Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47002 * 2 1 4 4 C 1.46506 * 120.00039 * 262.23781 * 3 2 1 5 5 C 1.52996 * 109.47360 * 89.99680 * 4 3 2 6 6 N 1.46493 * 109.47387 * 180.02562 * 5 4 3 7 7 C 1.36932 * 120.00367 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00217 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00475 * 179.97438 * 7 6 5 10 10 N 1.31625 * 120.00061 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00387 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47598 * 89.99906 * 11 9 7 13 13 H 1.48507 * 109.47387 * 210.00350 * 11 9 7 14 14 H 1.48506 * 109.47132 * 329.99905 * 11 9 7 15 15 C 1.34774 * 120.00136 * 82.23742 * 3 2 1 16 16 O 1.21631 * 120.00026 * 184.68030 * 15 3 2 17 17 C 1.47260 * 119.99890 * 4.68287 * 15 3 2 18 18 C 1.35211 * 123.14399 * 181.70058 * 17 15 3 19 19 S 1.70941 * 108.83060 * 179.86972 * 18 17 15 20 20 C 1.70774 * 91.12777 * 0.32815 * 19 18 17 21 21 C 1.50699 * 124.71905 * 179.77020 * 20 19 18 22 22 H 1.08995 * 110.33242 * 197.29208 * 21 20 19 23 23 C 1.54484 * 110.37227 * 75.04014 * 21 20 19 24 24 C 1.54510 * 104.05847 * 217.18886 * 23 21 20 25 25 C 1.54473 * 104.06761 * 0.02562 * 24 23 21 26 26 O 1.44426 * 104.80250 * 23.97743 * 25 24 23 27 27 N 1.28646 * 110.56021 * 359.80659 * 20 19 18 28 28 H 1.09001 * 109.47484 * 60.00192 * 1 2 3 29 29 H 1.09006 * 109.47502 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46931 * 299.99574 * 1 2 3 31 31 H 1.09000 * 109.47024 * 120.00076 * 2 1 3 32 32 H 1.08999 * 109.46694 * 239.99709 * 2 1 3 33 33 H 1.08998 * 109.46926 * 210.00389 * 4 3 2 34 34 H 1.09006 * 109.46516 * 330.00177 * 4 3 2 35 35 H 1.08998 * 109.47249 * 300.00567 * 5 4 3 36 36 H 1.09006 * 109.46697 * 59.99973 * 5 4 3 37 37 H 0.97003 * 119.99603 * 0.02562 * 6 5 4 38 38 H 0.96990 * 120.00459 * 179.97438 * 10 9 7 39 39 H 1.08004 * 125.58290 * 0.02562 * 18 17 15 40 40 H 1.08996 * 110.50945 * 335.83500 * 23 21 20 41 41 H 1.09001 * 110.50660 * 98.40920 * 23 21 20 42 42 H 1.09004 * 110.50538 * 118.64952 * 24 23 21 43 43 H 1.09003 * 110.50691 * 241.21434 * 24 23 21 44 44 H 1.08994 * 110.37531 * 142.80813 * 25 24 23 45 45 H 1.08996 * 110.37287 * 265.03893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4240 2.0147 -1.2571 5 6 1.2178 2.7116 -1.8897 6 7 1.6233 3.3446 -3.1470 7 6 0.7052 4.0326 -3.8946 8 1 -0.3180 4.1083 -3.5574 9 6 1.0896 4.6328 -5.0857 10 7 2.3365 4.5402 -5.4969 11 14 -0.1626 5.5720 -6.1051 12 1 -0.1786 6.9952 -5.6816 13 1 0.2045 5.4871 -7.5415 14 1 -1.5096 4.9802 -5.9027 15 6 2.0943 2.0691 1.1565 16 8 2.4182 3.2415 1.1466 17 6 1.7852 1.4013 2.4320 18 6 1.8086 2.0382 3.6246 19 16 1.3908 0.9251 4.8528 20 6 1.2185 -0.3279 3.7054 21 6 0.8363 -1.7477 4.0358 22 1 1.0854 -2.4098 3.2065 23 6 -0.6712 -1.8370 4.3612 24 6 -0.7483 -2.8780 5.5004 25 6 0.7217 -3.2939 5.7290 26 8 1.5005 -2.1785 5.2440 27 7 1.4610 0.1086 2.5198 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 3.2049 2.7488 -1.0586 34 1 2.8044 1.2553 -1.9404 35 1 0.4369 1.9775 -2.0882 36 1 0.8373 3.4709 -1.2063 37 1 2.5423 3.2763 -3.4500 38 1 2.6051 4.9593 -6.3294 39 1 2.0492 3.0801 3.7759 40 1 -1.0466 -0.8715 4.6999 41 1 -1.2303 -2.1789 3.4901 42 1 -1.1619 -2.4269 6.4024 43 1 -1.3473 -3.7356 5.1942 44 1 0.9099 -3.4550 6.7905 45 1 0.9535 -4.1956 5.1622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699181876.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -28.150453 kcal Electronic energy + Delta-G solvation = -27138.385645 eV Core-core repulsion = 23283.008035 eV Total energy + Delta-G solvation = -3855.377610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94975 -40.55296 -39.61926 -37.66603 -36.34169 -33.62503 -33.23353 -32.56738 -31.61346 -29.78076 -29.55949 -26.97398 -25.52514 -24.80820 -23.85251 -23.08531 -22.47299 -21.61767 -20.59761 -19.60092 -19.08944 -17.85450 -17.42540 -17.22404 -16.93468 -16.70691 -16.46494 -16.17881 -15.68719 -15.56652 -15.16193 -15.03227 -14.81219 -14.77570 -14.66311 -14.49963 -13.86393 -13.74139 -13.30030 -13.07093 -12.90544 -12.78609 -12.69944 -12.67281 -12.57257 -12.45834 -12.21475 -12.14561 -12.03581 -11.87994 -11.59318 -11.29549 -11.00038 -10.92639 -10.68175 -10.50875 -10.02129 -9.68465 -9.09384 -7.99760 -5.31065 -0.60767 0.16224 0.55356 0.74970 1.43944 1.47449 1.55693 1.88953 2.14019 2.43986 2.54100 3.20524 3.32866 3.49096 3.65419 3.88137 3.99510 4.00576 4.04811 4.10489 4.17913 4.20186 4.27383 4.36840 4.41152 4.46515 4.52135 4.53723 4.70440 4.77565 4.81191 4.90580 5.01021 5.02095 5.08819 5.10495 5.13226 5.19684 5.40787 5.44382 5.58582 5.76118 6.18338 6.21707 6.38345 6.98378 7.27340 7.97877 8.24893 9.23572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023386 B = 0.002284 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.024858 B =12256.365016 C =12740.805605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.087 3.913 3 N -0.587 5.587 4 C 0.121 3.879 5 C 0.153 3.847 6 N -0.742 5.742 7 C -0.252 4.252 8 H 0.071 0.929 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.980 3.020 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.580 3.420 16 O -0.576 6.576 17 C -0.004 4.004 18 C -0.241 4.241 19 S 0.318 5.682 20 C 0.007 3.993 21 C 0.153 3.847 22 H 0.109 0.891 23 C -0.146 4.146 24 C -0.149 4.149 25 C 0.039 3.961 26 O -0.387 6.387 27 N -0.431 5.431 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.133 0.867 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.029 0.971 36 H -0.003 1.003 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.191 0.809 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 -21.715 29.401 37.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 N -0.318 5.318 4 C -0.002 4.002 5 C 0.025 3.975 6 N -0.385 5.385 7 C -0.383 4.383 8 H 0.089 0.911 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.808 3.192 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.367 3.633 16 O -0.456 6.456 17 C -0.140 4.140 18 C -0.384 4.384 19 S 0.577 5.423 20 C -0.271 4.271 21 C 0.092 3.908 22 H 0.127 0.873 23 C -0.185 4.185 24 C -0.186 4.186 25 C -0.037 4.037 26 O -0.306 6.306 27 N -0.148 5.148 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.208 0.792 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.931 -21.305 30.082 37.337 hybrid contribution 0.061 1.491 -2.118 2.590 sum -5.870 -19.815 27.965 34.772 Atomic orbital electron populations 1.22012 0.95539 1.02894 1.00299 1.22483 0.95213 0.79956 1.05797 1.47865 1.62971 1.15512 1.05408 1.21475 0.96411 0.97789 0.84549 1.20938 0.95907 0.94044 0.86580 1.42386 1.10316 1.63604 1.22227 1.19570 0.92122 1.25277 1.01365 0.91078 1.25654 0.98589 1.02711 0.99652 1.69819 1.17547 1.50408 1.23940 0.85059 0.78395 0.78258 0.77526 1.21422 1.21457 1.19311 1.17630 0.77084 0.85135 0.83446 1.90812 1.50443 1.17028 1.87350 1.20024 1.09475 0.90232 0.94221 1.26974 1.06091 1.08228 0.97113 1.82647 1.56195 0.95669 1.07786 1.27320 1.04706 1.02590 0.92476 1.21354 0.92835 0.86380 0.90224 0.87328 1.23061 0.93312 1.01301 1.00802 1.22962 0.97351 0.99522 0.98798 1.23686 0.89616 0.88860 1.01539 1.89156 1.51607 1.50392 1.39478 1.67018 1.14001 1.10876 1.22948 0.94658 0.89139 0.93977 0.85025 0.89871 0.91857 0.88355 0.95294 0.98481 0.79180 0.93712 0.79216 0.90668 0.88287 0.89652 0.88337 0.87249 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.73 71.98 0.70 -2.88 16 2 C 0.09 2.20 5.76 86.38 0.50 2.69 16 3 N -0.59 -19.62 2.49 -825.87 -2.06 -21.68 16 4 C 0.12 4.68 5.52 86.38 0.48 5.16 16 5 C 0.15 7.11 6.58 86.38 0.57 7.67 16 6 N -0.74 -41.38 5.60 -343.47 -1.92 -43.30 16 7 C -0.25 -15.12 9.99 84.03 0.84 -14.28 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 10 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 11 Si 0.98 48.00 29.55 68.60 2.03 50.02 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.58 20.82 7.57 86.62 0.66 21.47 16 16 O -0.58 -25.28 16.34 -4.13 -0.07 -25.35 16 17 C 0.00 -0.12 6.23 40.56 0.25 0.13 16 18 C -0.24 -5.50 10.62 67.12 0.71 -4.79 16 19 S 0.32 4.84 22.69 -56.49 -1.28 3.55 16 20 C 0.01 0.13 6.26 88.57 0.55 0.68 16 21 C 0.15 1.84 3.82 30.35 0.12 1.96 16 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 23 C -0.15 -1.12 6.62 31.61 0.21 -0.91 16 24 C -0.15 -0.58 7.09 31.61 0.22 -0.36 16 25 C 0.04 0.23 7.63 72.48 0.55 0.78 16 26 O -0.39 -4.93 11.12 -148.98 -1.66 -6.59 16 27 N -0.43 -9.64 5.68 -180.83 -1.03 -10.66 16 28 H 0.03 1.00 6.84 -2.39 -0.02 0.98 16 29 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.04 1.08 7.16 -2.39 -0.02 1.06 16 31 H 0.13 3.06 5.01 -3.29 -0.02 3.04 16 32 H 0.08 1.90 7.81 -2.39 -0.02 1.88 16 33 H 0.06 2.71 7.49 -2.39 -0.02 2.69 16 34 H 0.10 3.39 7.85 -2.38 -0.02 3.38 16 35 H 0.03 1.31 6.84 -2.39 -0.02 1.29 16 36 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 37 H 0.38 21.78 7.67 -92.71 -0.71 21.07 16 38 H 0.25 15.46 8.31 -92.72 -0.77 14.69 16 39 H 0.19 4.22 8.03 -2.91 -0.02 4.20 16 40 H 0.07 0.65 7.86 -2.39 -0.02 0.63 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 43 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -78.09 380.61 1.42 -76.67 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.30 Total: 25.06 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.83 Total: 13.36 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -4.73 Total: -136.72 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.72 Total: -31.94 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.02 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.28 Total: 3.55 kcal Total: -78.09 1.42 -76.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699181876.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.517 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds