Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46494 * 119.99892 * 2 1 4 4 C 1.53002 * 109.47035 * 269.99929 * 3 2 1 5 5 C 1.53000 * 109.47057 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47504 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00403 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99673 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00162 * 179.97438 * 7 6 5 10 10 N 1.31629 * 119.99818 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00188 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47116 * 90.00405 * 11 9 7 13 13 H 1.48505 * 109.46985 * 210.00500 * 11 9 7 14 14 H 1.48498 * 109.47021 * 329.99929 * 11 9 7 15 15 C 1.34781 * 119.99873 * 179.97438 * 2 1 3 16 16 O 1.21286 * 119.99837 * 180.02562 * 15 2 1 17 17 C 1.50699 * 120.00303 * 0.02562 * 15 2 1 18 18 C 1.53000 * 109.47188 * 179.97438 * 17 15 2 19 19 N 1.46503 * 109.46978 * 179.97438 * 18 17 15 20 20 C 1.34770 * 119.99738 * 180.02562 * 19 18 17 21 21 O 1.21634 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.47191 * 119.99817 * 180.02562 * 20 19 18 23 23 C 1.44425 * 123.46449 * 180.02562 * 22 20 19 24 24 C 1.32766 * 113.08895 * 179.97438 * 23 22 20 25 25 S 1.75505 * 110.57315 * 359.74176 * 24 23 22 26 26 C 1.36014 * 123.46276 * 0.02562 * 22 20 19 27 27 H 1.09005 * 109.47205 * 270.00087 * 1 2 3 28 28 H 1.08993 * 109.47428 * 30.00408 * 1 2 3 29 29 H 1.09001 * 109.46986 * 150.00066 * 1 2 3 30 30 H 1.08995 * 109.47383 * 29.99993 * 3 2 1 31 31 H 1.09004 * 109.47123 * 149.99829 * 3 2 1 32 32 H 1.09004 * 109.47034 * 299.99625 * 4 3 2 33 33 H 1.08993 * 109.47101 * 60.00465 * 4 3 2 34 34 H 1.09009 * 109.47004 * 300.00093 * 5 4 3 35 35 H 1.08998 * 109.47756 * 59.99439 * 5 4 3 36 36 H 0.97007 * 119.99381 * 359.97438 * 6 5 4 37 37 H 0.96995 * 119.99668 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.47293 * 59.99474 * 17 15 2 39 39 H 1.09001 * 109.46582 * 300.00088 * 17 15 2 40 40 H 1.09005 * 109.47116 * 59.99933 * 18 17 15 41 41 H 1.08998 * 109.47094 * 299.99680 * 18 17 15 42 42 H 0.97004 * 119.99641 * 0.02562 * 19 18 17 43 43 H 1.08006 * 123.45781 * 0.02562 * 23 22 20 44 44 H 1.08001 * 124.71648 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.58647 * 359.97438 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7103 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4616 3.4583 -2.8237 7 6 4.1347 4.6243 -3.0739 8 1 4.4862 5.2317 -2.2530 9 6 4.3660 5.0251 -4.3826 10 7 3.9379 4.2845 -5.3831 11 14 5.2847 6.6153 -4.7240 12 1 6.7404 6.3362 -4.8147 13 1 4.8109 7.1952 -6.0064 14 1 5.0330 7.5786 -3.6223 15 6 2.1389 -1.1673 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4724 0.0005 18 6 2.3797 -3.6353 0.0005 19 7 1.6472 -4.9040 0.0011 20 6 2.3210 -6.0711 0.0018 21 8 3.5374 -6.0711 0.0014 22 6 1.5851 -7.3458 0.0018 23 6 2.2303 -8.6379 0.0030 24 6 1.3703 -9.6494 0.0034 25 16 -0.2810 -9.0548 0.0097 26 6 0.2274 -7.4280 0.0007 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 2.6292 3.7949 -0.9285 35 1 4.1704 2.9044 -0.9288 36 1 3.1462 2.9125 -3.5610 37 1 4.0993 4.5647 -6.2976 38 1 0.7590 -2.5303 -0.8896 39 1 0.7584 -2.5298 0.8903 40 1 3.0064 -3.5775 0.8905 41 1 3.0063 -3.5775 -0.8895 42 1 0.6771 -4.9040 0.0011 43 1 3.3025 -8.7681 0.0044 44 1 1.6482 -10.6930 0.0038 45 1 -0.4382 -6.5775 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699514573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = -58.980087 kcal Electronic energy + Delta-G solvation = -25367.166826 eV Core-core repulsion = 21510.452343 eV Total energy + Delta-G solvation = -3856.714483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25541 -40.73814 -37.87111 -37.58653 -36.45378 -36.30156 -34.14430 -32.63406 -31.46804 -30.32909 -27.91443 -27.16190 -26.14371 -25.06860 -23.81585 -22.50063 -22.37817 -20.61981 -19.84321 -19.17620 -19.03754 -18.31054 -17.94212 -17.26730 -17.09119 -16.53076 -16.46179 -16.21479 -15.85959 -15.46122 -15.40102 -15.13290 -14.87608 -14.39960 -14.15331 -13.94324 -13.93402 -13.66885 -13.54287 -13.38337 -13.36311 -13.25552 -12.84926 -12.77310 -12.68766 -12.46006 -12.41308 -12.10908 -12.07390 -11.83335 -11.80580 -11.15481 -10.97042 -10.86461 -10.31751 -9.99018 -9.67313 -9.34280 -9.04986 -7.98433 -5.28581 -0.21150 0.63974 0.95812 0.97751 1.45207 1.48412 1.56588 1.59024 1.78583 2.29256 2.30483 2.54540 3.35019 3.50964 3.74302 3.85621 3.86423 3.97466 4.01370 4.06883 4.24820 4.30753 4.34862 4.46363 4.48259 4.52601 4.61840 4.71515 4.75175 4.81507 4.82543 4.88776 4.91338 5.02745 5.14384 5.24707 5.27670 5.28486 5.29432 5.45823 5.54591 6.23677 6.38078 6.47841 7.13463 7.17731 7.29170 8.04308 8.27849 9.25399 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.001508 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.720120 B =18562.891125 C =19055.613509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.613 5.613 3 C 0.126 3.874 4 C -0.121 4.121 5 C 0.153 3.847 6 N -0.749 5.749 7 C -0.251 4.251 8 H 0.077 0.923 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.979 3.021 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.503 3.497 16 O -0.591 6.591 17 C -0.133 4.133 18 C 0.139 3.861 19 N -0.705 5.705 20 C 0.570 3.430 21 O -0.590 6.590 22 C -0.186 4.186 23 C -0.117 4.117 24 C -0.236 4.236 25 S 0.249 5.751 26 C -0.201 4.201 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.011 0.989 36 H 0.372 0.628 37 H 0.252 0.748 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.053 0.947 41 H 0.045 0.955 42 H 0.419 0.581 43 H 0.136 0.864 44 H 0.190 0.810 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.005 -28.805 16.659 39.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.345 5.345 3 C 0.002 3.998 4 C -0.160 4.160 5 C 0.026 3.974 6 N -0.392 5.392 7 C -0.383 4.383 8 H 0.095 0.905 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.807 3.193 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.190 1.190 15 C 0.292 3.708 16 O -0.471 6.471 17 C -0.172 4.172 18 C 0.014 3.986 19 N -0.358 5.358 20 C 0.357 3.643 21 O -0.471 6.471 22 C -0.205 4.205 23 C -0.145 4.145 24 C -0.371 4.371 25 S 0.514 5.486 26 C -0.339 4.339 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.203 0.797 37 H 0.061 0.939 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.258 0.742 43 H 0.154 0.846 44 H 0.208 0.792 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -20.890 -29.327 16.752 39.713 hybrid contribution 2.196 1.588 -0.931 2.866 sum -18.694 -27.740 15.822 37.004 Atomic orbital electron populations 1.22200 0.76271 1.05116 1.03898 1.47995 1.08946 1.05041 1.72494 1.21293 0.97840 0.85410 0.95271 1.21853 1.00080 0.95940 0.98097 1.20721 0.96410 0.94237 0.85989 1.42602 1.68214 1.25392 1.02955 1.19700 1.27448 0.98898 0.92255 0.90461 1.25661 1.03150 1.02778 0.95402 1.69835 1.53158 1.40887 0.98301 0.85060 0.77824 0.79132 0.77259 1.21585 1.21805 1.19038 1.21148 0.87594 0.86767 0.75300 1.90765 1.16672 1.88105 1.51590 1.21786 0.98636 0.88448 1.08355 1.20827 0.94205 0.81823 1.01707 1.45542 1.11069 1.04315 1.74920 1.18109 0.86541 0.84319 0.75315 1.90807 1.15963 1.88291 1.52066 1.20141 0.93370 0.93281 1.13667 1.21190 1.01305 0.90288 1.01749 1.25850 0.96882 1.04295 1.10098 1.82987 1.05103 0.93622 1.66866 1.26106 0.97848 1.06026 1.03961 0.89911 0.90448 0.88333 0.87423 0.91855 0.94674 0.91136 0.94688 0.97096 0.79654 0.93915 0.84873 0.84033 0.92824 0.93630 0.74190 0.84582 0.79244 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.24 127.77 1.31 1.91 16 2 N -0.61 -12.36 2.87 -846.76 -2.43 -14.79 16 3 C 0.13 3.24 5.41 86.38 0.47 3.71 16 4 C -0.12 -4.10 5.65 30.59 0.17 -3.93 16 5 C 0.15 6.46 6.26 86.38 0.54 7.00 16 6 N -0.75 -40.59 5.60 -343.45 -1.92 -42.51 16 7 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 10 N -0.97 -61.53 13.06 21.65 0.28 -61.24 16 11 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 15 C 0.50 12.02 7.67 87.66 0.67 12.70 16 16 O -0.59 -21.40 15.56 -3.05 -0.05 -21.45 16 17 C -0.13 -1.64 4.37 29.85 0.13 -1.51 16 18 C 0.14 2.85 4.96 86.38 0.43 3.28 16 19 N -0.71 -10.57 5.52 -466.59 -2.58 -13.14 16 20 C 0.57 12.88 7.79 86.60 0.67 13.55 16 21 O -0.59 -19.94 16.80 -4.14 -0.07 -20.01 16 22 C -0.19 -3.01 5.98 -19.87 -0.12 -3.13 16 23 C -0.12 -1.90 10.10 22.67 0.23 -1.67 16 24 C -0.24 -2.26 11.12 66.64 0.74 -1.52 16 25 S 0.25 1.32 23.02 -56.49 -1.30 0.02 16 26 C -0.20 -1.52 10.38 67.30 0.70 -0.82 16 27 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.08 0.77 8.07 -2.39 -0.02 0.75 16 29 H 0.10 0.36 6.44 -2.39 -0.02 0.35 16 30 H 0.11 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.06 1.93 7.42 -2.38 -0.02 1.92 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.37 21.41 7.67 -92.70 -0.71 20.70 16 37 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.13 0.86 7.40 -2.39 -0.02 0.84 16 39 H 0.14 0.62 8.11 -2.39 -0.02 0.60 16 40 H 0.05 1.38 8.10 -2.38 -0.02 1.36 16 41 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.42 2.13 6.97 -92.71 -0.65 1.49 16 43 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.19 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.20 -0.05 7.01 -2.91 -0.02 -0.07 16 Total: -1.00 -91.43 395.07 0.87 -90.56 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.34 Total: 21.59 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 7.25 Total: 11.50 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -6.65 Total: -131.69 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.12 Total: -41.46 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.30 Total: 0.02 kcal Total: -91.43 0.87 -90.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699514573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.581 kcal (2) G-P(sol) polarization free energy of solvation -91.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds