Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46825 * 2 1 4 4 C 1.35532 * 125.67560 * 260.91874 * 3 2 1 5 5 C 1.35448 * 108.87077 * 180.02562 * 4 3 2 6 6 C 1.39831 * 107.86736 * 0.24013 * 5 4 3 7 7 C 1.37647 * 125.67971 * 80.94846 * 3 2 1 8 8 C 1.46674 * 126.23211 * 359.97438 * 7 3 2 9 9 O 1.21690 * 120.00492 * 5.12793 * 8 7 3 10 10 N 1.34777 * 119.99776 * 185.12721 * 8 7 3 11 11 C 1.46504 * 119.99976 * 185.17576 * 10 8 7 12 12 C 1.52999 * 109.47092 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47760 * 295.00321 * 12 11 10 14 14 C 1.53005 * 109.47182 * 174.99912 * 12 11 10 15 15 N 1.46508 * 109.46934 * 55.00455 * 12 11 10 16 16 C 1.34770 * 119.99695 * 204.99537 * 15 12 11 17 17 O 1.21279 * 120.00622 * 0.02562 * 16 15 12 18 18 C 1.50704 * 119.99725 * 179.97438 * 16 15 12 19 19 S 1.81001 * 109.47098 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99893 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00467 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00111 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99801 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47440 * 90.00061 * 24 22 20 26 26 H 1.48498 * 109.47135 * 209.99975 * 24 22 20 27 27 H 1.48502 * 109.47466 * 329.99835 * 24 22 20 28 28 H 1.09000 * 109.47212 * 299.99963 * 1 2 3 29 29 H 1.08997 * 109.47224 * 59.99826 * 1 2 3 30 30 H 1.09004 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47212 * 240.00037 * 2 1 3 32 32 H 1.08999 * 109.47337 * 119.99399 * 2 1 3 33 33 H 1.08007 * 125.56385 * 0.04644 * 4 3 2 34 34 H 1.08002 * 126.06518 * 179.97438 * 5 4 3 35 35 H 1.07994 * 126.45862 * 179.75781 * 6 5 4 36 36 H 0.97001 * 120.00346 * 5.17320 * 10 8 7 37 37 H 1.08995 * 109.47212 * 300.00499 * 11 10 8 38 38 H 1.09000 * 109.47054 * 60.00232 * 11 10 8 39 39 H 1.09002 * 109.47108 * 300.00809 * 14 12 11 40 40 H 1.09001 * 109.46861 * 60.00175 * 14 12 11 41 41 H 1.08999 * 109.47392 * 180.02562 * 14 12 11 42 42 H 0.96999 * 119.99823 * 24.99825 * 15 12 11 43 43 H 1.08997 * 109.47186 * 300.00332 * 18 16 15 44 44 H 1.08996 * 109.47142 * 60.00271 * 18 16 15 45 45 H 0.96997 * 119.99893 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4455 2.0686 -1.0872 5 6 2.8199 3.3115 -0.7004 6 6 2.6261 3.4075 0.6811 7 6 2.1200 2.1968 1.1042 8 6 1.7609 1.8408 2.4810 9 8 1.4152 0.7043 2.7452 10 7 1.8139 2.7723 3.4536 11 6 1.5657 2.3920 4.8464 12 6 1.6865 3.6269 5.7416 13 1 2.7135 3.9917 5.7209 14 6 1.3059 3.2560 7.1764 15 7 0.7862 4.6742 5.2528 16 6 1.0502 5.9685 5.5202 17 8 2.0333 6.2663 6.1651 18 6 0.1245 7.0459 5.0169 19 16 0.7454 8.6653 5.5348 20 6 -0.4911 9.7059 4.8328 21 1 -1.3114 9.2726 4.2799 22 6 -0.4110 11.0826 4.9904 23 7 0.5885 11.6108 5.6648 24 14 -1.7215 12.1858 4.2456 25 1 -2.8166 12.3866 5.2283 26 1 -1.1229 13.4992 3.8963 27 1 -2.2668 11.5488 3.0200 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.4813 1.6875 -2.0972 34 1 3.2044 4.0889 -1.3441 35 1 2.8316 4.2686 1.2996 36 1 2.0164 3.6945 3.2314 37 1 0.5629 1.9745 4.9359 38 1 2.2984 1.6465 5.1556 39 1 0.2789 2.8912 7.1971 40 1 1.9757 2.4767 7.5400 41 1 1.3915 4.1359 7.8140 42 1 0.0002 4.4361 4.7367 43 1 0.0782 7.0060 3.9287 44 1 -0.8725 6.8900 5.4290 45 1 0.6443 12.5728 5.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579621758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = -33.161102 kcal Electronic energy + Delta-G solvation = -26442.951141 eV Core-core repulsion = 22587.356253 eV Total energy + Delta-G solvation = -3855.594888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66350 -39.81048 -38.96498 -36.37318 -34.64733 -33.65862 -32.44113 -31.57134 -29.76137 -29.57037 -28.59098 -26.43903 -25.49446 -23.90300 -22.64066 -21.81989 -20.76080 -20.38742 -19.69574 -18.24128 -17.79128 -16.62358 -16.44699 -16.29839 -15.69362 -15.49586 -14.99830 -14.93116 -14.81394 -14.49495 -14.16128 -14.10524 -13.93914 -13.34160 -13.18232 -12.96663 -12.80853 -12.74588 -12.59316 -12.53386 -12.49397 -12.24043 -12.07112 -11.85274 -11.54523 -11.18110 -11.07383 -11.03449 -10.76889 -10.23890 -9.83102 -9.50596 -9.37021 -9.09277 -9.02188 -8.99036 -8.45334 -8.25864 -6.51730 -6.23056 -3.93657 1.23208 2.33828 2.51784 2.94325 3.00863 3.11437 3.18183 3.21738 3.27475 3.31321 3.67030 4.19230 4.36508 4.37631 4.53853 4.68667 4.72260 4.89881 4.93672 5.07033 5.10747 5.12315 5.13456 5.15396 5.31792 5.33358 5.44295 5.47087 5.53185 5.63545 5.75624 5.85308 5.85552 5.91134 5.97110 6.02935 6.11845 6.17896 6.51151 6.55220 6.75236 6.95961 7.23260 7.58391 7.62214 7.93245 8.33999 8.54113 9.22547 10.84339 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002499 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.238617 B =11201.949762 C =12782.995614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.015 3.985 5 C -0.206 4.206 6 C -0.136 4.136 7 C -0.056 4.056 8 C 0.591 3.409 9 O -0.551 6.551 10 N -0.718 5.718 11 C 0.117 3.883 12 C 0.132 3.868 13 H 0.096 0.904 14 C -0.161 4.161 15 N -0.738 5.738 16 C 0.534 3.466 17 O -0.514 6.514 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.167 0.833 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.408 0.592 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 -24.255 -10.755 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.023 4.023 3 N -0.082 5.082 4 C -0.121 4.121 5 C -0.230 4.230 6 C -0.163 4.163 7 C -0.169 4.169 8 C 0.379 3.621 9 O -0.431 6.431 10 N -0.370 5.370 11 C -0.007 4.007 12 C 0.026 3.974 13 H 0.114 0.886 14 C -0.220 4.220 15 N -0.393 5.393 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.185 0.815 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.902 -24.789 -9.359 26.656 hybrid contribution -2.275 0.765 -1.654 2.915 sum 0.627 -24.025 -11.013 26.436 Atomic orbital electron populations 1.22067 0.93998 1.03028 1.02960 1.22012 0.96051 0.79609 1.04668 1.44056 1.46528 1.11526 1.06059 1.22036 1.04675 0.93480 0.91869 1.20867 1.09422 0.97262 0.95449 1.21448 1.02935 0.95980 0.95898 1.19978 1.15572 0.93071 0.88327 1.16968 0.77005 0.84689 0.83421 1.90780 1.48544 1.20233 1.83543 1.45639 1.72340 1.12253 1.06760 1.21721 1.02748 0.96701 0.79553 1.21149 0.96254 0.86570 0.93408 0.88573 1.22114 1.01779 1.02608 0.95482 1.46158 1.29078 1.05776 1.58294 1.20334 0.86016 0.82535 0.79125 1.90711 1.28063 1.81922 1.38051 1.23543 1.01754 1.00932 1.04290 1.85387 1.35464 0.90673 1.71712 1.22862 1.11876 0.93552 1.40088 0.90942 1.24990 0.96351 0.97158 0.95069 1.70012 1.29594 1.12341 1.38331 0.86173 0.80694 0.79359 0.79311 1.20292 1.20748 1.19675 0.91436 0.92345 0.90760 0.89402 0.87892 0.81532 0.83880 0.83751 0.75612 0.90593 0.89908 0.92193 0.91504 0.90980 0.76705 0.89188 0.89238 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.16 37.16 0.38 -0.84 16 2 C 0.10 0.75 6.11 -4.04 -0.02 0.73 16 3 N -0.41 -3.93 2.76 -112.87 -0.31 -4.24 16 4 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 5 C -0.21 -1.93 10.81 -39.98 -0.43 -2.36 16 6 C -0.14 -1.41 10.35 -39.12 -0.40 -1.82 16 7 C -0.06 -0.62 6.88 -81.98 -0.56 -1.19 16 8 C 0.59 6.81 7.77 -12.85 -0.10 6.71 16 9 O -0.55 -7.39 14.23 5.20 0.07 -7.31 16 10 N -0.72 -6.98 5.36 -61.62 -0.33 -7.31 16 11 C 0.12 1.04 5.24 -4.04 -0.02 1.02 16 12 C 0.13 1.35 2.73 -67.92 -0.19 1.16 16 13 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 14 C -0.16 -1.57 9.48 37.16 0.35 -1.21 16 15 N -0.74 -8.71 4.52 -53.80 -0.24 -8.95 16 16 C 0.53 9.12 7.81 -10.99 -0.09 9.03 16 17 O -0.51 -10.80 15.52 5.56 0.09 -10.71 16 18 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.44 8.11 -51.93 -0.42 0.02 16 32 H 0.10 0.94 6.75 -51.93 -0.35 0.59 16 33 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.34 7.49 -52.49 -0.39 0.95 16 36 H 0.41 3.82 7.09 -40.82 -0.29 3.53 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.40 3.88 8.60 -40.82 -0.35 3.53 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -35.35 395.60 -8.91 -44.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.79 Total: 5.34 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.86 Total: -4.30 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.15 Total: -45.64 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.16 Total: -18.03 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.35 -8.91 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579621758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.098 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds