Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99738 * 2 1 4 4 C 1.52999 * 109.47142 * 270.00046 * 3 2 1 5 5 C 1.53001 * 109.46943 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00208 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00162 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47184 * 60.00071 * 11 9 7 13 13 H 1.48502 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46841 * 300.00093 * 11 9 7 15 15 C 1.34772 * 120.00259 * 180.02562 * 2 1 3 16 16 O 1.21625 * 120.00298 * 182.82429 * 15 2 1 17 17 C 1.47275 * 119.99631 * 2.81680 * 15 2 1 18 18 C 1.35206 * 123.13769 * 173.21058 * 17 15 2 19 19 S 1.70941 * 108.82828 * 180.02562 * 18 17 15 20 20 C 1.70775 * 91.12654 * 0.02562 * 19 18 17 21 21 C 1.50697 * 124.71973 * 179.97438 * 20 19 18 22 22 H 1.09001 * 110.33119 * 197.28927 * 21 20 19 23 23 C 1.54487 * 110.37292 * 75.03865 * 21 20 19 24 24 C 1.54505 * 104.06252 * 217.19092 * 23 21 20 25 25 C 1.54479 * 104.06450 * 359.97438 * 24 23 21 26 26 O 1.44422 * 104.80377 * 23.97964 * 25 24 23 27 27 N 1.28643 * 110.56092 * 0.02562 * 20 19 18 28 28 H 1.08997 * 109.46846 * 264.01428 * 1 2 3 29 29 H 1.08999 * 109.46999 * 24.01779 * 1 2 3 30 30 H 1.08994 * 109.46946 * 144.01255 * 1 2 3 31 31 H 1.09001 * 109.46889 * 30.00002 * 3 2 1 32 32 H 1.08997 * 109.46865 * 149.99827 * 3 2 1 33 33 H 1.09001 * 109.47193 * 299.99771 * 4 3 2 34 34 H 1.08997 * 109.47419 * 60.00120 * 4 3 2 35 35 H 1.09006 * 109.47055 * 299.99758 * 5 4 3 36 36 H 1.08997 * 109.47339 * 59.99613 * 5 4 3 37 37 H 0.97002 * 120.00431 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00069 * 179.97438 * 10 9 7 39 39 H 1.08007 * 125.58889 * 0.05628 * 18 17 15 40 40 H 1.08997 * 110.51048 * 335.83406 * 23 21 20 41 41 H 1.08997 * 110.51193 * 98.40579 * 23 21 20 42 42 H 1.08992 * 110.51574 * 118.64270 * 24 23 21 43 43 H 1.09005 * 110.51444 * 241.22072 * 24 23 21 44 44 H 1.09001 * 110.37657 * 142.80874 * 25 24 23 45 45 H 1.09005 * 110.37461 * 265.03941 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4424 6 7 3.4627 3.4579 -2.8236 7 6 4.1359 4.6238 -3.0738 8 1 4.4868 5.2316 -2.2529 9 6 4.3682 5.0240 -4.3825 10 7 3.9410 4.2831 -5.3829 11 14 5.2872 6.6142 -4.7238 12 1 6.6441 6.5400 -4.1251 13 1 5.4031 6.8138 -6.1907 14 1 4.5443 7.7530 -4.1268 15 6 2.1390 -1.1671 -0.0005 16 8 3.3541 -1.1678 0.0514 17 6 1.4039 -2.4418 -0.0638 18 6 2.0137 -3.6406 -0.2018 19 16 0.8217 -4.8654 -0.2340 20 6 -0.4213 -3.7071 -0.0622 21 6 -1.8923 -4.0290 -0.0021 22 1 -2.4840 -3.1346 -0.1967 23 6 -2.2564 -4.6257 1.3756 24 6 -3.3143 -5.7037 1.0501 25 6 -3.4647 -5.6305 -0.4856 26 8 -2.2196 -5.0664 -0.9519 27 7 0.0726 -2.5213 0.0078 28 1 -0.3633 -0.1072 1.0221 29 1 -0.3633 0.9387 -0.4183 30 1 -0.3633 -0.8315 -0.6038 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 3.0416 0.9509 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6292 3.7951 -0.9285 36 1 4.1704 2.9045 -0.9287 37 1 3.1479 2.9119 -3.5609 38 1 4.1030 4.5629 -6.2974 39 1 3.0794 -3.7985 -0.2786 40 1 -1.3801 -5.0783 1.8394 41 1 -2.6775 -3.8582 2.0249 42 1 -2.9610 -6.6893 1.3529 43 1 -4.2600 -5.4710 1.5396 44 1 -3.6083 -6.6280 -0.9009 45 1 -4.3003 -4.9843 -0.7547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569202500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -9.414055 kcal Electronic energy + Delta-G solvation = -26332.138349 eV Core-core repulsion = 22477.573210 eV Total energy + Delta-G solvation = -3854.565139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95782 -39.95663 -38.70490 -36.14751 -34.72734 -32.83055 -32.28007 -31.89934 -29.81004 -29.15505 -26.77404 -26.50280 -24.95762 -23.69055 -22.57531 -22.00597 -21.07711 -20.74511 -19.70525 -18.46948 -17.10524 -16.98773 -16.74899 -16.47930 -15.93596 -15.76640 -15.66396 -14.82793 -14.53048 -14.38077 -14.26923 -14.23783 -13.60498 -13.37915 -13.22732 -12.96550 -12.90502 -12.64433 -12.40374 -12.23316 -12.06997 -11.92761 -11.84018 -11.76584 -11.31109 -10.87005 -10.78697 -10.70433 -10.52788 -10.32957 -10.15286 -10.04196 -9.97413 -9.75873 -9.62854 -9.23232 -8.79903 -8.54169 -6.84783 -5.69291 -2.97906 0.18315 0.88134 1.32344 1.66474 2.89714 3.12413 3.23719 3.49164 3.52654 3.54402 3.75375 3.96418 4.23539 4.31035 4.47934 4.65454 4.65748 4.71533 4.81430 4.98746 5.08908 5.14232 5.22992 5.25371 5.29609 5.36115 5.41127 5.41527 5.45432 5.63106 5.68311 5.77546 5.99048 6.08295 6.14605 6.16317 6.37511 6.46487 6.62929 6.93820 6.95839 7.04697 7.38655 7.75789 8.12632 8.49692 9.60189 10.19434 10.54134 11.53804 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.001925 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.113587 B =14538.854650 C =14805.176593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.596 5.596 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.589 3.411 16 O -0.531 6.531 17 C 0.015 3.985 18 C -0.228 4.228 19 S 0.249 5.751 20 C 0.012 3.988 21 C 0.154 3.846 22 H 0.104 0.896 23 C -0.146 4.146 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.365 6.365 27 N -0.426 5.426 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.192 0.808 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 -25.996 16.673 35.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.327 5.327 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.377 5.377 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.373 3.627 16 O -0.407 6.407 17 C -0.120 4.120 18 C -0.370 4.370 19 S 0.507 5.493 20 C -0.266 4.266 21 C 0.093 3.907 22 H 0.122 0.878 23 C -0.185 4.185 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.284 6.284 27 N -0.143 5.143 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.209 0.791 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.881 -26.504 16.494 35.976 hybrid contribution 0.708 1.723 -0.373 1.900 sum -17.174 -24.781 16.121 34.190 Atomic orbital electron populations 1.22266 0.78408 1.03723 1.02424 1.47701 1.07836 1.05616 1.71555 1.21570 0.97553 0.83193 0.98125 1.22063 1.01150 0.98976 0.95591 1.20540 0.96026 0.91868 0.88706 1.42350 1.68327 1.25947 1.01120 1.19214 1.27779 0.98167 0.91789 0.91183 1.24763 1.01811 0.99095 0.95576 1.69659 1.51605 1.38961 0.98152 0.86235 0.79699 0.83264 0.76805 1.21264 1.21706 1.21295 1.17095 0.86232 0.82154 0.77192 1.90838 1.12630 1.86706 1.50554 1.20417 0.88105 0.95302 1.08172 1.26775 1.07416 0.96358 1.06464 1.82918 0.94208 1.10075 1.62129 1.26788 1.00926 0.92428 1.06433 1.21215 0.87140 0.93155 0.89191 0.87847 1.23028 1.00070 0.98958 0.96406 1.22966 0.99789 0.99948 0.96582 1.23477 0.86700 0.99656 0.93346 1.89185 1.40250 1.50762 1.48189 1.67208 1.10351 1.22064 1.14696 0.92868 0.91611 0.88103 0.90227 0.89617 0.91638 0.91899 0.96352 0.96169 0.78319 0.93511 0.79094 0.90243 0.89235 0.90187 0.89896 0.88375 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.47 59.85 0.57 1.43 16 2 N -0.60 -8.61 2.87 -182.90 -0.53 -9.14 16 3 C 0.12 1.79 5.40 -4.04 -0.02 1.77 16 4 C -0.14 -2.54 5.65 -26.73 -0.15 -2.70 16 5 C 0.16 3.41 6.26 -4.04 -0.03 3.38 16 6 N -0.73 -20.01 5.60 -59.91 -0.34 -20.34 16 7 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 10 N -0.93 -29.54 13.06 55.49 0.72 -28.82 16 11 Si 0.91 23.25 29.55 -169.99 -5.02 18.22 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.59 9.32 7.65 -12.59 -0.10 9.22 16 16 O -0.53 -9.99 16.29 5.26 0.09 -9.90 16 17 C 0.02 0.20 6.49 -84.52 -0.55 -0.35 16 18 C -0.23 -2.49 10.62 29.65 0.31 -2.18 16 19 S 0.25 2.04 22.69 -107.50 -2.44 -0.40 16 20 C 0.01 0.12 6.26 -13.62 -0.09 0.03 16 21 C 0.15 1.07 3.81 -27.10 -0.10 0.97 16 22 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 23 C -0.15 -0.68 6.62 -25.16 -0.17 -0.84 16 24 C -0.15 -0.49 7.09 -25.17 -0.18 -0.67 16 25 C 0.04 0.19 7.63 37.93 0.29 0.48 16 26 O -0.37 -2.79 11.13 -35.23 -0.39 -3.18 16 27 N -0.43 -4.81 6.76 -8.51 -0.06 -4.86 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 30 H 0.10 1.19 5.26 -51.93 -0.27 0.91 16 31 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.09 1.38 7.38 -51.93 -0.38 1.00 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.38 11.00 7.67 -40.82 -0.31 10.68 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.19 1.94 8.04 -52.48 -0.42 1.52 16 40 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -35.92 385.74 -9.44 -45.35 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.83 Total: 4.51 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.45 Total: 2.74 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.19 Total: -63.16 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.31 Total: -13.08 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.22 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.44 Total: -0.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.92 -9.44 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569202500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.939 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds