Wall clock time and date at job start Sat Apr 11 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35723 * 117.00189 * 2 1 4 4 C 1.39356 * 120.35836 * 359.97312 * 3 2 1 5 5 N 1.31294 * 120.87906 * 179.74476 * 4 3 2 6 6 C 1.32884 * 121.71668 * 0.57132 * 5 4 3 7 7 C 1.47764 * 119.68700 * 179.70800 * 6 5 4 8 8 O 1.21557 * 119.99930 * 179.73072 * 7 6 5 9 9 N 1.34774 * 119.99477 * 359.44941 * 7 6 5 10 10 C 1.46499 * 119.99722 * 180.27639 * 9 7 6 11 11 C 1.53000 * 109.47513 * 180.02562 * 10 9 7 12 12 O 1.42900 * 110.63821 * 303.14460 * 11 10 9 13 13 C 1.55151 * 110.72411 * 180.02562 * 11 10 9 14 14 C 1.54906 * 101.58352 * 206.13307 * 13 11 10 15 15 N 1.47430 * 104.83033 * 37.01105 * 14 13 11 16 16 C 1.36940 * 125.64996 * 155.91221 * 15 14 13 17 17 H 1.08006 * 119.99701 * 341.71893 * 16 15 14 18 18 C 1.38811 * 120.00161 * 161.72484 * 16 15 14 19 19 N 1.31620 * 119.99793 * 156.11586 * 18 16 15 20 20 Si 1.86795 * 119.99752 * 336.10950 * 18 16 15 21 21 H 1.48499 * 109.46873 * 84.65614 * 20 18 16 22 22 H 1.48503 * 109.47155 * 204.65450 * 20 18 16 23 23 H 1.48494 * 109.47596 * 324.65476 * 20 18 16 24 24 C 1.47019 * 108.70159 * 335.86918 * 15 14 13 25 25 C 1.39717 * 120.62919 * 359.43095 * 6 5 4 26 26 F 1.35093 * 120.46805 * 180.25109 * 25 6 5 27 27 C 1.38689 * 119.06740 * 0.27912 * 25 6 5 28 28 H 1.08997 * 109.46925 * 60.00553 * 1 2 3 29 29 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46884 * 300.00264 * 1 2 3 31 31 H 1.07997 * 119.55706 * 0.04930 * 4 3 2 32 32 H 0.96997 * 120.00386 * 0.28189 * 9 7 6 33 33 H 1.09000 * 109.47384 * 299.99969 * 10 9 7 34 34 H 1.09000 * 109.47655 * 60.00206 * 10 9 7 35 35 H 0.96693 * 114.00480 * 59.29809 * 12 11 10 36 36 H 1.09001 * 111.00332 * 324.20481 * 13 11 10 37 37 H 1.09006 * 111.00532 * 88.05942 * 13 11 10 38 38 H 1.08999 * 110.37226 * 155.84644 * 14 13 11 39 39 H 1.08997 * 110.37032 * 278.06596 * 14 13 11 40 40 H 0.97001 * 119.99589 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.88175 * 241.64397 * 24 15 14 42 42 H 1.09003 * 109.87807 * 120.48232 * 24 15 14 43 43 H 1.08003 * 120.79032 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0006 5 7 1.8790 3.5580 0.0044 6 6 3.2023 3.6793 -0.0010 7 6 3.8139 5.0244 -0.0016 8 8 5.0238 5.1419 -0.0016 9 7 3.0302 6.1208 -0.0077 10 6 3.6365 7.4545 -0.0143 11 6 2.5345 8.5158 -0.0198 12 8 1.6646 8.3329 -1.1387 13 6 3.1457 9.9418 -0.0276 14 6 2.0161 10.7680 0.6366 15 7 1.4607 9.8812 1.6752 16 6 0.7927 10.2888 2.7990 17 1 0.8843 11.3090 3.1414 18 6 -0.0020 9.3907 3.4981 19 7 -0.2584 9.5931 4.7731 20 14 -0.7075 7.8952 2.6293 21 1 0.2967 6.8012 2.6327 22 1 -1.9331 7.4443 3.3365 23 1 -1.0472 8.2509 1.2282 24 6 1.7418 8.4867 1.3040 25 6 4.0209 2.5470 -0.0005 26 9 5.3658 2.6741 -0.0010 27 6 3.4333 1.2907 -0.0001 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2152 2.3247 -0.0002 32 1 2.0648 6.0270 -0.0076 33 1 4.2542 7.5772 0.8753 34 1 4.2551 7.5680 -0.9046 35 1 1.2277 7.4706 -1.1605 36 1 4.0583 9.9790 0.5672 37 1 3.3311 10.2819 -1.0465 38 1 2.4230 11.6727 1.0883 39 1 1.2506 11.0221 -0.0965 40 1 -0.8141 8.9657 5.2616 41 1 0.8066 7.9445 1.1642 42 1 2.3370 8.0088 2.0821 43 1 4.0395 0.3969 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672003529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:40 Heat of formation + Delta-G solvation = -113.105562 kcal Electronic energy + Delta-G solvation = -29872.365711 eV Core-core repulsion = 25447.090995 eV Total energy + Delta-G solvation = -4425.274716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.23330 -42.05309 -41.11631 -40.11154 -39.01893 -36.96416 -35.47577 -34.32766 -33.60078 -32.18618 -31.55862 -30.09508 -28.59159 -27.65398 -26.08264 -25.23454 -24.15387 -22.59924 -21.83042 -21.59297 -19.95386 -19.61028 -19.14354 -18.91404 -18.27047 -17.50039 -17.46418 -17.04820 -16.98690 -16.70347 -16.33465 -16.18480 -15.84920 -15.67159 -15.57102 -15.28855 -14.97472 -14.63197 -14.49261 -14.37791 -14.25266 -13.95350 -13.83869 -13.59013 -13.30161 -13.01039 -12.97972 -12.56909 -12.49361 -12.21182 -12.15205 -11.94792 -11.59661 -11.47436 -11.02859 -10.92250 -10.80318 -10.77770 -10.37448 -9.77329 -9.11553 -8.21543 -5.46767 -0.73382 -0.27132 1.24253 1.34466 1.42894 1.45165 1.70772 1.88406 2.38245 2.41883 2.80480 2.87085 2.93818 3.03851 3.18886 3.26935 3.41430 3.55866 3.67213 3.68006 3.73897 3.94689 4.31894 4.35390 4.36027 4.38601 4.38654 4.50070 4.62820 4.65772 4.74109 4.78117 4.78440 4.96895 4.99921 5.06422 5.15339 5.30305 5.63873 5.90232 6.06841 6.09050 6.37971 6.56961 6.71365 6.89527 7.49727 8.06082 8.98449 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.003577 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.280119 B = 7824.900109 C = 9297.568221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.304 6.304 3 C 0.150 3.850 4 C 0.016 3.984 5 N -0.406 5.406 6 C -0.021 4.021 7 C 0.572 3.428 8 O -0.556 6.556 9 N -0.705 5.705 10 C 0.111 3.889 11 C 0.121 3.879 12 O -0.546 6.546 13 C -0.102 4.102 14 C 0.127 3.873 15 N -0.624 5.624 16 C -0.238 4.238 17 H 0.063 0.937 18 C -0.039 4.039 19 N -0.953 5.953 20 Si 0.950 3.050 21 H -0.270 1.270 22 H -0.307 1.307 23 H -0.270 1.270 24 C 0.096 3.904 25 C 0.145 3.855 26 F -0.112 7.112 27 C -0.157 4.157 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.207 0.793 32 H 0.411 0.589 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.382 0.618 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.022 0.978 42 H 0.032 0.968 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -22.048 -15.228 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.214 6.214 3 C 0.099 3.901 4 C -0.148 4.148 5 N -0.118 5.118 6 C -0.159 4.159 7 C 0.358 3.642 8 O -0.434 6.434 9 N -0.357 5.357 10 C -0.013 4.013 11 C 0.079 3.921 12 O -0.353 6.353 13 C -0.141 4.141 14 C 0.003 3.997 15 N -0.351 5.351 16 C -0.367 4.367 17 H 0.081 0.919 18 C -0.234 4.234 19 N -0.599 5.599 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.236 1.236 23 H -0.196 1.196 24 C -0.030 4.030 25 C 0.122 3.878 26 F -0.090 7.090 27 C -0.183 4.183 28 H 0.099 0.901 29 H 0.148 0.852 30 H 0.093 0.907 31 H 0.223 0.777 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.693 -20.752 -15.166 25.967 hybrid contribution -0.812 -1.584 0.538 1.860 sum 2.881 -22.337 -14.628 26.855 Atomic orbital electron populations 1.23690 0.74594 1.07032 1.03547 1.86097 1.24765 1.24268 1.86309 1.20029 0.91829 0.86732 0.91495 1.23652 1.02725 0.85612 1.02782 1.67447 1.08595 1.28618 1.07142 1.20926 0.90335 0.93128 1.11476 1.17788 0.85957 0.83956 0.76473 1.90828 1.14319 1.86888 1.51345 1.45695 1.10996 1.05356 1.73611 1.22017 0.95465 0.79705 1.04078 1.22295 0.88779 0.96461 0.84517 1.86543 1.62514 1.40927 1.45319 1.22765 0.97846 0.90338 1.03111 1.21825 0.94242 0.93942 0.89738 1.44830 1.65565 1.01709 1.23025 1.18655 1.21325 0.97602 0.99112 0.91908 1.25646 1.00034 1.01630 0.96106 1.69991 1.41829 1.40135 1.07982 0.85863 0.77506 0.80408 0.78242 1.19612 1.23616 1.19616 1.22422 0.96844 0.87658 0.96030 1.18368 0.78114 0.93517 0.97839 1.91608 1.28264 1.96567 1.92592 1.21020 0.93644 0.97306 1.06321 0.90146 0.85227 0.90723 0.77660 0.75215 0.90448 0.88447 0.76883 0.88130 0.87081 0.92738 0.95198 0.92871 0.96073 0.94974 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.13 16 2 O -0.30 -3.18 10.50 -90.45 -0.95 -4.13 16 3 C 0.15 2.11 6.72 22.73 0.15 2.26 16 4 C 0.02 0.25 10.21 85.04 0.87 1.12 16 5 N -0.41 -9.08 9.52 -184.39 -1.76 -10.83 16 6 C -0.02 -0.56 6.75 41.86 0.28 -0.27 16 7 C 0.57 17.64 7.80 86.76 0.68 18.32 16 8 O -0.56 -20.12 15.30 -3.90 -0.06 -20.18 16 9 N -0.70 -19.98 5.19 -466.06 -2.42 -22.40 16 10 C 0.11 3.15 4.74 86.38 0.41 3.56 16 11 C 0.12 3.82 0.92 -9.61 -0.01 3.81 16 12 O -0.55 -16.19 13.09 -148.98 -1.95 -18.15 16 13 C -0.10 -3.02 6.26 31.98 0.20 -2.82 16 14 C 0.13 4.90 7.23 86.85 0.63 5.53 16 15 N -0.62 -30.28 3.21 -691.98 -2.22 -32.50 16 16 C -0.24 -13.94 10.56 84.03 0.89 -13.06 16 17 H 0.06 3.95 8.06 -2.91 -0.02 3.93 16 18 C -0.04 -2.35 5.43 84.86 0.46 -1.89 16 19 N -0.95 -60.69 13.97 21.65 0.30 -60.39 16 20 Si 0.95 46.97 24.40 68.60 1.67 48.64 16 21 H -0.27 -12.48 6.83 99.48 0.68 -11.80 16 22 H -0.31 -15.25 7.11 99.48 0.71 -14.55 16 23 H -0.27 -12.89 6.90 99.48 0.69 -12.21 16 24 C 0.10 4.01 4.24 86.73 0.37 4.37 16 25 C 0.14 3.40 7.31 22.74 0.17 3.57 16 26 F -0.11 -3.08 15.54 44.97 0.70 -2.38 16 27 C -0.16 -2.58 10.10 22.57 0.23 -2.35 16 28 H 0.08 0.05 7.67 -2.39 -0.02 0.03 16 29 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 0.15 7.67 -2.39 -0.02 0.13 16 31 H 0.21 1.62 6.31 -2.91 -0.02 1.60 16 32 H 0.41 10.91 6.58 -92.71 -0.61 10.30 16 33 H 0.08 2.35 8.06 -2.39 -0.02 2.33 16 34 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.38 9.17 7.78 -74.06 -0.58 8.59 16 36 H 0.10 2.70 8.05 -2.39 -0.02 2.68 16 37 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 41 H 0.02 0.95 3.47 -2.39 -0.01 0.94 16 42 H 0.03 1.45 7.76 -2.39 -0.02 1.43 16 43 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -79.89 358.13 -0.39 -80.28 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.15 Total: 18.76 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.43 Total: 23.27 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -6.09 Total: -126.12 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.96 Total: -42.46 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.70 Total: -2.38 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.67 Total: 48.64 kcal Total: -79.89 -0.39 -80.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672003529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.822 kcal (2) G-P(sol) polarization free energy of solvation -79.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds