Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99869 * 2 1 4 4 C 1.53004 * 109.46871 * 89.99923 * 3 2 1 5 5 N 1.46901 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.40193 * 120.37029 * 275.00259 * 7 6 5 9 9 C 1.35351 * 119.95122 * 179.97438 * 8 7 6 10 10 N 1.35759 * 120.70064 * 359.97438 * 9 8 7 11 11 C 1.46501 * 119.62428 * 179.97438 * 10 9 8 12 12 C 1.34661 * 120.75061 * 0.02562 * 10 9 8 13 13 O 1.22069 * 119.98504 * 180.02562 * 12 10 9 14 14 C 1.36397 * 120.36585 * 94.72215 * 7 6 5 15 15 C 1.34777 * 120.00172 * 179.97438 * 2 1 3 16 16 O 1.21280 * 119.99940 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00011 * 0.02562 * 15 2 1 18 18 S 1.80993 * 109.47098 * 179.97438 * 17 15 2 19 19 C 1.76199 * 100.00034 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00194 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99744 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47139 * 89.99766 * 23 21 19 25 25 H 1.48494 * 109.47287 * 209.99739 * 23 21 19 26 26 H 1.48496 * 109.46989 * 329.99808 * 23 21 19 27 27 H 1.08999 * 109.47321 * 89.99777 * 1 2 3 28 28 H 1.09003 * 109.47143 * 209.99817 * 1 2 3 29 29 H 1.08997 * 109.47435 * 329.99462 * 1 2 3 30 30 H 1.08995 * 109.47316 * 330.00579 * 3 2 1 31 31 H 1.08996 * 109.47008 * 209.99475 * 3 2 1 32 32 H 1.09004 * 109.46889 * 60.00248 * 4 3 2 33 33 H 1.08995 * 109.47384 * 299.99888 * 4 3 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 3 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.08006 * 120.02784 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.64970 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.46720 * 90.00242 * 11 10 9 40 40 H 1.08997 * 109.47048 * 210.00134 * 11 10 9 41 41 H 1.08997 * 109.47442 * 330.00266 * 11 10 9 42 42 H 1.08001 * 120.35267 * 0.02562 * 14 7 6 43 43 H 1.09011 * 109.46526 * 299.99520 * 17 15 2 44 44 H 1.08993 * 109.47153 * 59.99459 * 17 15 2 45 45 H 0.97001 * 119.99871 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1874 2.9823 1.4426 6 6 3.4511 3.4379 2.8141 7 6 4.2043 4.7425 2.7739 8 6 5.6006 4.7513 2.6490 9 6 6.2685 5.9280 2.6133 10 7 5.6005 7.1069 2.6967 11 6 6.3472 8.3668 2.6562 12 6 4.2596 7.1315 2.8173 13 8 3.6731 8.1995 2.8907 14 6 3.5345 5.9281 2.8529 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8479 0.0005 19 6 1.4416 -5.2081 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9283 -6.5080 0.0010 22 7 1.0916 -7.5241 0.0010 23 14 3.7709 -6.8154 0.0004 24 1 4.2595 -6.8970 1.4004 25 1 4.0595 -8.0927 -0.6998 26 1 4.4584 -5.7008 -0.6996 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5137 32 1 3.0415 0.9507 1.9563 33 1 1.5000 1.8407 1.9564 34 1 4.0449 2.9044 0.9166 35 1 2.5058 3.5804 3.3376 36 1 4.0469 2.6899 3.3371 37 1 6.1431 3.8198 2.5814 38 1 7.3442 5.9291 2.5166 39 1 6.4414 8.7001 1.6227 40 1 5.8161 9.1226 3.2348 41 1 7.3394 8.2149 3.0809 42 1 2.4586 5.9420 2.9453 43 1 0.7585 -2.5298 0.8904 44 1 0.7591 -2.5302 -0.8896 45 1 1.4318 -8.4325 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691262449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -28.827567 kcal Electronic energy + Delta-G solvation = -25488.983906 eV Core-core repulsion = 21633.576935 eV Total energy + Delta-G solvation = -3855.406972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67718 -39.66349 -37.79974 -36.86978 -35.65142 -34.39869 -32.46150 -31.02227 -30.28828 -29.02991 -27.77155 -26.48541 -25.65449 -25.01932 -24.05261 -22.48743 -21.68490 -19.32105 -17.93403 -17.82435 -17.70031 -16.88165 -16.62258 -16.44891 -16.20653 -15.83480 -15.48678 -15.00424 -14.80572 -14.60861 -14.44889 -13.88575 -13.71667 -13.62049 -13.41310 -13.21013 -13.06826 -13.02383 -12.80663 -12.41230 -12.39374 -12.31678 -12.11184 -11.94936 -11.81709 -11.30608 -11.22957 -11.03300 -10.61677 -10.36578 -10.30983 -9.88263 -9.54105 -9.02754 -8.85514 -8.65756 -8.52077 -8.37045 -6.94754 -6.31053 -4.03053 0.39981 1.44258 2.23425 2.66124 2.87604 3.10636 3.25046 3.30706 3.47931 3.55914 3.97253 4.09380 4.20583 4.30659 4.33832 4.57407 4.59137 4.72129 4.79061 4.83343 4.86146 4.94782 5.06082 5.08133 5.11006 5.13552 5.21015 5.26067 5.37218 5.38422 5.48484 5.64734 5.66674 5.69572 5.73453 5.85170 5.98456 5.98585 6.10601 6.40558 6.61722 6.64365 6.96446 7.38833 7.65108 7.91914 8.38232 8.39554 9.15082 10.78134 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.001708 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.884171 B =16393.363113 C =17205.305961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.622 5.622 3 C 0.121 3.879 4 C 0.043 3.957 5 N -0.680 5.680 6 C 0.091 3.909 7 C 0.017 3.983 8 C -0.222 4.222 9 C 0.129 3.871 10 N -0.501 5.501 11 C 0.059 3.941 12 C 0.512 3.488 13 O -0.556 6.556 14 C -0.221 4.221 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.345 0.655 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 28.619 5.184 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C -0.003 4.003 4 C -0.087 4.087 5 N -0.311 5.311 6 C -0.038 4.038 7 C 0.013 3.987 8 C -0.245 4.245 9 C 0.002 3.998 10 N -0.213 5.213 11 C -0.083 4.083 12 C 0.315 3.685 13 O -0.439 6.439 14 C -0.244 4.244 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.272 4.272 18 S 0.082 5.918 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.167 0.833 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.670 29.518 5.150 31.193 hybrid contribution -0.087 -1.149 0.303 1.191 sum 8.583 28.369 5.453 30.136 Atomic orbital electron populations 1.21825 0.79232 1.03336 1.02103 1.47787 1.07075 1.05487 1.75451 1.21257 0.98431 0.84749 0.95871 1.22364 0.98874 0.89325 0.98165 1.60446 1.27317 1.30648 1.12725 1.20986 0.99649 0.92241 0.90940 1.20073 0.93211 0.95292 0.90116 1.20616 0.94096 0.97759 1.12051 1.21893 0.98553 0.84538 0.94810 1.45418 1.08878 1.07749 1.59217 1.22157 0.96628 0.85438 1.04078 1.17162 0.80577 0.91409 0.79386 1.90963 1.67380 1.32120 1.53411 1.22010 1.01476 0.90382 1.10524 1.20349 0.87928 0.84709 0.75098 1.90681 1.13731 1.86882 1.48051 1.23316 1.03087 0.95130 1.05652 1.84766 1.12025 0.97581 1.97423 1.22306 0.94864 0.90880 1.58839 0.89385 1.24710 0.98519 0.94870 0.93175 1.69935 1.34793 0.98882 1.48010 0.86736 0.85388 0.79826 0.79901 1.19238 1.19929 1.15944 0.92413 0.90530 0.91119 0.89807 0.89924 0.94092 0.90681 0.83655 0.89438 0.93179 0.83744 0.81975 0.90573 0.88811 0.89691 0.83285 0.88512 0.88444 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.84 0.61 1.35 16 2 N -0.62 -7.92 2.87 -181.58 -0.52 -8.44 16 3 C 0.12 1.29 5.67 -4.04 -0.02 1.27 16 4 C 0.04 0.42 6.01 -3.82 -0.02 0.39 16 5 N -0.68 -5.66 6.49 -115.05 -0.75 -6.40 16 6 C 0.09 0.67 5.84 -4.97 -0.03 0.64 16 7 C 0.02 0.13 5.40 -104.55 -0.56 -0.44 16 8 C -0.22 -1.26 9.73 -39.88 -0.39 -1.65 16 9 C 0.13 0.61 10.28 -16.84 -0.17 0.44 16 10 N -0.50 -3.57 2.99 -127.20 -0.38 -3.95 16 11 C 0.06 0.26 10.36 59.85 0.62 0.88 16 12 C 0.51 5.50 7.41 -15.44 -0.11 5.39 16 13 O -0.56 -7.99 16.64 4.86 0.08 -7.91 16 14 C -0.22 -2.08 9.63 -39.38 -0.38 -2.46 16 15 C 0.53 9.26 7.69 -10.99 -0.08 9.18 16 16 O -0.52 -10.78 15.44 5.56 0.09 -10.70 16 17 C -0.12 -2.31 4.71 36.01 0.17 -2.14 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.29 13.97 55.49 0.78 -25.51 16 23 Si 0.86 21.54 27.74 -169.99 -4.72 16.82 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 29 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.08 0.75 8.07 -51.93 -0.42 0.34 16 31 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.35 2.73 8.72 -39.29 -0.34 2.39 16 35 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.05 0.36 8.13 -51.93 -0.42 -0.07 16 37 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 38 H 0.16 0.16 8.04 -52.49 -0.42 -0.27 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.55 7.39 -51.93 -0.38 0.17 16 41 H 0.08 0.11 8.01 -51.93 -0.42 -0.31 16 42 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.10 1.71 7.40 -51.91 -0.38 1.33 16 44 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -37.25 393.02 -8.54 -45.79 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.88 Total: -1.01 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.16 Total: 1.00 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.87 Total: -44.31 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.82 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.25 -8.54 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691262449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.958 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds