057 3.943 28 F -0.130 7.130 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.432 0.568 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.388 0.612 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.563 9.466 4.911 40.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.300 3.700 3 O -0.441 6.441 4 N -0.306 5.306 5 C 0.047 3.953 6 C -0.143 4.143 7 C -0.067 4.067 8 C -0.141 4.141 9 C 0.349 3.651 10 O -0.455 6.455 11 N -0.357 5.357 12 C -0.026 4.026 13 C 0.045 3.955 14 H 0.129 0.871 15 O -0.370 6.370 16 C -0.003 4.003 17 N -0.398 5.398 18 C -0.370 4.370 19 H 0.075 0.925 20 C -0.255 4.255 21 N -0.633 5.633 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.224 1.224 25 H -0.175 1.175 26 C -0.107 4.107 27 C 0.035 3.965 28 F -0.109 7.109 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.272 0.728 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.238 0.762 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -37.874 10.734 4.736 39.650 hybrid contribution 0.112 -1.481 -0.347 1.525 sum -37.763 9.254 4.389 39.127 Atomic orbital electron populations 1.21941 0.86203 1.07140 1.06785 1.22006 0.92845 0.81917 0.73230 1.90720 1.71419 1.32795 1.49142 1.43684 1.03822 1.11753 1.71294 1.18088 0.84871 0.95068 0.97227 1.21265 0.94210 0.99157 0.99687 1.21291 0.93090 0.97033 0.95258 1.19605 0.92318 0.97065 1.05097 1.18274 0.87115 0.81901 0.77836 1.90789 1.72692 1.36619 1.45375 1.45680 1.07326 1.22719 1.59946 1.21920 0.79761 0.98556 1.02340 1.22155 0.91152 0.84423 0.97751 0.87115 1.86522 1.77579 1.45369 1.27497 1.21402 0.92729 0.90018 0.96195 1.42538 1.03123 1.28803 1.65357 1.19049 0.83539 1.06976 1.27408 0.92548 1.25531 0.97142 1.00718 1.02115 1.69895 1.12469 1.31464 1.49521 0.85369 0.79271 0.78021 0.78893 1.20385 1.22357 1.17453 1.21277 0.92398 0.99021 0.97968 1.17080 0.90341 0.87258 1.01786 1.91521 1.82029 1.55945 1.81379 0.87146 0.86984 0.87310 0.72822 0.82601 0.83958 0.74735 0.90223 0.90428 0.76211 0.94314 0.94657 0.79738 0.93318 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.12 10.39 71.23 0.74 0.62 16 2 C 0.51 5.39 7.74 87.65 0.68 6.07 16 3 O -0.56 -11.20 14.24 -3.04 -0.04 -11.25 16 4 N -0.66 -6.09 5.29 -303.32 -1.60 -7.70 16 5 C 0.15 2.18 6.44 38.37 0.25 2.42 16 6 C -0.12 -2.18 8.69 22.34 0.19 -1.98 16 7 C -0.05 -0.91 9.58 22.50 0.22 -0.69 16 8 C -0.14 -2.62 5.88 -20.08 -0.12 -2.74 16 9 C 0.56 13.13 7.76 86.71 0.67 13.80 16 10 O -0.57 -17.78 16.34 -3.97 -0.06 -17.84 16 11 N -0.70 -13.79 5.40 -466.20 -2.52 -16.31 16 12 C 0.10 2.17 5.34 86.38 0.46 2.63 16 13 C 0.11 2.62 3.08 30.60 0.09 2.71 16 14 H 0.11 2.70 8.14 -2.38 -0.02 2.68 16 15 O -0.56 -13.80 13.03 -148.98 -1.94 -15.74 16 16 C 0.12 4.26 5.90 86.38 0.51 4.77 16 17 N -0.75 -34.09 5.35 -343.47 -1.84 -35.92 16 18 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 21 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 22 Si 0.96 45.43 27.73 68.60 1.90 47.34 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 26 C -0.09 -1.30 9.51 22.55 0.21 -1.09 16 27 C 0.06 0.84 7.29 22.44 0.16 1.00 16 28 F -0.13 -1.77 16.79 44.97 0.76 -1.02 16 29 H 0.11 -0.55 7.92 -2.39 -0.02 -0.57 16 30 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.11 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.43 1.23 8.28 -92.71 -0.77 0.47 16 33 H 0.16 2.94 5.77 -2.91 -0.02 2.93 16 34 H 0.14 2.84 7.64 -2.91 -0.02 2.82 16 35 H 0.41 6.37 6.37 -92.71 -0.59 5.77 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.39 7.62 9.05 -74.06 -0.67 6.95 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.37 16.16 5.53 -92.71 -0.51 15.65 16 42 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 43 H 0.16 1.76 6.39 -2.91 -0.02 1.74 16 Total: -1.00 -81.50 372.76 -1.11 -82.61 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -1.48 Total: 27.11 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.42 Total: 11.55 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.66 Total: -122.76 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.05 Total: -44.83 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.76 Total: -1.02 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.34 kcal Total: -81.50 -1.11 -82.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568595162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.183 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds