Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 119.99892 * 2 1 4 4 C 1.53002 * 109.47035 * 269.99929 * 3 2 1 5 5 C 1.53000 * 109.47057 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47504 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00403 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99673 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00162 * 179.97438 * 7 6 5 10 10 N 1.31629 * 119.99818 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00188 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47116 * 90.00405 * 11 9 7 13 13 H 1.48505 * 109.46985 * 210.00500 * 11 9 7 14 14 H 1.48498 * 109.47021 * 329.99929 * 11 9 7 15 15 C 1.34781 * 119.99873 * 179.97438 * 2 1 3 16 16 O 1.21286 * 119.99837 * 180.02562 * 15 2 1 17 17 C 1.50699 * 120.00303 * 0.02562 * 15 2 1 18 18 C 1.53000 * 109.47188 * 179.97438 * 17 15 2 19 19 N 1.46503 * 109.46978 * 179.97438 * 18 17 15 20 20 C 1.34770 * 119.99738 * 180.02562 * 19 18 17 21 21 O 1.21634 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.47191 * 119.99817 * 180.02562 * 20 19 18 23 23 C 1.44425 * 123.46449 * 180.02562 * 22 20 19 24 24 C 1.32766 * 113.08895 * 179.97438 * 23 22 20 25 25 S 1.75505 * 110.57315 * 359.74176 * 24 23 22 26 26 C 1.36014 * 123.46276 * 0.02562 * 22 20 19 27 27 H 1.09005 * 109.47205 * 270.00087 * 1 2 3 28 28 H 1.08993 * 109.47428 * 30.00408 * 1 2 3 29 29 H 1.09001 * 109.46986 * 150.00066 * 1 2 3 30 30 H 1.08995 * 109.47383 * 29.99993 * 3 2 1 31 31 H 1.09004 * 109.47123 * 149.99829 * 3 2 1 32 32 H 1.09004 * 109.47034 * 299.99625 * 4 3 2 33 33 H 1.08993 * 109.47101 * 60.00465 * 4 3 2 34 34 H 1.09009 * 109.47004 * 300.00093 * 5 4 3 35 35 H 1.08998 * 109.47756 * 59.99439 * 5 4 3 36 36 H 0.97007 * 119.99381 * 359.97438 * 6 5 4 37 37 H 0.96995 * 119.99668 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47293 * 59.99474 * 17 15 2 39 39 H 1.09001 * 109.46582 * 300.00088 * 17 15 2 40 40 H 1.09005 * 109.47116 * 59.99933 * 18 17 15 41 41 H 1.08998 * 109.47094 * 299.99680 * 18 17 15 42 42 H 0.97004 * 119.99641 * 0.02562 * 19 18 17 43 43 H 1.08006 * 123.45781 * 0.02562 * 23 22 20 44 44 H 1.08001 * 124.71648 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.58647 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7103 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4616 3.4583 -2.8237 7 6 4.1347 4.6243 -3.0739 8 1 4.4862 5.2317 -2.2530 9 6 4.3660 5.0251 -4.3826 10 7 3.9379 4.2845 -5.3831 11 14 5.2847 6.6153 -4.7240 12 1 6.7404 6.3362 -4.8147 13 1 4.8109 7.1952 -6.0064 14 1 5.0330 7.5786 -3.6223 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4724 0.0005 18 6 2.3797 -3.6353 0.0005 19 7 1.6472 -4.9040 0.0011 20 6 2.3210 -6.0711 0.0018 21 8 3.5374 -6.0711 0.0014 22 6 1.5851 -7.3458 0.0018 23 6 2.2303 -8.6379 0.0030 24 6 1.3703 -9.6494 0.0034 25 16 -0.2810 -9.0548 0.0097 26 6 0.2274 -7.4280 0.0007 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 2.6292 3.7949 -0.9285 35 1 4.1704 2.9044 -0.9288 36 1 3.1462 2.9125 -3.5610 37 1 4.0993 4.5647 -6.2976 38 1 0.7590 -2.5303 -0.8896 39 1 0.7584 -2.5298 0.8903 40 1 3.0064 -3.5775 0.8905 41 1 3.0063 -3.5775 -0.8895 42 1 0.6771 -4.9040 0.0011 43 1 3.3025 -8.7681 0.0044 44 1 1.6482 -10.6930 0.0038 45 1 -0.4382 -6.5775 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699514573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -29.906169 kcal Electronic energy + Delta-G solvation = -25365.906086 eV Core-core repulsion = 21510.452343 eV Total energy + Delta-G solvation = -3855.453743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40781 -39.86782 -37.28879 -36.33364 -35.43589 -34.82957 -32.49901 -31.60080 -30.16273 -29.44698 -27.01425 -26.11440 -25.16336 -23.78809 -22.46481 -21.69093 -20.92801 -19.89298 -19.06695 -18.55210 -17.53216 -17.24274 -17.03893 -16.40180 -16.06467 -15.65393 -15.35073 -14.92543 -14.53963 -14.40094 -14.25666 -13.70280 -13.59862 -13.45556 -13.33801 -13.20377 -13.00563 -12.93298 -12.89563 -12.66066 -12.22229 -12.00454 -11.84708 -11.69733 -11.62602 -10.91453 -10.82692 -10.72979 -10.39251 -10.31102 -10.06773 -9.86053 -9.68289 -9.60148 -9.44232 -8.93129 -8.83479 -8.73012 -6.88218 -5.72711 -3.01377 0.25570 1.02185 1.39562 1.57027 2.49970 2.57208 3.01263 3.06483 3.46737 3.51367 3.53129 4.18011 4.28268 4.44596 4.57122 4.62785 4.65269 4.74060 4.84219 4.87377 5.03830 5.11259 5.24274 5.30792 5.40731 5.45608 5.56521 5.57912 5.59889 5.69614 5.71153 5.78716 5.91170 6.01541 6.08847 6.31342 6.40576 6.49133 6.88135 6.90524 7.07780 7.25860 7.73392 7.86235 8.06329 8.46267 9.57056 10.15663 10.50244 11.50401 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.001508 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.720120 B =18562.891125 C =19055.613509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.615 5.615 3 C 0.118 3.882 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.514 3.486 16 O -0.528 6.528 17 C -0.152 4.152 18 C 0.134 3.866 19 N -0.727 5.727 20 C 0.576 3.424 21 O -0.528 6.528 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.235 4.235 25 S 0.186 5.814 26 C -0.215 4.215 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.397 0.603 43 H 0.156 0.844 44 H 0.171 0.829 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 -28.455 15.473 36.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.377 5.377 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.301 3.699 16 O -0.404 6.404 17 C -0.192 4.192 18 C 0.010 3.990 19 N -0.379 5.379 20 C 0.361 3.639 21 O -0.405 6.405 22 C -0.170 4.170 23 C -0.114 4.114 24 C -0.370 4.370 25 S 0.451 5.549 26 C -0.353 4.353 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.231 0.769 43 H 0.173 0.827 44 H 0.188 0.812 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.775 -28.981 15.516 36.906 hybrid contribution 1.062 1.569 -0.610 1.991 sum -15.712 -27.412 14.906 34.935 Atomic orbital electron populations 1.21830 0.79587 1.03609 1.01707 1.47894 1.07009 1.06392 1.73562 1.21517 0.97537 0.83295 0.98074 1.22052 1.01038 0.99035 0.95635 1.20544 0.96069 0.91857 0.88742 1.42349 1.68334 1.25967 1.01086 1.19257 1.27785 0.98154 0.91830 0.91132 1.24757 1.01735 0.99103 0.95556 1.69671 1.51554 1.38971 0.98141 0.86163 0.79559 0.83070 0.77253 1.21694 1.21785 1.20758 1.20262 0.88000 0.85025 0.76601 1.90784 1.13706 1.87170 1.48731 1.21835 0.99656 0.92865 1.04856 1.21094 0.93534 0.79757 1.04590 1.45808 1.10122 1.05804 1.76198 1.17574 0.87011 0.82856 0.76483 1.90846 1.13244 1.87404 1.48969 1.20341 0.92178 0.94628 1.09815 1.21185 1.01503 0.89282 0.99465 1.25552 0.95964 1.03744 1.11723 1.83127 1.07299 0.95347 1.69107 1.25680 0.98791 1.03792 1.07034 0.92527 0.90456 0.91182 0.90441 0.89659 0.91560 0.92036 0.96418 0.96176 0.78340 0.93553 0.88134 0.88321 0.90189 0.90021 0.76862 0.82691 0.81176 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.24 59.85 0.61 1.12 16 2 N -0.62 -6.80 2.87 -181.57 -0.52 -7.32 16 3 C 0.12 1.58 5.41 -4.04 -0.02 1.55 16 4 C -0.14 -2.35 5.65 -26.73 -0.15 -2.50 16 5 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 6 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 11 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.51 6.30 7.67 -10.98 -0.08 6.21 16 16 O -0.53 -9.01 15.56 5.55 0.09 -8.92 16 17 C -0.15 -1.13 4.37 -27.88 -0.12 -1.25 16 18 C 0.13 1.33 4.96 -4.04 -0.02 1.31 16 19 N -0.73 -5.72 5.52 -61.46 -0.34 -6.06 16 20 C 0.58 6.20 7.79 -12.63 -0.10 6.10 16 21 O -0.53 -8.05 16.80 5.25 0.09 -7.96 16 22 C -0.15 -1.24 5.98 -104.63 -0.63 -1.87 16 23 C -0.09 -0.66 10.10 -39.02 -0.39 -1.06 16 24 C -0.23 -1.28 11.12 28.86 0.32 -0.95 16 25 S 0.19 0.80 23.02 -107.50 -2.48 -1.68 16 26 C -0.21 -1.12 10.38 29.93 0.31 -0.81 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.07 0.32 6.44 -51.93 -0.33 -0.01 16 30 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.09 1.27 7.42 -51.93 -0.39 0.88 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.71 7.67 -40.82 -0.31 10.40 16 37 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.10 0.54 7.40 -51.93 -0.38 0.16 16 39 H 0.10 0.46 8.11 -51.93 -0.42 0.04 16 40 H 0.08 0.95 8.10 -51.93 -0.42 0.52 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.40 1.64 6.97 -40.82 -0.28 1.36 16 43 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.17 0.39 7.01 -52.49 -0.37 0.02 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -38.58 395.07 -9.06 -47.65 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.68 Total: 5.21 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.54 Total: 3.43 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.47 Total: -61.64 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.17 Total: -16.88 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.48 Total: -1.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.58 -9.06 -47.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699514573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.741 kcal (2) G-P(sol) polarization free energy of solvation -38.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds