Wall clock time and date at job start Sat Apr 11 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 116.99816 * 2 1 4 4 C 1.39361 * 120.35908 * 359.97438 * 3 2 1 5 5 N 1.31289 * 120.87622 * 179.76041 * 4 3 2 6 6 C 1.32889 * 121.72269 * 0.52254 * 5 4 3 7 7 C 1.47757 * 119.68877 * 179.74988 * 6 5 4 8 8 O 1.21565 * 119.99640 * 179.72588 * 7 6 5 9 9 N 1.34774 * 120.00012 * 359.73180 * 7 6 5 10 10 C 1.46499 * 120.00304 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47569 * 179.97438 * 10 9 7 12 12 O 1.42901 * 110.63884 * 66.68384 * 11 10 9 13 13 C 1.55155 * 110.72295 * 190.02012 * 11 10 9 14 14 C 1.54906 * 101.58029 * 153.86429 * 13 11 10 15 15 N 1.47424 * 104.83363 * 322.99120 * 14 13 11 16 16 C 1.36938 * 125.64839 * 204.16569 * 15 14 13 17 17 H 1.08002 * 120.00098 * 161.48575 * 16 15 14 18 18 C 1.38821 * 119.99952 * 341.48181 * 16 15 14 19 19 N 1.31612 * 119.99956 * 157.63257 * 18 16 15 20 20 Si 1.86798 * 119.99771 * 337.63039 * 18 16 15 21 21 H 1.48503 * 109.46832 * 84.53897 * 20 18 16 22 22 H 1.48503 * 109.47191 * 204.53340 * 20 18 16 23 23 H 1.48499 * 109.47509 * 324.53789 * 20 18 16 24 24 C 1.47015 * 108.70360 * 24.13166 * 15 14 13 25 25 C 1.39718 * 120.62307 * 359.47957 * 6 5 4 26 26 F 1.35098 * 120.46584 * 180.23381 * 25 6 5 27 27 C 1.38697 * 119.06804 * 0.24724 * 25 6 5 28 28 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47287 * 299.99572 * 1 2 3 30 30 H 1.09004 * 109.47288 * 59.99817 * 1 2 3 31 31 H 1.07999 * 119.55508 * 359.97438 * 4 3 2 32 32 H 0.97001 * 120.00294 * 0.26985 * 9 7 6 33 33 H 1.09007 * 109.46724 * 300.00094 * 10 9 7 34 34 H 1.08997 * 109.47132 * 59.99207 * 10 9 7 35 35 H 0.96697 * 114.00143 * 300.70343 * 12 11 10 36 36 H 1.08999 * 111.00843 * 271.94380 * 13 11 10 37 37 H 1.09006 * 110.99982 * 35.79371 * 13 11 10 38 38 H 1.09007 * 110.36756 * 204.15533 * 14 13 11 39 39 H 1.08996 * 110.36798 * 81.83310 * 14 13 11 40 40 H 0.96998 * 120.00370 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.88374 * 239.52387 * 24 15 14 42 42 H 1.08994 * 109.88393 * 118.35233 * 24 15 14 43 43 H 1.08001 * 120.78523 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2934 2.3828 -0.0005 5 7 1.8788 3.5580 0.0042 6 6 3.2021 3.6794 -0.0007 7 6 3.8136 5.0245 -0.0007 8 8 5.0236 5.1421 -0.0001 9 7 3.0299 6.1210 -0.0012 10 6 3.6361 7.4547 -0.0017 11 6 2.5341 8.5159 -0.0029 12 8 1.8035 8.4848 1.2249 13 6 3.1299 9.9259 -0.2559 14 6 1.9218 10.6663 -0.8820 15 7 1.2528 9.6551 -1.7206 16 6 0.4523 9.9168 -2.8004 17 1 0.2505 9.1406 -3.5237 18 6 -0.1000 11.1797 -2.9652 19 7 -0.4833 11.5796 -4.1590 20 14 -0.2992 12.3114 -1.4924 21 1 0.9711 13.0430 -1.2551 22 1 -1.3884 13.2847 -1.7598 23 1 -0.6385 11.5062 -0.2917 24 6 1.5880 8.3193 -1.2062 25 6 4.0208 2.5472 -0.0002 26 9 5.3657 2.6743 -0.0004 27 6 3.4332 1.2908 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2150 2.3247 -0.0014 32 1 2.0645 6.0272 0.0024 33 1 4.2542 7.5732 0.8883 34 1 4.2544 7.5724 -0.8916 35 1 1.3791 7.6356 1.4086 36 1 3.4339 10.3954 0.6796 37 1 3.9641 9.8776 -0.9560 38 1 2.2640 11.5008 -1.4942 39 1 1.2471 11.0188 -0.1018 40 1 -0.8695 12.4619 -4.2742 41 1 2.0893 7.7389 -1.9807 42 1 0.6810 7.8075 -0.8849 43 1 4.0394 0.3970 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672003528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:37 Heat of formation + Delta-G solvation = -118.207768 kcal Electronic energy + Delta-G solvation = -29420.541691 eV Core-core repulsion = 24995.045727 eV Total energy + Delta-G solvation = -4425.495964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.19342 -42.00064 -41.05599 -40.06053 -38.97136 -36.96800 -35.47231 -34.24829 -33.55113 -32.13619 -31.52832 -30.01378 -28.56156 -27.75834 -25.97263 -25.01523 -24.04609 -22.94336 -21.95267 -21.38594 -19.84745 -19.51680 -19.00432 -18.93991 -17.76426 -17.45734 -17.37777 -17.18119 -16.96499 -16.67307 -16.36444 -16.14608 -15.95060 -15.68598 -15.55696 -15.27999 -14.96747 -14.52995 -14.43477 -14.34836 -14.05675 -13.91390 -13.82583 -13.45693 -13.30920 -12.94650 -12.94119 -12.75451 -12.52295 -12.19687 -12.04642 -11.87687 -11.56729 -11.39040 -11.06915 -10.87155 -10.82900 -10.75800 -10.31399 -9.72185 -9.08520 -8.19738 -5.46561 -0.68425 -0.22666 1.30437 1.39127 1.48676 1.48825 1.75753 1.93683 2.40408 2.47247 2.85812 2.93080 2.96585 3.14009 3.17697 3.31789 3.47047 3.60356 3.71490 3.72417 3.74990 3.99356 4.33072 4.34814 4.38823 4.39725 4.42526 4.60589 4.68512 4.71829 4.75878 4.81999 4.83948 4.93329 5.02603 5.11201 5.15641 5.21361 5.64199 5.94771 6.07975 6.17046 6.45495 6.70733 6.72986 6.97379 7.51145 8.07277 8.99921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015550 B = 0.002705 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.225410 B =10350.499823 C =11403.652610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.148 3.852 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.019 4.019 7 C 0.572 3.428 8 O -0.560 6.560 9 N -0.699 5.699 10 C 0.114 3.886 11 C 0.124 3.876 12 O -0.552 6.552 13 C -0.107 4.107 14 C 0.105 3.895 15 N -0.624 5.624 16 C -0.236 4.236 17 H 0.061 0.939 18 C -0.033 4.033 19 N -0.954 5.954 20 Si 0.945 3.055 21 H -0.269 1.269 22 H -0.307 1.307 23 H -0.273 1.273 24 C 0.110 3.890 25 C 0.142 3.858 26 F -0.114 7.114 27 C -0.159 4.159 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.208 0.792 32 H 0.416 0.584 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.387 0.613 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -25.699 13.630 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.217 6.217 3 C 0.098 3.902 4 C -0.146 4.146 5 N -0.112 5.112 6 C -0.156 4.156 7 C 0.358 3.642 8 O -0.439 6.439 9 N -0.351 5.351 10 C -0.010 4.010 11 C 0.082 3.918 12 O -0.360 6.360 13 C -0.145 4.145 14 C -0.020 4.020 15 N -0.351 5.351 16 C -0.364 4.364 17 H 0.079 0.921 18 C -0.228 4.228 19 N -0.601 5.601 20 Si 0.774 3.226 21 H -0.195 1.195 22 H -0.236 1.236 23 H -0.199 1.199 24 C -0.015 4.015 25 C 0.119 3.881 26 F -0.092 7.092 27 C -0.185 4.185 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.225 0.775 32 H 0.254 0.746 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.237 0.763 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.497 -24.284 13.515 28.153 hybrid contribution -0.572 -0.386 0.001 0.690 sum 3.925 -24.670 13.516 28.402 Atomic orbital electron populations 1.23685 0.74575 1.06965 1.03607 1.86098 1.24790 1.24417 1.86350 1.20048 0.91787 0.86810 0.91598 1.23658 1.02712 0.85541 1.02640 1.67460 1.08347 1.28383 1.06982 1.20916 0.90353 0.93020 1.11310 1.17787 0.85916 0.84016 0.76517 1.90839 1.14593 1.86926 1.51497 1.45663 1.11182 1.04905 1.73383 1.21948 0.95309 0.79789 1.03907 1.22200 0.90227 0.95551 0.83798 1.86555 1.70339 1.40400 1.38659 1.22750 0.96966 0.92530 1.02243 1.22043 0.93467 0.93327 0.93126 1.44789 1.55437 1.02129 1.32697 1.18578 1.22592 0.97606 0.97634 0.92088 1.25588 0.99759 0.98831 0.98635 1.69955 1.47441 1.20352 1.22363 0.85966 0.77243 0.78540 0.80818 1.19506 1.23579 1.19870 1.22181 0.96988 0.87598 0.94702 1.18408 0.78099 0.93622 0.98004 1.91607 1.28410 1.96573 1.92627 1.21010 0.93731 0.97307 1.06481 0.85412 0.90181 0.90521 0.77543 0.74622 0.89206 0.90260 0.76289 0.87765 0.87965 0.93687 0.95883 0.92784 0.94083 0.94077 0.79971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.77 10.50 -90.49 -0.95 -3.72 16 3 C 0.15 1.82 6.72 22.73 0.15 1.97 16 4 C 0.02 0.23 10.21 85.04 0.87 1.10 16 5 N -0.40 -7.63 9.52 -184.39 -1.76 -9.38 16 6 C -0.02 -0.44 6.75 41.86 0.28 -0.15 16 7 C 0.57 16.02 7.80 86.76 0.68 16.69 16 8 O -0.56 -19.22 15.30 -3.92 -0.06 -19.28 16 9 N -0.70 -17.21 5.12 -466.06 -2.39 -19.60 16 10 C 0.11 2.95 4.80 86.38 0.41 3.37 16 11 C 0.12 3.66 0.93 -9.61 -0.01 3.65 16 12 O -0.55 -15.50 13.10 -148.98 -1.95 -17.45 16 13 C -0.11 -3.36 6.26 31.98 0.20 -3.16 16 14 C 0.10 4.49 4.69 86.85 0.41 4.90 16 15 N -0.62 -29.99 3.21 -692.00 -2.22 -32.21 16 16 C -0.24 -13.67 10.57 84.04 0.89 -12.78 16 17 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 18 C -0.03 -1.99 5.43 84.87 0.46 -1.53 16 19 N -0.95 -60.67 13.97 21.65 0.30 -60.37 16 20 Si 0.95 47.89 24.27 68.60 1.66 49.55 16 21 H -0.27 -12.81 6.49 99.48 0.65 -12.17 16 22 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 23 H -0.27 -13.62 6.66 99.48 0.66 -12.96 16 24 C 0.11 4.11 5.77 86.73 0.50 4.61 16 25 C 0.14 3.08 7.31 22.74 0.17 3.25 16 26 F -0.11 -2.97 15.54 44.97 0.70 -2.28 16 27 C -0.16 -2.38 10.10 22.57 0.23 -2.15 16 28 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.08 -0.07 7.67 -2.39 -0.02 -0.09 16 30 H 0.08 0.00 7.67 -2.38 -0.02 -0.02 16 31 H 0.21 1.07 6.31 -2.91 -0.02 1.05 16 32 H 0.42 9.11 6.79 -92.71 -0.63 8.48 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.08 2.17 8.03 -2.39 -0.02 2.15 16 35 H 0.39 7.95 8.43 -74.06 -0.62 7.33 16 36 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 37 H 0.10 2.92 7.96 -2.38 -0.02 2.90 16 38 H 0.04 2.05 6.63 -2.38 -0.02 2.04 16 39 H 0.02 1.05 5.58 -2.39 -0.01 1.04 16 40 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.04 1.54 7.82 -2.39 -0.02 1.53 16 42 H 0.04 1.49 8.07 -2.39 -0.02 1.47 16 43 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -79.95 357.74 -0.58 -80.53 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.28 Total: 13.31 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.35 Total: 20.89 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -6.06 Total: -121.56 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -2.96 Total: -40.45 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.70 Total: -2.28 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.66 Total: 49.55 kcal Total: -79.95 -0.58 -80.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672003528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.676 kcal (2) G-P(sol) polarization free energy of solvation -79.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds