Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.46942 * 2 1 4 4 C 1.42902 * 113.99868 * 180.02562 * 3 2 1 5 5 H 1.09007 * 110.91570 * 26.09265 * 4 3 2 6 6 C 1.54904 * 111.00268 * 262.19592 * 4 3 2 7 7 N 1.47426 * 104.83493 * 204.91525 * 6 4 3 8 8 C 1.34775 * 125.65211 * 204.09734 * 7 6 4 9 9 O 1.21283 * 120.00331 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99907 * 0.03453 * 8 7 6 11 11 C 1.50699 * 109.47166 * 180.02562 * 10 8 7 12 12 C 1.33641 * 126.03960 * 89.71392 * 11 10 8 13 13 N 1.31779 * 114.49924 * 179.78828 * 12 11 10 14 14 C 1.29025 * 117.12551 * 0.52628 * 13 12 11 15 15 S 1.70973 * 110.16831 * 359.71004 * 14 13 12 16 16 C 1.47022 * 108.70100 * 24.12724 * 7 6 4 17 17 C 1.54325 * 107.26994 * 358.93837 * 16 7 6 18 18 H 1.09004 * 110.71476 * 96.34847 * 17 16 7 19 19 C 1.53001 * 110.72324 * 219.43918 * 17 16 7 20 20 N 1.46496 * 109.47205 * 293.55471 * 19 17 16 21 21 C 1.36945 * 119.99718 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09005 * 109.47129 * 60.00015 * 1 2 3 30 30 H 1.09005 * 109.47561 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47116 * 300.00346 * 1 2 3 32 32 H 1.09002 * 109.46472 * 239.99842 * 2 1 3 33 33 H 1.08999 * 109.46697 * 119.99902 * 2 1 3 34 34 H 1.09003 * 110.37086 * 86.07481 * 6 4 3 35 35 H 1.09004 * 110.46386 * 323.80050 * 6 4 3 36 36 H 1.09004 * 109.47030 * 300.00227 * 10 8 7 37 37 H 1.09005 * 109.47057 * 60.00411 * 10 8 7 38 38 H 1.08004 * 122.74263 * 359.97438 * 12 11 10 39 39 H 1.07999 * 124.91395 * 179.75188 * 14 13 12 40 40 H 1.09004 * 109.87899 * 239.52795 * 16 7 6 41 41 H 1.08990 * 109.88188 * 118.36242 * 16 7 6 42 42 H 1.08997 * 109.46922 * 173.54513 * 19 17 16 43 43 H 1.09000 * 109.46483 * 53.55332 * 19 17 16 44 44 H 0.96996 * 120.00499 * 359.97438 * 20 19 17 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8908 0.5793 -0.4488 6 6 3.9694 1.6995 1.4320 7 7 5.2613 2.3834 1.2402 8 6 6.2849 2.3891 2.1168 9 8 7.3058 2.9885 1.8533 10 6 6.1611 1.6504 3.4246 11 6 7.4330 1.8136 4.2161 12 6 7.6959 2.7907 5.0891 13 7 8.8817 2.7105 5.6584 14 6 9.6378 1.7261 5.3064 15 16 8.8393 0.7542 4.1483 16 6 5.2477 3.0589 -0.0656 17 6 3.8860 2.7545 -0.7248 18 1 3.1814 3.5670 -0.5473 19 6 4.0544 2.5049 -2.2249 20 7 4.4844 3.7424 -2.8806 21 6 4.7012 3.7612 -4.2326 22 1 4.5557 2.8636 -4.8154 23 6 5.1081 4.9338 -4.8540 24 7 5.2860 6.0276 -4.1437 25 14 5.4046 4.9593 -6.6982 26 1 5.8282 6.3209 -7.1127 27 1 6.4695 3.9830 -7.0418 28 1 4.1513 4.5944 -7.4061 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1158 0.7495 1.9460 35 1 3.2847 2.3333 1.9956 36 1 5.3248 2.0566 3.9936 37 1 5.9877 0.5921 3.2291 38 1 6.9927 3.5796 5.3121 39 1 10.6311 1.5422 5.6885 40 1 6.0554 2.6760 -0.6894 41 1 5.3608 4.1342 0.0721 42 1 3.1038 2.1806 -2.6482 43 1 4.8052 1.7305 -2.3823 44 1 4.6155 4.5484 -2.3572 45 1 5.5707 6.8469 -4.5779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656477524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = -42.060008 kcal Electronic energy + Delta-G solvation = -26855.525501 eV Core-core repulsion = 22999.544727 eV Total energy + Delta-G solvation = -3855.980773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45667 -40.53252 -39.53166 -37.73663 -36.45355 -34.21519 -33.60097 -32.40841 -31.22486 -29.43170 -28.94851 -27.08254 -25.67110 -24.81118 -23.82241 -23.11414 -21.67547 -21.14329 -20.44519 -19.23831 -18.99859 -18.44410 -17.88730 -17.08697 -16.73123 -16.67910 -16.40487 -16.03807 -15.65704 -15.45546 -15.27352 -15.06766 -14.87051 -14.74044 -14.45391 -14.15116 -13.92025 -13.85670 -13.49200 -13.30918 -13.19659 -13.10265 -12.79538 -12.70861 -12.41457 -12.24476 -12.20772 -12.16879 -11.95181 -11.74932 -11.60233 -11.18652 -10.95635 -10.64310 -10.47283 -10.21600 -9.87798 -9.77660 -9.03446 -7.96387 -5.26298 -0.28232 0.43634 0.78619 1.45664 1.49303 1.51750 1.55400 1.69591 1.97572 2.53674 2.69250 3.29365 3.37536 3.40538 3.44696 3.65528 3.83348 3.86180 4.05102 4.08051 4.17163 4.29238 4.31751 4.37149 4.39829 4.48386 4.50220 4.59672 4.63739 4.71169 4.77441 4.78508 4.83779 4.96853 5.04219 5.10054 5.14143 5.17435 5.24752 5.37972 5.47003 6.24649 6.31139 6.41393 6.73150 7.04255 7.31182 8.05496 8.28395 9.26941 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.002916 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.254319 B = 9600.689572 C =12159.902732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.385 6.385 4 C 0.095 3.905 5 H 0.094 0.906 6 C 0.084 3.916 7 N -0.612 5.612 8 C 0.521 3.479 9 O -0.581 6.581 10 C -0.048 4.048 11 C -0.214 4.214 12 C 0.027 3.973 13 N -0.505 5.505 14 C 0.013 3.987 15 S 0.151 5.849 16 C 0.127 3.873 17 C -0.093 4.093 18 H 0.084 0.916 19 C 0.167 3.833 20 N -0.746 5.746 21 C -0.247 4.247 22 H 0.078 0.922 23 C -0.076 4.076 24 N -0.970 5.970 25 Si 0.975 3.025 26 H -0.296 1.296 27 H -0.278 1.278 28 H -0.275 1.275 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.181 0.819 39 H 0.227 0.773 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.373 0.627 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -19.451 21.371 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.304 6.304 4 C 0.035 3.965 5 H 0.112 0.888 6 C -0.038 4.038 7 N -0.346 5.346 8 C 0.311 3.689 9 O -0.460 6.460 10 C -0.089 4.089 11 C -0.335 4.335 12 C -0.124 4.124 13 N -0.219 5.219 14 C -0.283 4.283 15 S 0.404 5.596 16 C 0.004 3.996 17 C -0.113 4.113 18 H 0.102 0.898 19 C 0.041 3.959 20 N -0.388 5.388 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.268 4.268 24 N -0.621 5.621 25 Si 0.804 3.196 26 H -0.223 1.223 27 H -0.204 1.204 28 H -0.201 1.201 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.198 0.802 39 H 0.243 0.757 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.205 0.795 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.680 -19.597 21.003 28.850 hybrid contribution 0.089 1.685 -1.039 1.981 sum -2.591 -17.912 19.964 26.947 Atomic orbital electron populations 1.21772 0.93223 1.03315 1.02527 1.22813 0.96150 0.82520 1.01468 1.87963 1.19178 1.28488 1.94774 1.23067 0.82092 0.97043 0.94275 0.88814 1.22982 0.83570 0.99525 0.97750 1.48436 1.16109 1.52093 1.18006 1.20939 0.81368 0.80900 0.85694 1.90758 1.30740 1.46266 1.78250 1.20131 0.94744 1.03879 0.90193 1.25555 1.01449 1.01571 1.04971 1.21939 0.94290 0.99615 0.96514 1.66324 1.05156 1.22569 1.27805 1.28899 1.05381 0.94553 0.99476 1.83862 1.07817 1.28581 1.39320 1.21665 0.97338 0.96760 0.83842 1.22354 0.95120 0.99253 0.94556 0.89784 1.20728 0.96700 0.88636 0.89848 1.42558 1.81849 1.09077 1.05351 1.19597 1.36997 0.95818 0.85489 0.90441 1.25611 1.03053 0.95615 1.02553 1.69824 1.54912 1.00981 1.36351 0.85190 0.78202 0.76251 0.79998 1.22255 1.20359 1.20081 0.93364 0.89039 0.91751 0.93063 0.90631 0.85963 0.88850 0.83424 0.84223 0.80242 0.75658 0.93014 0.93498 0.95418 0.95875 0.79515 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.68 6.49 71.98 0.47 1.14 16 3 O -0.39 -8.33 10.15 -148.98 -1.51 -9.84 16 4 C 0.09 2.02 2.99 31.98 0.10 2.12 16 5 H 0.09 1.80 7.74 -2.38 -0.02 1.78 16 6 C 0.08 1.35 6.43 86.85 0.56 1.90 16 7 N -0.61 -15.19 3.33 -811.79 -2.70 -17.89 16 8 C 0.52 13.55 7.84 87.66 0.69 14.24 16 9 O -0.58 -21.72 16.36 -3.04 -0.05 -21.77 16 10 C -0.05 -0.70 5.24 29.10 0.15 -0.55 16 11 C -0.21 -4.17 5.09 24.64 0.13 -4.05 16 12 C 0.03 0.61 11.25 83.66 0.94 1.55 16 13 N -0.50 -11.93 10.54 -203.75 -2.15 -14.08 16 14 C 0.01 0.24 12.23 130.65 1.60 1.84 16 15 S 0.15 2.61 23.22 -56.49 -1.31 1.29 16 16 C 0.13 4.28 6.15 86.73 0.53 4.81 16 17 C -0.09 -2.93 2.75 -9.61 -0.03 -2.96 16 18 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 19 C 0.17 6.62 5.58 86.38 0.48 7.10 16 20 N -0.75 -38.66 5.45 -343.47 -1.87 -40.53 16 21 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 23 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 24 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 25 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 29 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 0.92 7.48 -2.39 -0.02 0.90 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.14 1.12 7.85 -2.38 -0.02 1.10 16 38 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.23 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.05 2.01 7.77 -2.38 -0.02 2.00 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 0.91 8.06 -2.39 -0.02 0.89 16 44 H 0.37 20.78 7.52 -92.71 -0.70 20.09 16 45 H 0.25 15.38 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -81.12 390.87 0.67 -80.45 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.30 Total: 25.52 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 7.66 Total: 8.66 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -6.44 Total: -133.33 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.56 Total: -31.61 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.29 kcal Total: -81.12 0.67 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656477524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -81.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds