Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46492 * 120.00210 * 2 1 4 4 C 1.52998 * 109.47100 * 90.00379 * 3 2 1 5 5 C 1.53005 * 109.47336 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47034 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99609 * 180.27834 * 6 5 4 8 8 O 1.21694 * 120.00164 * 354.97354 * 7 6 5 9 9 C 1.46679 * 119.99785 * 174.98211 * 7 6 5 10 10 C 1.37876 * 126.23518 * 4.96408 * 9 7 6 11 11 C 1.39836 * 107.08188 * 180.02562 * 10 9 7 12 12 C 1.35451 * 107.87108 * 359.97438 * 11 10 9 13 13 N 1.35536 * 108.86938 * 359.73813 * 12 11 10 14 14 C 1.46497 * 125.67923 * 180.30011 * 13 12 11 15 15 C 1.34780 * 119.99438 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99786 * 180.02562 * 15 2 1 17 17 C 1.50696 * 120.00547 * 359.97438 * 15 2 1 18 18 S 1.80999 * 109.47413 * 180.02562 * 17 15 2 19 19 C 1.76202 * 99.99896 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00013 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99748 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99896 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99874 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46672 * 90.00603 * 23 21 19 25 25 H 1.48498 * 109.46716 * 209.99999 * 23 21 19 26 26 H 1.48498 * 109.47442 * 330.00214 * 23 21 19 27 27 H 1.09001 * 109.46871 * 89.99778 * 1 2 3 28 28 H 1.08998 * 109.47340 * 209.99971 * 1 2 3 29 29 H 1.09002 * 109.47087 * 329.99863 * 1 2 3 30 30 H 1.08995 * 109.47782 * 329.99910 * 3 2 1 31 31 H 1.09005 * 109.47435 * 209.99779 * 3 2 1 32 32 H 1.09004 * 109.47512 * 59.99695 * 4 3 2 33 33 H 1.09006 * 109.46954 * 299.99730 * 4 3 2 34 34 H 1.08998 * 109.46851 * 59.99774 * 5 4 3 35 35 H 1.08992 * 109.46741 * 299.99665 * 5 4 3 36 36 H 0.97001 * 120.00308 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.45769 * 359.96853 * 10 9 7 38 38 H 1.08005 * 126.06526 * 180.02562 * 11 10 9 39 39 H 1.07995 * 125.56742 * 179.97438 * 12 11 10 40 40 H 1.08996 * 109.47357 * 274.74220 * 14 13 12 41 41 H 1.08993 * 109.47382 * 34.74618 * 14 13 12 42 42 H 1.09001 * 109.47157 * 154.74738 * 14 13 12 43 43 H 1.09002 * 109.47231 * 300.00376 * 17 15 2 44 44 H 1.09004 * 109.46844 * 59.99753 * 17 15 2 45 45 H 0.96997 * 120.00099 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4526 1.7102 1.4425 5 6 3.2171 3.0356 1.4425 6 7 3.4608 3.4587 2.8238 7 6 4.1179 4.6094 3.0700 8 8 4.5887 5.2504 2.1489 9 6 4.2659 5.0889 4.4483 10 6 3.8714 4.4233 5.5895 11 6 4.2007 5.2399 6.6759 12 6 4.7784 6.3647 6.1903 13 7 4.8295 6.2827 4.8384 14 6 5.3883 7.2972 3.9413 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1674 -0.0001 17 6 1.3853 -2.4724 -0.0005 18 16 2.5614 -3.8482 -0.0005 19 6 1.4412 -5.2083 -0.0013 20 1 0.3760 -5.0305 -0.0012 21 6 1.9280 -6.5082 -0.0010 22 7 1.0912 -7.5242 -0.0010 23 14 3.7705 -6.8156 -0.0004 24 1 4.2582 -6.8969 1.3998 25 1 4.0593 -8.0931 -0.7002 26 1 4.4585 -5.7012 -0.7004 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6086 2.0283 -0.5138 31 1 3.1500 1.1383 -0.5138 32 1 3.0417 0.9505 1.9563 33 1 1.5002 1.8406 1.9564 34 1 2.6277 3.7950 0.9289 35 1 4.1694 2.9056 0.9286 36 1 3.1454 2.9129 3.5610 37 1 3.3965 3.4544 5.6356 38 1 4.0263 5.0134 7.7174 39 1 5.1425 7.1903 6.7837 40 1 4.6287 8.0479 3.7237 41 1 6.2437 7.7739 4.4199 42 1 5.7084 6.8245 3.0127 43 1 0.7589 -2.5303 0.8897 44 1 0.7583 -2.5298 -0.8903 45 1 1.4313 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703541788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -48.250605 kcal Electronic energy + Delta-G solvation = -25597.221801 eV Core-core repulsion = 21740.972583 eV Total energy + Delta-G solvation = -3856.249218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32153 -40.91714 -40.14009 -37.32568 -36.13619 -34.66925 -33.95157 -33.10467 -31.03932 -29.99525 -27.91050 -27.84372 -27.39057 -26.20482 -23.64706 -22.84098 -21.44879 -20.79871 -20.45085 -19.54653 -18.86441 -18.12973 -17.43493 -17.11831 -17.01924 -16.87107 -16.67278 -16.35563 -16.14388 -15.66290 -15.18170 -14.96739 -14.88615 -14.60862 -14.42491 -14.33762 -14.16026 -13.60182 -13.47992 -13.36047 -13.31725 -13.23868 -13.17008 -13.05235 -12.94350 -12.89762 -12.71146 -12.57912 -11.89394 -11.80790 -11.16993 -11.15632 -10.92632 -10.51582 -10.25041 -9.72725 -9.70204 -9.19434 -8.99884 -8.51403 -6.22106 0.43866 0.98762 1.31015 1.46180 1.51209 1.54872 1.67787 1.80828 2.09905 2.24981 2.33334 2.41200 2.69679 2.86881 3.59515 3.71242 3.92423 3.96822 3.98039 4.13388 4.18261 4.18846 4.35652 4.36224 4.43613 4.46381 4.47058 4.53745 4.57166 4.67398 4.71891 4.80129 4.97874 5.05270 5.12669 5.16027 5.26156 5.34008 5.56711 5.71024 5.79419 6.00057 6.11575 6.24701 6.29887 6.45072 6.94021 7.09234 7.10910 8.60821 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.001804 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.482350 B =15515.675537 C =16156.948841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.118 3.882 4 C -0.134 4.134 5 C 0.132 3.868 6 N -0.709 5.709 7 C 0.584 3.416 8 O -0.587 6.587 9 C -0.092 4.092 10 C -0.138 4.138 11 C -0.223 4.223 12 C 0.022 3.978 13 N -0.421 5.421 14 C 0.060 3.940 15 C 0.530 3.470 16 O -0.562 6.562 17 C -0.106 4.106 18 S -0.180 6.180 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.238 1.238 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.414 0.586 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 32.157 10.855 33.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.005 4.005 4 C -0.173 4.173 5 C 0.008 3.992 6 N -0.360 5.360 7 C 0.374 3.626 8 O -0.470 6.470 9 C -0.205 4.205 10 C -0.165 4.165 11 C -0.246 4.246 12 C -0.114 4.114 13 N -0.094 5.094 14 C -0.081 4.081 15 C 0.317 3.683 16 O -0.440 6.440 17 C -0.257 4.257 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.162 1.162 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.251 0.749 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.219 0.781 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.013 32.678 9.885 34.273 hybrid contribution -1.041 -1.125 0.218 1.548 sum 1.972 31.552 10.103 33.189 Atomic orbital electron populations 1.22140 0.76730 1.04966 1.03491 1.47813 1.08552 1.04610 1.73184 1.21434 0.98045 0.84522 0.96484 1.22016 1.01606 0.95397 0.98234 1.21201 1.00001 0.95964 0.82064 1.45566 1.57730 1.22787 1.09908 1.17263 0.77510 0.80980 0.86872 1.90741 1.50655 1.58472 1.47108 1.20080 1.14377 0.92237 0.93813 1.21722 1.03106 1.00835 0.90861 1.21215 1.07833 0.95494 1.00084 1.22696 1.04570 1.02233 0.81880 1.44125 1.43284 1.14664 1.07349 1.22406 1.00416 0.90505 0.94758 1.20056 0.87276 0.85461 0.75494 1.90686 1.15389 1.87455 1.50473 1.23291 1.01706 0.93606 1.07066 1.84747 1.13968 0.99108 1.97569 1.22444 0.94388 0.92446 1.58211 0.91848 1.25539 1.02605 0.94809 0.92938 1.70009 1.36698 0.99509 1.49134 0.85887 0.80384 0.80022 0.80205 1.18683 1.18369 1.16238 0.91100 0.90844 0.87683 0.86626 0.91707 0.92702 0.88606 0.90116 0.92736 0.74882 0.82282 0.81960 0.78092 0.89863 0.87221 0.89812 0.86901 0.87171 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.24 127.77 1.31 2.29 16 2 N -0.61 -13.70 2.87 -846.78 -2.43 -16.13 16 3 C 0.12 2.15 5.41 86.38 0.47 2.62 16 4 C -0.13 -2.13 5.65 30.60 0.17 -1.96 16 5 C 0.13 2.23 5.68 86.38 0.49 2.73 16 6 N -0.71 -12.29 5.54 -467.09 -2.59 -14.88 16 7 C 0.58 13.10 7.77 86.45 0.67 13.78 16 8 O -0.59 -16.63 14.57 -4.33 -0.06 -16.69 16 9 C -0.09 -1.81 6.89 40.35 0.28 -1.53 16 10 C -0.14 -2.15 10.36 22.57 0.23 -1.92 16 11 C -0.22 -2.89 10.81 22.01 0.24 -2.65 16 12 C 0.02 0.26 11.38 83.48 0.95 1.21 16 13 N -0.42 -6.91 3.16 -534.33 -1.69 -8.60 16 14 C 0.06 0.76 10.76 127.77 1.37 2.13 16 15 C 0.53 17.95 7.69 87.66 0.67 18.63 16 16 O -0.56 -23.76 15.44 -3.03 -0.05 -23.80 16 17 C -0.11 -3.94 4.71 71.23 0.34 -3.60 16 18 S -0.18 -9.11 18.55 -56.49 -1.05 -10.15 16 19 C -0.53 -30.52 10.04 67.96 0.68 -29.84 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 21 C 0.05 2.73 5.50 84.86 0.47 3.19 16 22 N -0.92 -55.44 13.97 21.65 0.30 -55.14 16 23 Si 0.91 45.04 27.74 68.60 1.90 46.94 16 24 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.15 6.44 -2.39 -0.02 1.13 16 29 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 30 H 0.12 1.30 8.07 -2.39 -0.02 1.28 16 31 H 0.06 1.53 7.42 -2.38 -0.02 1.52 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.41 5.32 7.37 -92.71 -0.68 4.64 16 37 H 0.16 1.76 7.45 -2.91 -0.02 1.74 16 38 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 1.53 5.99 -2.39 -0.01 1.51 16 43 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 44 H 0.11 3.80 8.11 -2.39 -0.02 3.78 16 45 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -82.76 391.45 2.96 -79.80 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.28 Total: 13.58 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 8.34 Total: 5.08 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -6.41 Total: -94.75 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.11 Total: -40.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.15 kcal Total: -82.76 2.96 -79.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703541788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.553 kcal (2) G-P(sol) polarization free energy of solvation -82.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds