Wall clock time and date at job start Sat Apr 11 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46503 * 119.99738 * 2 1 4 4 C 1.52999 * 109.47142 * 270.00046 * 3 2 1 5 5 C 1.53001 * 109.46943 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.36938 * 120.00208 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00162 * 179.97438 * 7 6 5 10 10 N 1.31618 * 119.99965 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47184 * 60.00071 * 11 9 7 13 13 H 1.48502 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46841 * 300.00093 * 11 9 7 15 15 C 1.34772 * 120.00259 * 180.02562 * 2 1 3 16 16 O 1.21625 * 120.00298 * 182.82429 * 15 2 1 17 17 C 1.47275 * 119.99631 * 2.81680 * 15 2 1 18 18 C 1.35206 * 123.13769 * 173.21058 * 17 15 2 19 19 S 1.70941 * 108.82828 * 180.02562 * 18 17 15 20 20 C 1.70775 * 91.12654 * 0.02562 * 19 18 17 21 21 C 1.50697 * 124.71973 * 179.97438 * 20 19 18 22 22 H 1.09001 * 110.33119 * 197.28927 * 21 20 19 23 23 C 1.54487 * 110.37292 * 75.03865 * 21 20 19 24 24 C 1.54505 * 104.06252 * 217.19092 * 23 21 20 25 25 C 1.54479 * 104.06450 * 359.97438 * 24 23 21 26 26 O 1.44422 * 104.80377 * 23.97964 * 25 24 23 27 27 N 1.28643 * 110.56092 * 0.02562 * 20 19 18 28 28 H 1.08997 * 109.46846 * 264.01428 * 1 2 3 29 29 H 1.08999 * 109.46999 * 24.01779 * 1 2 3 30 30 H 1.08994 * 109.46946 * 144.01255 * 1 2 3 31 31 H 1.09001 * 109.46889 * 30.00002 * 3 2 1 32 32 H 1.08997 * 109.46865 * 149.99827 * 3 2 1 33 33 H 1.09001 * 109.47193 * 299.99771 * 4 3 2 34 34 H 1.08997 * 109.47419 * 60.00120 * 4 3 2 35 35 H 1.09006 * 109.47055 * 299.99758 * 5 4 3 36 36 H 1.08997 * 109.47339 * 59.99613 * 5 4 3 37 37 H 0.97002 * 120.00431 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00069 * 179.97438 * 10 9 7 39 39 H 1.08007 * 125.58889 * 0.05628 * 18 17 15 40 40 H 1.08997 * 110.51048 * 335.83406 * 23 21 20 41 41 H 1.08997 * 110.51193 * 98.40579 * 23 21 20 42 42 H 1.08992 * 110.51574 * 118.64270 * 24 23 21 43 43 H 1.09005 * 110.51444 * 241.22072 * 24 23 21 44 44 H 1.09001 * 110.37657 * 142.80874 * 25 24 23 45 45 H 1.09005 * 110.37461 * 265.03941 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4424 6 7 3.4627 3.4579 -2.8236 7 6 4.1359 4.6238 -3.0738 8 1 4.4868 5.2316 -2.2529 9 6 4.3682 5.0240 -4.3825 10 7 3.9410 4.2831 -5.3829 11 14 5.2872 6.6142 -4.7238 12 1 6.6441 6.5400 -4.1251 13 1 5.4031 6.8138 -6.1907 14 1 4.5443 7.7530 -4.1268 15 6 2.1390 -1.1671 -0.0005 16 8 3.3541 -1.1678 0.0514 17 6 1.4039 -2.4418 -0.0638 18 6 2.0137 -3.6406 -0.2018 19 16 0.8217 -4.8654 -0.2340 20 6 -0.4213 -3.7071 -0.0622 21 6 -1.8923 -4.0290 -0.0021 22 1 -2.4840 -3.1346 -0.1967 23 6 -2.2564 -4.6257 1.3756 24 6 -3.3143 -5.7037 1.0501 25 6 -3.4647 -5.6305 -0.4856 26 8 -2.2196 -5.0664 -0.9519 27 7 0.0726 -2.5213 0.0078 28 1 -0.3633 -0.1072 1.0221 29 1 -0.3633 0.9387 -0.4183 30 1 -0.3633 -0.8315 -0.6038 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 3.0416 0.9509 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6292 3.7951 -0.9285 36 1 4.1704 2.9045 -0.9287 37 1 3.1479 2.9119 -3.5609 38 1 4.1030 4.5629 -6.2974 39 1 3.0794 -3.7985 -0.2786 40 1 -1.3801 -5.0783 1.8394 41 1 -2.6775 -3.8582 2.0249 42 1 -2.9610 -6.6893 1.3529 43 1 -4.2600 -5.4710 1.5396 44 1 -3.6083 -6.6280 -0.9009 45 1 -4.3003 -4.9843 -0.7547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569202500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:30 Heat of formation + Delta-G solvation = -34.036066 kcal Electronic energy + Delta-G solvation = -26333.206039 eV Core-core repulsion = 22477.573210 eV Total energy + Delta-G solvation = -3855.632829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.87738 -40.56184 -39.63182 -37.61194 -36.45886 -34.09828 -33.28105 -32.61883 -31.62462 -29.76409 -28.07925 -27.58270 -26.17797 -24.92918 -23.75672 -22.69900 -22.36280 -21.64698 -20.61418 -19.45961 -19.16436 -17.83033 -17.45889 -17.23339 -16.96616 -16.80958 -16.52621 -16.20928 -15.99558 -15.49535 -15.38588 -15.14439 -14.90267 -14.68842 -14.46012 -14.07531 -13.97112 -13.64149 -13.39792 -13.27778 -12.90027 -12.76024 -12.73898 -12.69970 -12.69002 -12.46542 -12.22684 -12.11526 -11.86902 -11.83148 -11.61735 -11.31433 -10.96130 -10.95518 -10.71968 -10.59129 -10.04410 -9.68844 -9.05216 -7.97653 -5.28285 -0.62894 0.14518 0.54124 0.73633 1.45193 1.49979 1.56014 1.90912 2.15837 2.41076 2.54842 3.19818 3.35301 3.47836 3.64090 3.82278 3.88784 3.97491 4.02273 4.06079 4.18970 4.21807 4.34575 4.38970 4.40244 4.48221 4.52128 4.59377 4.69676 4.75207 4.78153 4.86171 4.88865 4.99505 5.07090 5.13987 5.18289 5.25795 5.27301 5.45716 5.51571 5.74545 6.15319 6.23885 6.33128 6.96303 7.29130 8.03932 8.27899 9.26129 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021766 B = 0.001925 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.113587 B =14538.854650 C =14805.176593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.596 5.596 3 C 0.126 3.874 4 C -0.121 4.121 5 C 0.156 3.844 6 N -0.750 5.750 7 C -0.251 4.251 8 H 0.079 0.921 9 C -0.081 4.081 10 N -0.973 5.973 11 Si 0.982 3.018 12 H -0.278 1.278 13 H -0.294 1.294 14 H -0.273 1.273 15 C 0.580 3.420 16 O -0.574 6.574 17 C -0.010 4.010 18 C -0.241 4.241 19 S 0.316 5.684 20 C 0.004 3.996 21 C 0.151 3.849 22 H 0.107 0.893 23 C -0.144 4.144 24 C -0.148 4.148 25 C 0.038 3.962 26 O -0.389 6.389 27 N -0.436 5.436 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.017 0.983 37 H 0.371 0.629 38 H 0.252 0.748 39 H 0.192 0.808 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.115 -26.541 18.047 37.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.326 5.326 3 C 0.003 3.997 4 C -0.160 4.160 5 C 0.029 3.971 6 N -0.392 5.392 7 C -0.382 4.382 8 H 0.097 0.903 9 C -0.272 4.272 10 N -0.623 5.623 11 Si 0.809 3.191 12 H -0.204 1.204 13 H -0.220 1.220 14 H -0.199 1.199 15 C 0.366 3.634 16 O -0.454 6.454 17 C -0.145 4.145 18 C -0.384 4.384 19 S 0.575 5.425 20 C -0.274 4.274 21 C 0.090 3.910 22 H 0.124 0.876 23 C -0.183 4.183 24 C -0.186 4.186 25 C -0.038 4.038 26 O -0.308 6.308 27 N -0.154 5.154 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.203 0.797 38 H 0.061 0.939 39 H 0.209 0.791 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.655 -27.061 17.920 37.944 hybrid contribution 1.168 1.751 -0.774 2.243 sum -18.487 -25.310 17.146 35.726 Atomic orbital electron populations 1.22403 0.76417 1.04237 1.03560 1.47810 1.09027 1.04975 1.70800 1.21435 0.98025 0.84460 0.95795 1.21860 1.00095 0.96397 0.97662 1.20692 0.96507 0.93792 0.86099 1.42605 1.68266 1.25457 1.02896 1.19669 1.27445 0.98847 0.92274 0.90320 1.25706 1.03246 1.02883 0.95409 1.69835 1.53225 1.40937 0.98314 0.85098 0.78528 0.79122 0.76317 1.20372 1.21966 1.19906 1.17568 0.86020 0.83394 0.76386 1.90795 1.14446 1.87493 1.52689 1.20153 0.89080 0.94555 1.10727 1.26993 1.08459 0.97134 1.05824 1.82674 0.91939 1.07731 1.60168 1.27299 1.02473 0.92380 1.05217 1.21358 0.85529 0.93544 0.90535 0.87583 1.23051 1.00537 0.99607 0.95064 1.22962 1.00095 0.99747 0.95773 1.23703 0.85674 1.00253 0.94198 1.89152 1.41792 1.50992 1.48892 1.67161 1.09354 1.23177 1.15660 0.91225 0.90558 0.88269 0.87130 0.90804 0.94468 0.91610 0.94610 0.96503 0.79725 0.93906 0.79060 0.90491 0.88195 0.89530 0.88238 0.87281 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 9.47 127.77 1.21 2.86 16 2 N -0.60 -17.16 2.87 -850.84 -2.44 -19.60 16 3 C 0.13 3.76 5.40 86.38 0.47 4.23 16 4 C -0.12 -4.49 5.65 30.59 0.17 -4.32 16 5 C 0.16 6.78 6.26 86.38 0.54 7.32 16 6 N -0.75 -41.48 5.60 -343.46 -1.92 -43.41 16 7 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 10 N -0.97 -62.44 13.06 21.65 0.28 -62.15 16 11 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 C 0.58 18.89 7.65 86.62 0.66 19.56 16 16 O -0.57 -22.67 16.29 -4.11 -0.07 -22.74 16 17 C -0.01 -0.26 6.49 40.56 0.26 0.00 16 18 C -0.24 -5.30 10.62 67.12 0.71 -4.59 16 19 S 0.32 4.78 22.69 -56.49 -1.28 3.50 16 20 C 0.00 0.08 6.26 88.57 0.55 0.63 16 21 C 0.15 1.86 3.81 30.35 0.12 1.98 16 22 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 23 C -0.14 -1.01 6.62 31.61 0.21 -0.80 16 24 C -0.15 -0.53 7.09 31.61 0.22 -0.31 16 25 C 0.04 0.24 7.63 72.48 0.55 0.79 16 26 O -0.39 -5.28 11.13 -148.98 -1.66 -6.94 16 27 N -0.44 -9.59 6.76 -180.83 -1.22 -10.81 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.49 8.03 -2.39 -0.02 1.47 16 30 H 0.10 2.26 5.26 -2.39 -0.01 2.25 16 31 H 0.11 2.63 8.07 -2.39 -0.02 2.61 16 32 H 0.07 2.41 7.38 -2.39 -0.02 2.39 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.37 21.92 7.67 -92.71 -0.71 21.21 16 38 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.19 4.04 8.04 -2.91 -0.02 4.02 16 40 H 0.08 0.58 7.86 -2.39 -0.02 0.56 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.10 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 Total: -1.00 -78.47 385.74 1.00 -77.47 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.29 Total: 25.85 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.99 Total: 8.94 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.31 Total: -135.97 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.72 Total: -29.68 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.28 Total: 3.50 kcal Total: -78.47 1.00 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569202500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.438 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds