Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35723 * 117.00189 * 2 1 4 4 C 1.39356 * 120.35836 * 359.97312 * 3 2 1 5 5 N 1.31294 * 120.87906 * 179.74476 * 4 3 2 6 6 C 1.32884 * 121.71668 * 0.57132 * 5 4 3 7 7 C 1.47764 * 119.68700 * 179.70800 * 6 5 4 8 8 O 1.21557 * 119.99930 * 179.73072 * 7 6 5 9 9 N 1.34774 * 119.99477 * 359.44941 * 7 6 5 10 10 C 1.46499 * 119.99722 * 180.27639 * 9 7 6 11 11 C 1.53000 * 109.47513 * 180.02562 * 10 9 7 12 12 O 1.42900 * 110.63821 * 303.14460 * 11 10 9 13 13 C 1.55151 * 110.72411 * 180.02562 * 11 10 9 14 14 C 1.54906 * 101.58352 * 206.13307 * 13 11 10 15 15 N 1.47430 * 104.83033 * 37.01105 * 14 13 11 16 16 C 1.36940 * 125.64996 * 155.91221 * 15 14 13 17 17 H 1.08006 * 119.99701 * 341.71893 * 16 15 14 18 18 C 1.38811 * 120.00161 * 161.72484 * 16 15 14 19 19 N 1.31620 * 119.99793 * 156.11586 * 18 16 15 20 20 Si 1.86795 * 119.99752 * 336.10950 * 18 16 15 21 21 H 1.48499 * 109.46873 * 84.65614 * 20 18 16 22 22 H 1.48503 * 109.47155 * 204.65450 * 20 18 16 23 23 H 1.48494 * 109.47596 * 324.65476 * 20 18 16 24 24 C 1.47019 * 108.70159 * 335.86918 * 15 14 13 25 25 C 1.39717 * 120.62919 * 359.43095 * 6 5 4 26 26 F 1.35093 * 120.46805 * 180.25109 * 25 6 5 27 27 C 1.38689 * 119.06740 * 0.27912 * 25 6 5 28 28 H 1.08997 * 109.46925 * 60.00553 * 1 2 3 29 29 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46884 * 300.00264 * 1 2 3 31 31 H 1.07997 * 119.55706 * 0.04930 * 4 3 2 32 32 H 0.96997 * 120.00386 * 0.28189 * 9 7 6 33 33 H 1.09000 * 109.47384 * 299.99969 * 10 9 7 34 34 H 1.09000 * 109.47655 * 60.00206 * 10 9 7 35 35 H 0.96693 * 114.00480 * 59.29809 * 12 11 10 36 36 H 1.09001 * 111.00332 * 324.20481 * 13 11 10 37 37 H 1.09006 * 111.00532 * 88.05942 * 13 11 10 38 38 H 1.08999 * 110.37226 * 155.84644 * 14 13 11 39 39 H 1.08997 * 110.37032 * 278.06596 * 14 13 11 40 40 H 0.97001 * 119.99589 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88175 * 241.64397 * 24 15 14 42 42 H 1.09003 * 109.87807 * 120.48232 * 24 15 14 43 43 H 1.08003 * 120.79032 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0006 5 7 1.8790 3.5580 0.0044 6 6 3.2023 3.6793 -0.0010 7 6 3.8139 5.0244 -0.0016 8 8 5.0238 5.1419 -0.0016 9 7 3.0302 6.1208 -0.0077 10 6 3.6365 7.4545 -0.0143 11 6 2.5345 8.5158 -0.0198 12 8 1.6646 8.3329 -1.1387 13 6 3.1457 9.9418 -0.0276 14 6 2.0161 10.7680 0.6366 15 7 1.4607 9.8812 1.6752 16 6 0.7927 10.2888 2.7990 17 1 0.8843 11.3090 3.1414 18 6 -0.0020 9.3907 3.4981 19 7 -0.2584 9.5931 4.7731 20 14 -0.7075 7.8952 2.6293 21 1 0.2967 6.8012 2.6327 22 1 -1.9331 7.4443 3.3365 23 1 -1.0472 8.2509 1.2282 24 6 1.7418 8.4867 1.3040 25 6 4.0209 2.5470 -0.0005 26 9 5.3658 2.6741 -0.0010 27 6 3.4333 1.2907 -0.0001 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2152 2.3247 -0.0002 32 1 2.0648 6.0270 -0.0076 33 1 4.2542 7.5772 0.8753 34 1 4.2551 7.5680 -0.9046 35 1 1.2277 7.4706 -1.1605 36 1 4.0583 9.9790 0.5672 37 1 3.3311 10.2819 -1.0465 38 1 2.4230 11.6727 1.0883 39 1 1.2506 11.0221 -0.0965 40 1 -0.8141 8.9657 5.2616 41 1 0.8066 7.9445 1.1642 42 1 2.3370 8.0088 2.0821 43 1 4.0395 0.3969 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672003529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -82.793057 kcal Electronic energy + Delta-G solvation = -29871.051262 eV Core-core repulsion = 25447.090995 eV Total energy + Delta-G solvation = -4423.960267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.30771 -41.27631 -39.98141 -38.91090 -38.15276 -35.37689 -34.26277 -32.85942 -32.31025 -31.18731 -29.99960 -28.69191 -28.11584 -26.13882 -24.94411 -23.90833 -23.21172 -21.24547 -20.38868 -20.19087 -19.11027 -18.67677 -18.26655 -17.13748 -16.76082 -16.73760 -16.61074 -16.01957 -15.89090 -15.63482 -15.20298 -15.08927 -14.81486 -14.24745 -14.03899 -13.88657 -13.77712 -13.65168 -13.41904 -13.14274 -12.91909 -12.81895 -12.62672 -12.22343 -12.16908 -12.00930 -11.45422 -11.25984 -10.83048 -10.64996 -10.56026 -10.45699 -10.28508 -10.04233 -9.96438 -9.65274 -9.35146 -9.22254 -8.97952 -8.64953 -7.08804 -5.97250 -3.25596 0.10518 0.47006 2.33371 2.40270 2.87204 3.28985 3.32906 3.42942 3.47136 3.62399 3.70714 3.92291 4.22613 4.29596 4.41471 4.46737 4.51196 4.57566 4.63292 4.79094 4.94440 4.98582 5.06937 5.10413 5.18727 5.30677 5.41041 5.65296 5.75713 5.82784 5.87875 6.03935 6.15894 6.24518 6.34744 6.43952 6.45426 6.59241 6.81339 7.02791 7.37158 7.67603 7.75023 8.02599 8.29013 8.80860 9.66572 10.15099 11.19178 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.003577 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.280119 B = 7824.900109 C = 9297.568221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.302 6.302 3 C 0.133 3.867 4 C 0.012 3.988 5 N -0.391 5.391 6 C 0.007 3.993 7 C 0.575 3.425 8 O -0.522 6.522 9 N -0.707 5.707 10 C 0.103 3.897 11 C 0.105 3.895 12 O -0.544 6.544 13 C -0.113 4.113 14 C 0.135 3.865 15 N -0.606 5.606 16 C -0.242 4.242 17 H 0.095 0.905 18 C 0.021 3.979 19 N -0.905 5.905 20 Si 0.882 3.118 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.277 1.277 24 C 0.101 3.899 25 C 0.158 3.842 26 F -0.097 7.097 27 C -0.161 4.161 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.175 0.825 32 H 0.407 0.593 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.369 0.631 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -19.498 -13.015 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.212 6.212 3 C 0.084 3.916 4 C -0.151 4.151 5 N -0.102 5.102 6 C -0.132 4.132 7 C 0.359 3.641 8 O -0.398 6.398 9 N -0.359 5.359 10 C -0.021 4.021 11 C 0.063 3.937 12 O -0.349 6.349 13 C -0.152 4.152 14 C 0.010 3.990 15 N -0.333 5.333 16 C -0.368 4.368 17 H 0.112 0.888 18 C -0.178 4.178 19 N -0.549 5.549 20 Si 0.714 3.286 21 H -0.213 1.213 22 H -0.232 1.232 23 H -0.204 1.204 24 C -0.025 4.025 25 C 0.135 3.865 26 F -0.075 7.075 27 C -0.187 4.187 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.192 0.808 32 H 0.244 0.756 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.216 0.784 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.280 -18.195 -12.905 22.714 hybrid contribution -0.892 -2.329 -0.154 2.499 sum 3.388 -20.524 -13.059 24.561 Atomic orbital electron populations 1.23309 0.76720 1.05174 1.02404 1.86069 1.22648 1.25330 1.87177 1.20022 0.92064 0.86162 0.93372 1.23101 1.01273 0.86319 1.04439 1.67482 1.09295 1.27092 1.06355 1.21230 0.89454 0.94008 1.08547 1.17433 0.86263 0.83009 0.77356 1.90861 1.12994 1.86245 1.49679 1.45727 1.10853 1.05542 1.73798 1.22135 0.96233 0.80028 1.03674 1.22524 0.89087 0.95351 0.86736 1.86561 1.62422 1.39651 1.46229 1.22754 0.99004 0.91851 1.01567 1.21620 0.93121 0.93670 0.90639 1.44710 1.66010 0.99495 1.23047 1.18686 1.21472 0.98812 0.97871 0.88760 1.24971 0.99195 0.97953 0.95662 1.69862 1.40332 1.38260 1.06459 0.86951 0.78458 0.83625 0.79557 1.21320 1.23204 1.20362 1.22314 0.96819 0.89546 0.93816 1.18201 0.78751 0.92695 0.96879 1.91654 1.27131 1.96407 1.92261 1.20826 0.92895 0.97741 1.07280 0.91650 0.87242 0.91576 0.80807 0.75649 0.89642 0.90058 0.78406 0.89571 0.90130 0.92951 0.95109 0.92745 0.95311 0.93392 0.81849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.82 101.05 0.99 1.06 16 2 O -0.30 -2.12 10.50 -18.87 -0.20 -2.32 16 3 C 0.13 1.14 6.72 -38.86 -0.26 0.88 16 4 C 0.01 0.10 10.21 -17.37 -0.18 -0.07 16 5 N -0.39 -4.74 9.52 -9.63 -0.09 -4.83 16 6 C 0.01 0.09 6.75 -82.97 -0.56 -0.47 16 7 C 0.58 8.98 7.80 -12.37 -0.10 8.88 16 8 O -0.52 -9.40 15.30 5.32 0.08 -9.32 16 9 N -0.71 -10.47 5.19 -61.28 -0.32 -10.79 16 10 C 0.10 1.55 4.74 -4.04 -0.02 1.53 16 11 C 0.10 1.76 0.92 -88.79 -0.08 1.68 16 12 O -0.54 -8.87 13.09 -35.23 -0.46 -9.33 16 13 C -0.11 -1.82 6.26 -24.59 -0.15 -1.97 16 14 C 0.13 2.68 7.23 -2.53 -0.02 2.66 16 15 N -0.61 -14.75 3.21 -170.07 -0.55 -15.29 16 16 C -0.24 -6.90 10.56 -15.06 -0.16 -7.06 16 17 H 0.09 2.83 8.06 -52.48 -0.42 2.40 16 18 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 19 N -0.91 -28.02 13.97 55.49 0.78 -27.24 16 20 Si 0.88 22.51 24.40 -169.99 -4.15 18.36 16 21 H -0.29 -6.97 6.83 56.52 0.39 -6.58 16 22 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 23 H -0.28 -6.98 6.90 56.52 0.39 -6.59 16 24 C 0.10 2.16 4.24 -3.07 -0.01 2.15 16 25 C 0.16 1.91 7.31 -38.86 -0.28 1.62 16 26 F -0.10 -1.31 15.54 2.25 0.03 -1.28 16 27 C -0.16 -1.48 10.10 -39.11 -0.40 -1.88 16 28 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 29 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.18 1.05 6.31 -52.49 -0.33 0.72 16 32 H 0.41 5.75 6.58 -40.82 -0.27 5.48 16 33 H 0.09 1.34 8.06 -51.93 -0.42 0.92 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.37 4.97 7.78 45.56 0.35 5.33 16 36 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.03 0.67 3.47 -51.93 -0.18 0.49 16 42 H 0.05 1.09 7.76 -51.93 -0.40 0.69 16 43 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 358.13 15.07 5.40 5.40 Total: -1.00 -35.84 358.13 -5.38 -41.22 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.58 Total: 5.89 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.32 Total: 9.54 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.18 Total: -58.15 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.58 Total: -20.97 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.03 Total: -1.28 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.15 Total: 18.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.84 -5.38 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672003529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.572 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds