Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00210 * 2 1 4 4 C 1.52998 * 109.47100 * 90.00379 * 3 2 1 5 5 C 1.53005 * 109.47336 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47034 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99609 * 180.27834 * 6 5 4 8 8 O 1.21694 * 120.00164 * 354.97354 * 7 6 5 9 9 C 1.46679 * 119.99785 * 174.98211 * 7 6 5 10 10 C 1.37876 * 126.23518 * 4.96408 * 9 7 6 11 11 C 1.39836 * 107.08188 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.87108 * 359.97438 * 11 10 9 13 13 N 1.35536 * 108.86938 * 359.73813 * 12 11 10 14 14 C 1.46497 * 125.67923 * 180.30011 * 13 12 11 15 15 C 1.34780 * 119.99438 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99786 * 180.02562 * 15 2 1 17 17 C 1.50696 * 120.00547 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47413 * 180.02562 * 17 15 2 19 19 C 1.76202 * 99.99896 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00013 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99748 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99896 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99874 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46672 * 90.00603 * 23 21 19 25 25 H 1.48498 * 109.46716 * 209.99999 * 23 21 19 26 26 H 1.48498 * 109.47442 * 330.00214 * 23 21 19 27 27 H 1.09001 * 109.46871 * 89.99778 * 1 2 3 28 28 H 1.08998 * 109.47340 * 209.99971 * 1 2 3 29 29 H 1.09002 * 109.47087 * 329.99863 * 1 2 3 30 30 H 1.08995 * 109.47782 * 329.99910 * 3 2 1 31 31 H 1.09005 * 109.47435 * 209.99779 * 3 2 1 32 32 H 1.09004 * 109.47512 * 59.99695 * 4 3 2 33 33 H 1.09006 * 109.46954 * 299.99730 * 4 3 2 34 34 H 1.08998 * 109.46851 * 59.99774 * 5 4 3 35 35 H 1.08992 * 109.46741 * 299.99665 * 5 4 3 36 36 H 0.97001 * 120.00308 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.45769 * 359.96853 * 10 9 7 38 38 H 1.08005 * 126.06526 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.56742 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47357 * 274.74220 * 14 13 12 41 41 H 1.08993 * 109.47382 * 34.74618 * 14 13 12 42 42 H 1.09001 * 109.47157 * 154.74738 * 14 13 12 43 43 H 1.09002 * 109.47231 * 300.00376 * 17 15 2 44 44 H 1.09004 * 109.46844 * 59.99753 * 17 15 2 45 45 H 0.96997 * 120.00099 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7102 1.4425 5 6 3.2171 3.0356 1.4425 6 7 3.4608 3.4587 2.8238 7 6 4.1179 4.6094 3.0700 8 8 4.5887 5.2504 2.1489 9 6 4.2659 5.0889 4.4483 10 6 3.8714 4.4233 5.5895 11 6 4.2007 5.2399 6.6759 12 6 4.7784 6.3647 6.1903 13 7 4.8295 6.2827 4.8384 14 6 5.3883 7.2972 3.9413 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1674 -0.0001 17 6 1.3853 -2.4724 -0.0005 18 16 2.5614 -3.8482 -0.0005 19 6 1.4412 -5.2083 -0.0013 20 1 0.3760 -5.0305 -0.0012 21 6 1.9280 -6.5082 -0.0010 22 7 1.0912 -7.5242 -0.0010 23 14 3.7705 -6.8156 -0.0004 24 1 4.2582 -6.8969 1.3998 25 1 4.0593 -8.0931 -0.7002 26 1 4.4585 -5.7012 -0.7004 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6086 2.0283 -0.5138 31 1 3.1500 1.1383 -0.5138 32 1 3.0417 0.9505 1.9563 33 1 1.5002 1.8406 1.9564 34 1 2.6277 3.7950 0.9289 35 1 4.1694 2.9056 0.9286 36 1 3.1454 2.9129 3.5610 37 1 3.3965 3.4544 5.6356 38 1 4.0263 5.0134 7.7174 39 1 5.1425 7.1903 6.7837 40 1 4.6287 8.0479 3.7237 41 1 6.2437 7.7739 4.4199 42 1 5.7084 6.8245 3.0127 43 1 0.7589 -2.5303 0.8897 44 1 0.7583 -2.5298 -0.8903 45 1 1.4313 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703541788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -22.947171 kcal Electronic energy + Delta-G solvation = -25596.124562 eV Core-core repulsion = 21740.972583 eV Total energy + Delta-G solvation = -3855.151979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.71741 -39.73319 -39.29716 -36.31887 -35.16286 -33.32775 -32.45082 -32.25876 -30.01994 -29.00398 -27.06872 -26.86167 -25.69407 -25.22890 -22.86156 -22.06364 -20.86987 -19.93977 -19.27339 -18.23949 -17.70915 -16.85278 -16.46346 -16.18714 -16.10308 -15.55495 -15.51161 -15.38534 -14.95957 -14.35568 -14.29166 -13.88401 -13.74378 -13.63320 -13.43959 -13.17736 -12.81964 -12.77816 -12.73389 -12.64464 -12.52723 -12.37095 -12.28659 -11.94721 -11.87321 -11.27317 -11.06613 -11.01728 -10.60328 -10.31626 -9.86777 -9.51852 -9.46078 -9.12617 -9.01418 -8.68576 -8.59287 -8.50515 -6.93450 -6.30049 -4.01953 1.11274 2.24369 2.37434 2.67934 2.87691 3.03034 3.06687 3.21925 3.32508 3.49983 3.58403 4.32064 4.38051 4.45517 4.54265 4.61052 4.69039 4.72557 4.82843 4.91971 5.00568 5.02540 5.05041 5.08697 5.09250 5.24673 5.27316 5.30601 5.39728 5.54270 5.62437 5.68164 5.75218 5.80521 5.84862 5.92261 5.98852 6.07198 6.36897 6.51595 6.60009 6.81062 7.15193 7.38304 7.85214 7.92926 8.39499 8.40355 9.16191 10.79104 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.001804 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.482350 B =15515.675537 C =16156.948841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.122 3.878 4 C -0.149 4.149 5 C 0.126 3.874 6 N -0.716 5.716 7 C 0.590 3.410 8 O -0.551 6.551 9 C -0.055 4.055 10 C -0.140 4.140 11 C -0.207 4.207 12 C 0.013 3.987 13 N -0.411 5.411 14 C 0.060 3.940 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.404 0.596 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 30.017 9.620 31.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.359 5.359 3 C -0.001 4.001 4 C -0.188 4.188 5 C 0.002 3.998 6 N -0.368 5.368 7 C 0.378 3.622 8 O -0.431 6.431 9 C -0.169 4.169 10 C -0.166 4.166 11 C -0.231 4.231 12 C -0.122 4.122 13 N -0.084 5.084 14 C -0.081 4.081 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.240 0.760 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.625 30.528 8.643 31.934 hybrid contribution -1.081 -0.626 0.551 1.365 sum 2.544 29.901 9.194 31.386 Atomic orbital electron populations 1.21813 0.79366 1.03290 1.02030 1.47820 1.06971 1.05525 1.75605 1.21222 0.98472 0.84978 0.95477 1.22192 1.00970 0.96474 0.99191 1.21291 1.00777 0.95664 0.82049 1.45625 1.58365 1.23238 1.09545 1.16973 0.77865 0.80868 0.86505 1.90765 1.48996 1.57332 1.46017 1.20038 1.11954 0.90772 0.94094 1.21392 1.03951 1.00261 0.91017 1.20855 1.07566 0.95386 0.99308 1.22058 1.06159 1.01583 0.82400 1.43868 1.43306 1.14704 1.06480 1.22355 0.99196 0.90922 0.95579 1.20346 0.87951 0.84681 0.75177 1.90698 1.13685 1.86831 1.47788 1.23315 1.03088 0.95170 1.05602 1.84802 1.11964 0.97555 1.97416 1.22305 0.94850 0.90892 1.58832 0.89399 1.24713 0.98533 0.94877 0.93166 1.69935 1.34795 0.98882 1.48031 0.86737 0.85362 0.79834 0.79939 1.19207 1.19940 1.15925 0.92476 0.90499 0.91260 0.90403 0.89408 0.90263 0.91032 0.91191 0.90765 0.76046 0.83782 0.83877 0.81390 0.90683 0.89965 0.87300 0.88533 0.88496 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.24 59.85 0.61 1.32 16 2 N -0.62 -7.74 2.87 -181.58 -0.52 -8.26 16 3 C 0.12 1.24 5.41 -4.05 -0.02 1.22 16 4 C -0.15 -1.32 5.65 -26.73 -0.15 -1.47 16 5 C 0.13 1.12 5.68 -4.04 -0.02 1.10 16 6 N -0.72 -6.41 5.54 -61.62 -0.34 -6.75 16 7 C 0.59 6.56 7.77 -12.85 -0.10 6.46 16 8 O -0.55 -7.55 14.57 5.19 0.08 -7.48 16 9 C -0.06 -0.55 6.89 -81.97 -0.56 -1.12 16 10 C -0.14 -1.18 10.36 -39.12 -0.41 -1.58 16 11 C -0.21 -1.56 10.81 -39.98 -0.43 -1.99 16 12 C 0.01 0.10 11.38 -16.91 -0.19 -0.10 16 13 N -0.41 -3.59 3.16 -120.24 -0.38 -3.97 16 14 C 0.06 0.40 10.76 59.85 0.64 1.05 16 15 C 0.53 9.23 7.69 -10.99 -0.08 9.15 16 16 O -0.52 -10.83 15.44 5.56 0.09 -10.75 16 17 C -0.12 -2.30 4.71 36.00 0.17 -2.13 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 23 Si 0.86 21.70 27.74 -169.99 -4.71 16.98 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 29 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.08 0.58 8.07 -51.93 -0.42 0.17 16 31 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 2.80 7.37 -40.82 -0.30 2.50 16 37 H 0.14 0.91 7.45 -52.49 -0.39 0.51 16 38 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.11 0.95 5.99 -51.93 -0.31 0.64 16 43 H 0.10 1.70 7.40 -51.91 -0.38 1.31 16 44 H 0.10 1.73 8.11 -51.91 -0.42 1.31 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -36.91 391.45 -8.20 -45.11 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.75 Total: 0.39 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.33 Total: 0.02 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.47 Total: -44.57 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.16 Total: -18.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.91 -8.20 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703541788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.159 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds