Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 119.99869 * 2 1 4 4 C 1.53004 * 109.46871 * 89.99923 * 3 2 1 5 5 N 1.46901 * 109.46916 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 C 1.40193 * 120.37029 * 275.00259 * 7 6 5 9 9 C 1.35351 * 119.95122 * 179.97438 * 8 7 6 10 10 N 1.35759 * 120.70064 * 359.97438 * 9 8 7 11 11 C 1.46501 * 119.62428 * 179.97438 * 10 9 8 12 12 C 1.34661 * 120.75061 * 0.02562 * 10 9 8 13 13 O 1.22069 * 119.98504 * 180.02562 * 12 10 9 14 14 C 1.36397 * 120.36585 * 94.72215 * 7 6 5 15 15 C 1.34777 * 120.00172 * 179.97438 * 2 1 3 16 16 O 1.21280 * 119.99940 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00011 * 0.02562 * 15 2 1 18 18 S 1.80993 * 109.47098 * 179.97438 * 17 15 2 19 19 C 1.76199 * 100.00034 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00178 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00355 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00194 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99744 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47139 * 89.99766 * 23 21 19 25 25 H 1.48494 * 109.47287 * 209.99739 * 23 21 19 26 26 H 1.48496 * 109.46989 * 329.99808 * 23 21 19 27 27 H 1.08999 * 109.47321 * 89.99777 * 1 2 3 28 28 H 1.09003 * 109.47143 * 209.99817 * 1 2 3 29 29 H 1.08997 * 109.47435 * 329.99462 * 1 2 3 30 30 H 1.08995 * 109.47316 * 330.00579 * 3 2 1 31 31 H 1.08996 * 109.47008 * 209.99475 * 3 2 1 32 32 H 1.09004 * 109.46889 * 60.00248 * 4 3 2 33 33 H 1.08995 * 109.47384 * 299.99888 * 4 3 2 34 34 H 1.00901 * 111.00067 * 303.95263 * 5 4 3 35 35 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 36 36 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 37 37 H 1.08006 * 120.02784 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.64970 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.46720 * 90.00242 * 11 10 9 40 40 H 1.08997 * 109.47048 * 210.00134 * 11 10 9 41 41 H 1.08997 * 109.47442 * 330.00266 * 11 10 9 42 42 H 1.08001 * 120.35267 * 0.02562 * 14 7 6 43 43 H 1.09011 * 109.46526 * 299.99520 * 17 15 2 44 44 H 1.08993 * 109.47153 * 59.99459 * 17 15 2 45 45 H 0.97001 * 119.99871 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1874 2.9823 1.4426 6 6 3.4511 3.4379 2.8141 7 6 4.2043 4.7425 2.7739 8 6 5.6006 4.7513 2.6490 9 6 6.2685 5.9280 2.6133 10 7 5.6005 7.1069 2.6967 11 6 6.3472 8.3668 2.6562 12 6 4.2596 7.1315 2.8173 13 8 3.6731 8.1995 2.8907 14 6 3.5345 5.9281 2.8529 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1671 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8479 0.0005 19 6 1.4416 -5.2081 0.0013 20 1 0.3764 -5.0305 0.0020 21 6 1.9283 -6.5080 0.0010 22 7 1.0916 -7.5241 0.0010 23 14 3.7709 -6.8154 0.0004 24 1 4.2595 -6.8970 1.4004 25 1 4.0595 -8.0927 -0.6998 26 1 4.4584 -5.7008 -0.6996 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1384 -0.5137 32 1 3.0415 0.9507 1.9563 33 1 1.5000 1.8407 1.9564 34 1 4.0449 2.9044 0.9166 35 1 2.5058 3.5804 3.3376 36 1 4.0469 2.6899 3.3371 37 1 6.1431 3.8198 2.5814 38 1 7.3442 5.9291 2.5166 39 1 6.4414 8.7001 1.6227 40 1 5.8161 9.1226 3.2348 41 1 7.3394 8.2149 3.0809 42 1 2.4586 5.9420 2.9453 43 1 0.7585 -2.5298 0.8904 44 1 0.7591 -2.5302 -0.8896 45 1 1.4318 -8.4325 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691262449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -55.832828 kcal Electronic energy + Delta-G solvation = -25490.154942 eV Core-core repulsion = 21633.576935 eV Total energy + Delta-G solvation = -3856.578008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.28609 -40.90805 -38.53350 -37.64695 -36.64543 -35.13243 -34.66808 -32.00084 -30.95854 -30.01967 -28.50645 -27.85660 -27.29204 -25.76277 -24.60420 -23.36867 -22.31239 -20.66580 -19.55618 -18.53878 -18.34297 -18.11409 -17.38164 -17.29900 -17.07534 -17.01640 -16.77411 -16.48107 -15.88693 -15.45890 -15.25789 -15.12973 -14.88356 -14.61384 -14.30697 -14.20813 -14.06500 -13.95169 -13.60020 -13.52913 -13.35640 -13.18058 -13.02733 -12.93761 -12.81366 -12.64936 -12.60297 -12.53888 -12.05038 -11.85508 -11.16725 -11.10966 -10.98771 -10.86224 -10.52470 -9.75555 -9.51179 -8.99725 -8.98086 -8.51044 -6.22088 -0.16010 0.84566 0.98737 1.31625 1.46474 1.52055 1.55008 1.73049 2.06354 2.25393 2.58070 2.69095 2.87223 3.28282 3.57672 3.66397 3.76267 3.86328 4.00968 4.09191 4.15969 4.19208 4.30046 4.32745 4.42399 4.44021 4.46117 4.53831 4.61071 4.66448 4.69524 4.77704 4.82619 4.95076 4.95599 5.00525 5.13463 5.44596 5.49072 5.59836 5.71023 5.85109 6.06283 6.11750 6.22854 6.30752 6.94057 6.96244 7.08483 8.61253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.001708 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.884171 B =16393.363113 C =17205.305961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.121 3.879 4 C 0.054 3.946 5 N -0.678 5.678 6 C 0.092 3.908 7 C 0.034 3.966 8 C -0.234 4.234 9 C 0.146 3.854 10 N -0.498 5.498 11 C 0.052 3.948 12 C 0.496 3.504 13 O -0.612 6.612 14 C -0.256 4.256 15 C 0.532 3.468 16 O -0.560 6.560 17 C -0.108 4.108 18 S -0.176 6.176 19 C -0.529 4.529 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.260 1.260 26 H -0.236 1.236 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.084 0.916 34 H 0.349 0.651 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.168 0.832 38 H 0.213 0.787 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.737 29.609 5.092 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.002 4.002 4 C -0.076 4.076 5 N -0.310 5.310 6 C -0.037 4.037 7 C 0.029 3.971 8 C -0.257 4.257 9 C 0.019 3.981 10 N -0.207 5.207 11 C -0.088 4.088 12 C 0.301 3.699 13 O -0.500 6.500 14 C -0.279 4.279 15 C 0.319 3.681 16 O -0.438 6.438 17 C -0.258 4.258 18 S 0.051 5.949 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.160 1.160 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.103 0.897 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.185 0.815 38 H 0.229 0.771 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.543 30.528 5.055 32.690 hybrid contribution -0.719 -1.353 0.327 1.566 sum 9.824 29.175 5.382 31.252 Atomic orbital electron populations 1.22122 0.76845 1.04786 1.03506 1.47780 1.08538 1.04680 1.73187 1.21404 0.98069 0.84027 0.96698 1.22193 0.99093 0.89171 0.97127 1.60430 1.27615 1.29620 1.13314 1.20999 0.99948 0.92266 0.90487 1.20163 0.94250 0.94387 0.88286 1.20945 0.93250 0.99297 1.12164 1.22673 1.00555 0.83111 0.91786 1.45540 1.08092 1.09660 1.57449 1.22400 0.97778 0.83929 1.04699 1.17383 0.81942 0.90992 0.79605 1.90915 1.68753 1.33675 1.56680 1.21877 1.01234 0.90923 1.13821 1.20028 0.87301 0.85339 0.75433 1.90665 1.15196 1.87431 1.50515 1.23298 1.01806 0.93709 1.07023 1.84662 1.13792 0.98897 1.97569 1.22456 0.94387 0.92542 1.58317 0.92004 1.25564 1.02765 0.94750 0.92869 1.70015 1.36794 0.99527 1.49097 0.85865 0.80199 0.80078 0.80219 1.18659 1.18389 1.16028 0.90997 0.90760 0.88120 0.87264 0.91422 0.96407 0.89745 0.83258 0.89442 0.92423 0.81479 0.77086 0.89721 0.90898 0.85549 0.84502 0.87051 0.87182 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.24 127.77 1.31 2.40 16 2 N -0.61 -14.12 2.87 -846.77 -2.43 -16.55 16 3 C 0.12 2.32 5.67 86.38 0.49 2.81 16 4 C 0.05 0.96 6.01 86.30 0.52 1.47 16 5 N -0.68 -10.09 6.49 -517.92 -3.36 -13.45 16 6 C 0.09 1.22 5.84 85.55 0.50 1.72 16 7 C 0.03 0.47 5.40 -19.82 -0.11 0.36 16 8 C -0.23 -1.98 9.73 22.08 0.21 -1.77 16 9 C 0.15 0.86 10.28 83.42 0.86 1.72 16 10 N -0.50 -6.33 2.99 -674.47 -2.01 -8.35 16 11 C 0.05 0.37 10.36 127.77 1.32 1.69 16 12 C 0.50 10.99 7.41 84.82 0.63 11.62 16 13 O -0.61 -18.91 16.64 -5.54 -0.09 -19.01 16 14 C -0.26 -4.96 9.63 22.40 0.22 -4.74 16 15 C 0.53 17.87 7.69 87.66 0.67 18.54 16 16 O -0.56 -22.96 15.44 -3.03 -0.05 -23.01 16 17 C -0.11 -3.99 4.71 71.24 0.34 -3.66 16 18 S -0.18 -8.76 18.55 -56.49 -1.05 -9.80 16 19 C -0.53 -30.51 10.04 67.96 0.68 -29.83 16 20 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 21 C 0.05 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.30 13.97 21.65 0.30 -55.00 16 23 Si 0.91 44.40 27.74 68.60 1.90 46.31 16 24 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.24 6.44 -2.39 -0.02 1.23 16 29 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 30 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.07 1.55 7.42 -2.39 -0.02 1.54 16 32 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.35 4.85 8.72 -89.69 -0.78 4.07 16 35 H 0.09 1.18 8.06 -2.39 -0.02 1.16 16 36 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 37 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.21 -0.84 8.04 -2.91 -0.02 -0.86 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 40 H 0.07 0.86 7.39 -2.39 -0.02 0.85 16 41 H 0.13 -0.18 8.01 -2.39 -0.02 -0.20 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.11 3.80 7.40 -2.39 -0.02 3.78 16 44 H 0.11 3.80 8.11 -2.40 -0.02 3.78 16 45 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -84.79 393.02 1.49 -83.30 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.18 Total: 10.08 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 8.11 Total: 5.49 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -7.51 Total: -93.35 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.14 Total: -42.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.31 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.05 Total: -9.80 kcal Total: -84.79 1.49 -83.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691262449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.463 kcal (2) G-P(sol) polarization free energy of solvation -84.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds