Wall clock time and date at job start Sat Apr 11 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46825 * 2 1 4 4 C 1.35532 * 125.67560 * 260.91874 * 3 2 1 5 5 C 1.35448 * 108.87077 * 180.02562 * 4 3 2 6 6 C 1.39831 * 107.86736 * 0.24013 * 5 4 3 7 7 C 1.37647 * 125.67971 * 80.94846 * 3 2 1 8 8 C 1.46674 * 126.23211 * 359.97438 * 7 3 2 9 9 O 1.21690 * 120.00492 * 5.12793 * 8 7 3 10 10 N 1.34777 * 119.99776 * 185.12721 * 8 7 3 11 11 C 1.46504 * 119.99976 * 185.17576 * 10 8 7 12 12 C 1.52999 * 109.47092 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.47760 * 295.00321 * 12 11 10 14 14 C 1.53005 * 109.47182 * 174.99912 * 12 11 10 15 15 N 1.46508 * 109.46934 * 55.00455 * 12 11 10 16 16 C 1.34770 * 119.99695 * 204.99537 * 15 12 11 17 17 O 1.21279 * 120.00622 * 0.02562 * 16 15 12 18 18 C 1.50704 * 119.99725 * 179.97438 * 16 15 12 19 19 S 1.81001 * 109.47098 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99893 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00467 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00111 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99801 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47440 * 90.00061 * 24 22 20 26 26 H 1.48498 * 109.47135 * 209.99975 * 24 22 20 27 27 H 1.48502 * 109.47466 * 329.99835 * 24 22 20 28 28 H 1.09000 * 109.47212 * 299.99963 * 1 2 3 29 29 H 1.08997 * 109.47224 * 59.99826 * 1 2 3 30 30 H 1.09004 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47212 * 240.00037 * 2 1 3 32 32 H 1.08999 * 109.47337 * 119.99399 * 2 1 3 33 33 H 1.08007 * 125.56385 * 0.04644 * 4 3 2 34 34 H 1.08002 * 126.06518 * 179.97438 * 5 4 3 35 35 H 1.07994 * 126.45862 * 179.75781 * 6 5 4 36 36 H 0.97001 * 120.00346 * 5.17320 * 10 8 7 37 37 H 1.08995 * 109.47212 * 300.00499 * 11 10 8 38 38 H 1.09000 * 109.47054 * 60.00232 * 11 10 8 39 39 H 1.09002 * 109.47108 * 300.00809 * 14 12 11 40 40 H 1.09001 * 109.46861 * 60.00175 * 14 12 11 41 41 H 1.08999 * 109.47392 * 180.02562 * 14 12 11 42 42 H 0.96999 * 119.99823 * 24.99825 * 15 12 11 43 43 H 1.08997 * 109.47186 * 300.00332 * 18 16 15 44 44 H 1.08996 * 109.47142 * 60.00271 * 18 16 15 45 45 H 0.96997 * 119.99893 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4455 2.0686 -1.0872 5 6 2.8199 3.3115 -0.7004 6 6 2.6261 3.4075 0.6811 7 6 2.1200 2.1968 1.1042 8 6 1.7609 1.8408 2.4810 9 8 1.4152 0.7043 2.7452 10 7 1.8139 2.7723 3.4536 11 6 1.5657 2.3920 4.8464 12 6 1.6865 3.6269 5.7416 13 1 2.7135 3.9917 5.7209 14 6 1.3059 3.2560 7.1764 15 7 0.7862 4.6742 5.2528 16 6 1.0502 5.9685 5.5202 17 8 2.0333 6.2663 6.1651 18 6 0.1245 7.0459 5.0169 19 16 0.7454 8.6653 5.5348 20 6 -0.4911 9.7059 4.8328 21 1 -1.3114 9.2726 4.2799 22 6 -0.4110 11.0826 4.9904 23 7 0.5885 11.6108 5.6648 24 14 -1.7215 12.1858 4.2456 25 1 -2.8166 12.3866 5.2283 26 1 -1.1229 13.4992 3.8963 27 1 -2.2668 11.5488 3.0200 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 2.4813 1.6875 -2.0972 34 1 3.2044 4.0889 -1.3441 35 1 2.8316 4.2686 1.2996 36 1 2.0164 3.6945 3.2314 37 1 0.5629 1.9745 4.9359 38 1 2.2984 1.6465 5.1556 39 1 0.2789 2.8912 7.1971 40 1 1.9757 2.4767 7.5400 41 1 1.3915 4.1359 7.8140 42 1 0.0002 4.4361 4.7367 43 1 0.0782 7.0060 3.9287 44 1 -0.8725 6.8900 5.4290 45 1 0.6443 12.5728 5.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579621758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:53 Heat of formation + Delta-G solvation = -57.395475 kcal Electronic energy + Delta-G solvation = -26444.002022 eV Core-core repulsion = 22587.356253 eV Total energy + Delta-G solvation = -3856.645769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.37574 -40.94206 -39.99071 -37.43566 -35.38976 -34.58440 -34.53402 -32.72356 -30.57738 -30.22667 -29.92524 -27.64163 -27.22271 -24.52891 -23.46448 -22.80093 -21.61978 -21.44590 -20.50297 -19.83131 -18.87861 -17.94902 -17.47127 -17.16761 -16.86526 -16.54120 -16.42701 -16.31188 -15.94853 -15.62892 -15.13288 -14.96745 -14.73881 -14.65320 -14.53898 -14.05368 -13.96184 -13.63921 -13.47104 -13.27331 -13.20515 -13.14613 -13.10943 -12.96498 -12.88348 -12.83277 -12.57829 -12.14791 -12.05956 -11.70882 -11.13149 -11.11705 -10.93307 -10.25918 -10.24856 -10.18000 -9.70007 -9.16882 -8.63886 -8.33498 -6.10515 0.45905 1.28161 1.42946 1.47778 1.57768 1.61390 1.66612 1.82020 2.21176 2.29133 2.34206 2.41128 3.00793 3.33465 3.53828 3.76010 3.81899 3.98904 4.05497 4.11066 4.16227 4.24464 4.34475 4.38173 4.43454 4.47671 4.53751 4.56939 4.67888 4.74783 4.77753 4.86216 5.00132 5.14287 5.16460 5.22522 5.28810 5.35937 5.43474 5.47506 5.80206 6.02667 6.21179 6.33098 6.41521 6.47753 7.08298 7.09180 7.24338 8.75527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002499 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.238617 B =11201.949762 C =12782.995614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.095 3.905 3 N -0.413 5.413 4 C 0.026 3.974 5 C -0.226 4.226 6 C -0.145 4.145 7 C -0.085 4.085 8 C 0.589 3.411 9 O -0.575 6.575 10 N -0.713 5.713 11 C 0.126 3.874 12 C 0.137 3.863 13 H 0.081 0.919 14 C -0.157 4.157 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.203 0.797 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.409 0.591 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.413 0.587 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 -25.880 -12.838 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.025 4.025 3 N -0.087 5.087 4 C -0.110 4.110 5 C -0.249 4.249 6 C -0.172 4.172 7 C -0.198 4.198 8 C 0.378 3.622 9 O -0.456 6.456 10 N -0.365 5.365 11 C 0.003 3.997 12 C 0.032 3.968 13 H 0.099 0.901 14 C -0.216 4.216 15 N -0.366 5.366 16 C 0.326 3.674 17 O -0.435 6.435 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.219 0.781 34 H 0.174 0.826 35 H 0.164 0.836 36 H 0.246 0.754 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.250 0.750 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.438 -26.460 -11.447 28.865 hybrid contribution -1.796 1.126 -1.044 2.363 sum -0.358 -25.334 -12.491 28.248 Atomic orbital electron populations 1.22010 0.93883 1.03750 1.01750 1.22140 0.96107 0.78879 1.05397 1.44295 1.46319 1.12073 1.05973 1.22633 1.02510 0.92949 0.92880 1.21165 1.10144 0.98379 0.95201 1.21644 1.02833 0.95978 0.96754 1.20039 1.17192 0.93890 0.88635 1.17110 0.76687 0.84478 0.83921 1.90761 1.49858 1.21080 1.83951 1.45622 1.71880 1.12117 1.06864 1.21679 1.03554 0.95777 0.78739 1.21210 0.95010 0.86248 0.94332 0.90051 1.22074 1.03342 1.02036 0.94124 1.45880 1.29432 1.04269 1.57046 1.19963 0.85024 0.83680 0.78766 1.90706 1.29791 1.82760 1.40277 1.23390 1.02478 0.97013 1.05438 1.85538 1.37329 0.96143 1.72924 1.23200 1.11983 0.94186 1.39988 0.90049 1.26096 0.98745 0.98888 0.95376 1.70174 1.31854 1.12763 1.39931 0.84985 0.77449 0.76965 0.78793 1.19434 1.20334 1.18217 0.94289 0.91721 0.89119 0.86172 0.89635 0.78051 0.82580 0.83566 0.75432 0.89696 0.89012 0.90704 0.89319 0.93810 0.74976 0.87205 0.87527 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.16 71.98 0.73 -1.38 16 2 C 0.09 1.31 6.11 86.38 0.53 1.84 16 3 N -0.41 -7.33 2.76 -511.01 -1.41 -8.74 16 4 C 0.03 0.38 11.36 83.48 0.95 1.32 16 5 C -0.23 -3.88 10.81 22.01 0.24 -3.64 16 6 C -0.15 -2.93 10.35 22.57 0.23 -2.69 16 7 C -0.08 -1.82 6.88 40.35 0.28 -1.54 16 8 C 0.59 13.29 7.77 86.45 0.67 13.96 16 9 O -0.57 -15.17 14.23 -4.32 -0.06 -15.23 16 10 N -0.71 -13.26 5.36 -467.08 -2.50 -15.77 16 11 C 0.13 2.05 5.24 86.38 0.45 2.50 16 12 C 0.14 2.65 2.73 44.99 0.12 2.78 16 13 H 0.08 1.91 7.58 -2.39 -0.02 1.89 16 14 C -0.16 -2.85 9.48 71.98 0.68 -2.16 16 15 N -0.71 -15.90 4.52 -442.52 -2.00 -17.90 16 16 C 0.54 18.31 7.81 87.66 0.68 18.99 16 17 O -0.56 -24.03 15.52 -3.03 -0.05 -24.08 16 18 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 19 S -0.15 -7.93 20.57 -56.49 -1.16 -9.09 16 20 C -0.55 -30.73 9.50 67.96 0.65 -30.08 16 21 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.48 13.22 21.65 0.29 -55.19 16 24 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 H 0.04 0.75 7.56 -2.39 -0.02 0.73 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.84 8.11 -2.39 -0.02 0.82 16 32 H 0.09 1.50 6.75 -2.39 -0.02 1.49 16 33 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.71 7.49 -2.91 -0.02 2.68 16 36 H 0.41 7.40 7.09 -92.71 -0.66 6.74 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.41 7.13 8.60 -92.71 -0.80 6.33 16 43 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 44 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -79.46 395.60 1.81 -77.65 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: -0.44 Total: 26.47 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 7.12 Total: -3.41 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -5.63 Total: -97.60 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.11 Total: -39.31 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -79.46 1.81 -77.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579621758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.257 kcal (2) G-P(sol) polarization free energy of solvation -79.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds