Wall clock time and date at job start Sat Apr 11 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46768 * 2 1 4 4 C 1.36931 * 120.00158 * 275.30718 * 3 2 1 5 5 H 1.08003 * 120.00081 * 37.58032 * 4 3 2 6 6 C 1.38819 * 120.00002 * 217.58047 * 4 3 2 7 7 N 1.31620 * 119.99778 * 21.42680 * 6 4 3 8 8 Si 1.86796 * 119.99867 * 201.42317 * 6 4 3 9 9 H 1.48503 * 109.47236 * 60.00245 * 8 6 4 10 10 H 1.48502 * 109.47112 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47296 * 300.00383 * 8 6 4 12 12 C 1.46505 * 119.99538 * 95.31569 * 3 2 1 13 13 C 1.53004 * 109.46660 * 269.99466 * 12 3 2 14 14 N 1.46500 * 109.47231 * 180.02562 * 13 12 3 15 15 C 1.34778 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.21629 * 119.99740 * 0.02562 * 15 14 13 17 17 C 1.47267 * 119.99826 * 179.97438 * 15 14 13 18 18 C 1.35204 * 123.13892 * 180.02562 * 17 15 14 19 19 S 1.70945 * 108.82343 * 179.97438 * 18 17 15 20 20 C 1.70766 * 91.13228 * 0.02562 * 19 18 17 21 21 C 1.50703 * 124.72269 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.86645 * 164.27251 * 21 20 19 23 23 C 1.54102 * 109.87515 * 285.28178 * 21 20 19 24 24 C 1.54805 * 104.18796 * 121.45395 * 23 21 20 25 25 C 1.54998 * 102.09449 * 20.87476 * 24 23 21 26 26 O 1.43744 * 109.87617 * 43.26330 * 21 20 19 27 27 N 1.28655 * 110.55694 * 359.76388 * 20 19 18 28 28 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47513 * 299.99474 * 1 2 3 30 30 H 1.09000 * 109.47616 * 59.99907 * 1 2 3 31 31 H 1.09005 * 109.47061 * 240.00091 * 2 1 3 32 32 H 1.09000 * 109.47134 * 119.99871 * 2 1 3 33 33 H 0.96999 * 119.99540 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47085 * 149.99958 * 12 3 2 35 35 H 1.08994 * 109.47750 * 29.99477 * 12 3 2 36 36 H 1.09002 * 109.47046 * 300.00138 * 13 12 3 37 37 H 1.09006 * 109.47309 * 59.99966 * 13 12 3 38 38 H 0.96998 * 119.99399 * 0.02562 * 14 13 12 39 39 H 1.07995 * 125.58639 * 359.97438 * 18 17 15 40 40 H 1.09006 * 110.48335 * 240.12779 * 23 21 20 41 41 H 1.09001 * 110.48850 * 2.77111 * 23 21 20 42 42 H 1.09005 * 110.90967 * 139.07540 * 24 23 21 43 43 H 1.09004 * 110.90558 * 262.64630 * 24 23 21 44 44 H 1.09000 * 110.61330 * 81.47786 * 25 24 23 45 45 H 1.08998 * 110.62057 * 204.47529 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3727 7 7 4.3025 2.7981 -0.6489 8 14 3.0993 4.2795 -2.6584 9 1 1.9626 5.1786 -2.3344 10 1 4.3617 5.0616 -2.6659 11 1 2.8843 3.6726 -3.9965 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8367 14 7 1.4974 3.3901 3.0997 15 6 0.5650 4.0776 3.7885 16 8 -0.5712 4.1564 3.3617 17 6 0.9217 4.7324 5.0584 18 6 0.0379 5.4369 5.8005 19 16 0.8357 6.0325 7.1901 20 6 2.3024 5.3078 6.7002 21 6 3.5966 5.3851 7.4683 22 1 4.2903 4.6283 7.1023 23 6 4.2177 6.7864 7.3088 24 6 4.3335 7.3174 8.7583 25 6 4.2900 6.0089 9.5880 26 8 3.3464 5.1823 8.8692 27 7 2.1473 4.6821 5.5868 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0490 3.4028 -0.7833 34 1 3.1615 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.7902 3.4876 1.1278 37 1 0.3539 2.0067 2.0139 38 1 2.4036 3.3275 3.4398 39 1 -1.0016 5.5971 5.5555 40 1 5.2031 6.7167 6.8481 41 1 3.5640 7.4284 6.7183 42 1 5.2781 7.8408 8.9066 43 1 3.4904 7.9629 9.0046 44 1 5.2718 5.5361 9.6107 45 1 3.9348 6.2072 10.5992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713484523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:31 Heat of formation + Delta-G solvation = -18.715872 kcal Electronic energy + Delta-G solvation = -26768.713542 eV Core-core repulsion = 22913.745046 eV Total energy + Delta-G solvation = -3854.968496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59349 -39.71132 -38.32728 -36.26535 -34.05873 -32.70864 -31.86466 -31.82666 -29.68448 -28.97392 -27.74344 -25.58486 -24.27951 -23.45773 -22.36718 -21.58691 -20.97275 -20.30926 -19.75212 -18.71139 -16.95283 -16.71497 -16.55249 -16.29282 -15.59626 -15.36680 -15.20653 -14.92540 -14.36732 -14.19118 -14.10584 -13.69425 -13.64551 -13.45267 -13.27660 -12.61761 -12.35791 -12.24744 -12.18293 -11.98698 -11.96863 -11.73928 -11.49261 -11.26325 -11.09767 -10.73310 -10.61499 -10.51203 -10.42443 -10.09128 -9.98241 -9.90261 -9.84664 -9.80412 -9.63442 -9.06543 -8.53279 -8.39879 -6.60082 -5.81063 -3.39860 0.36986 1.05376 1.49187 1.91751 3.14420 3.37353 3.42932 3.47045 3.53901 3.65490 3.90243 4.07208 4.41778 4.44082 4.48849 4.68435 4.78871 4.95671 5.11246 5.20180 5.22408 5.30934 5.32904 5.34493 5.49450 5.56935 5.57993 5.73997 6.02433 6.15308 6.19821 6.31809 6.41193 6.44421 6.54339 6.71594 6.88124 6.94090 7.04288 7.19278 7.26898 7.58662 7.82309 7.98271 8.49888 8.55240 9.16832 9.78976 10.37310 11.19009 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002639 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.378960 B =10605.758603 C =11375.174414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.138 3.862 13 C 0.096 3.904 14 N -0.698 5.698 15 C 0.585 3.415 16 O -0.543 6.543 17 C 0.018 3.982 18 C -0.231 4.231 19 S 0.231 5.769 20 C 0.018 3.982 21 C 0.155 3.845 22 H 0.105 0.895 23 C -0.148 4.148 24 C -0.156 4.156 25 C 0.045 3.955 26 O -0.367 6.367 27 N -0.431 5.431 28 H 0.036 0.964 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.099 0.901 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.406 0.594 39 H 0.190 0.810 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 8.911 22.562 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.348 5.348 15 C 0.367 3.633 16 O -0.421 6.421 17 C -0.117 4.117 18 C -0.374 4.374 19 S 0.488 5.512 20 C -0.261 4.261 21 C 0.094 3.906 22 H 0.123 0.877 23 C -0.187 4.187 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.285 6.285 27 N -0.147 5.147 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.241 0.759 39 H 0.208 0.792 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.592 9.155 22.882 24.653 hybrid contribution 0.198 0.419 -1.488 1.559 sum -0.395 9.574 21.394 23.442 Atomic orbital electron populations 1.22392 0.99938 0.99073 1.01396 1.20880 0.91754 0.86980 0.98902 1.43606 1.76062 1.08272 1.02056 1.18973 1.04775 1.21416 0.93980 0.92121 1.25191 0.94168 1.01198 0.98132 1.69988 1.03118 1.37287 1.42433 0.86467 0.76960 0.82354 0.81614 1.20801 1.21588 1.20618 1.21051 0.94479 0.97015 0.86409 1.22551 1.01300 0.96593 0.82456 1.45989 1.13412 1.51445 1.23926 1.17075 0.85252 0.78933 0.82072 1.90796 1.20118 1.62105 1.69082 1.20583 0.88126 1.03687 0.99315 1.26719 1.06913 1.04237 0.99482 1.82757 1.01501 1.47496 1.19410 1.26862 1.00772 1.01734 0.96773 1.21039 0.89369 0.98644 0.81534 0.87722 1.23053 1.02783 0.94753 0.98082 1.23179 1.03648 0.98315 0.94237 1.23678 0.93534 0.89341 0.96575 1.88985 1.57596 1.66461 1.15501 1.66826 1.20978 1.17644 1.09287 0.94458 0.93668 0.93107 0.93562 0.94718 0.93468 0.88334 0.95203 0.91531 0.92766 0.75869 0.79246 0.89065 0.89908 0.89505 0.90143 0.91399 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.21 37.16 0.38 -2.83 16 2 C 0.14 3.03 6.44 -4.04 -0.03 3.00 16 3 N -0.58 -14.41 2.43 -173.23 -0.42 -14.83 16 4 C -0.26 -7.14 9.45 -15.06 -0.14 -7.28 16 5 H 0.06 1.66 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.10 11.47 55.49 0.64 -24.47 16 8 Si 0.90 21.69 29.60 -169.99 -5.03 16.66 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.14 3.20 5.45 -4.04 -0.02 3.17 16 13 C 0.10 2.06 6.00 -4.04 -0.02 2.04 16 14 N -0.70 -13.28 5.55 -61.43 -0.34 -13.63 16 15 C 0.58 11.12 7.80 -12.59 -0.10 11.02 16 16 O -0.54 -11.76 16.71 5.25 0.09 -11.67 16 17 C 0.02 0.29 6.70 -84.53 -0.57 -0.28 16 18 C -0.23 -2.99 10.62 29.65 0.31 -2.68 16 19 S 0.23 2.30 22.72 -107.50 -2.44 -0.14 16 20 C 0.02 0.21 6.10 -13.61 -0.08 0.13 16 21 C 0.16 1.46 3.94 -27.31 -0.11 1.35 16 22 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 23 C -0.15 -1.02 6.63 -25.20 -0.17 -1.19 16 24 C -0.16 -0.76 7.16 -24.72 -0.18 -0.94 16 25 C 0.05 0.25 7.72 38.21 0.29 0.55 16 26 O -0.37 -3.41 11.01 -35.23 -0.39 -3.80 16 27 N -0.43 -6.30 10.12 -8.51 -0.09 -6.38 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.87 6.64 -51.93 -0.34 0.52 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.03 0.69 7.83 -51.93 -0.41 0.29 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.10 2.55 5.52 -51.93 -0.29 2.27 16 35 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.05 1.17 6.64 -51.93 -0.34 0.83 16 38 H 0.41 7.17 7.99 -40.82 -0.33 6.84 16 39 H 0.19 2.23 8.03 -52.49 -0.42 1.81 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -32.20 385.90 -9.40 -41.60 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.71 Total: 4.49 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.51 Total: 6.36 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.21 Total: -59.31 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.30 Total: -15.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.44 Total: -0.14 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.20 -9.40 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713484523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.880 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds