Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35962 * 116.99703 * 2 1 4 4 C 1.37562 * 120.82441 * 179.97438 * 3 2 1 5 5 C 1.38039 * 114.24975 * 180.21104 * 4 3 2 6 6 C 1.47116 * 127.76243 * 179.73111 * 5 4 3 7 7 O 1.21631 * 119.99797 * 8.39352 * 6 5 4 8 8 N 1.34781 * 120.00154 * 188.39214 * 6 5 4 9 9 C 1.46922 * 120.63039 * 11.66557 * 8 6 5 10 10 C 1.53629 * 108.54420 * 126.36603 * 9 8 6 11 11 C 1.53046 * 109.23899 * 54.85335 * 10 9 8 12 12 C 1.53036 * 109.54126 * 298.51495 * 11 10 9 13 13 H 1.09008 * 109.52301 * 301.39453 * 12 11 10 14 14 C 1.52998 * 109.49756 * 181.31666 * 12 11 10 15 15 N 1.46497 * 109.46992 * 175.15935 * 14 12 11 16 16 C 1.46502 * 120.00235 * 90.00184 * 15 14 12 17 17 C 1.36942 * 120.00163 * 270.00103 * 15 14 12 18 18 H 1.08000 * 119.99956 * 22.01964 * 17 15 14 19 19 C 1.38811 * 120.00107 * 202.02741 * 17 15 14 20 20 N 1.31618 * 120.00200 * 17.49193 * 19 17 15 21 21 Si 1.86801 * 119.99978 * 197.50126 * 19 17 15 22 22 H 1.48496 * 109.47466 * 59.99072 * 21 19 17 23 23 H 1.48502 * 109.47388 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46896 * 299.99239 * 21 19 17 25 25 C 1.46923 * 120.62866 * 191.94233 * 8 6 5 26 26 S 1.77235 * 104.48026 * 359.67983 * 5 4 3 27 27 N 1.30364 * 120.82374 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47447 * 60.00413 * 1 2 3 29 29 H 1.09006 * 109.46464 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47255 * 299.99479 * 1 2 3 31 31 H 1.07998 * 122.87868 * 359.93940 * 4 3 2 32 32 H 1.08996 * 109.58862 * 246.20112 * 9 8 6 33 33 H 1.08999 * 109.58451 * 6.62602 * 9 8 6 34 34 H 1.09000 * 109.63283 * 294.86912 * 10 9 8 35 35 H 1.08997 * 109.45747 * 174.74287 * 10 9 8 36 36 H 1.08998 * 109.45639 * 178.48632 * 11 10 9 37 37 H 1.09006 * 109.44558 * 58.52637 * 11 10 9 38 38 H 1.08994 * 109.47152 * 295.15698 * 14 12 11 39 39 H 1.08997 * 109.47197 * 55.16011 * 14 12 11 40 40 H 1.08995 * 109.47519 * 90.51998 * 16 15 14 41 41 H 1.09004 * 109.46952 * 210.52419 * 16 15 14 42 42 H 1.09001 * 109.47017 * 330.51882 * 16 15 14 43 43 H 0.96999 * 120.00000 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.59042 * 353.37481 * 25 8 6 45 45 H 1.08998 * 109.58641 * 113.66023 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4188 1.3033 0.0005 5 6 3.9005 2.5969 0.0051 6 6 5.3048 3.0354 0.0123 7 8 6.1965 2.2221 -0.1389 8 7 5.6031 4.3381 0.1864 9 6 4.5724 5.2905 0.6213 10 6 5.0864 6.0331 1.8641 11 6 6.4393 6.6737 1.5452 12 6 7.4498 5.5826 1.1840 13 1 7.5440 4.8837 2.0152 14 6 8.8103 6.2213 0.8974 15 7 9.8039 5.1702 0.6651 16 6 10.0309 4.6634 -0.6906 17 6 10.5207 4.6614 1.7151 18 1 10.1397 4.7490 2.7219 19 6 11.7372 4.0333 1.4856 20 7 12.3684 4.2180 0.3456 21 14 12.4781 2.9258 2.7947 22 1 11.5452 1.8069 3.0826 23 1 13.7703 2.3795 2.3076 24 1 12.7078 3.7102 4.0346 25 6 6.9639 4.8339 -0.0610 26 16 2.4469 3.6110 -0.0012 27 7 1.3520 2.3148 -0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0643 0.4375 0.0019 32 1 4.3738 6.0043 -0.1781 33 1 3.6578 4.7515 0.8683 34 1 5.2023 5.3300 2.6890 35 1 4.3736 6.8085 2.1444 36 1 6.7947 7.2240 2.4163 37 1 6.3275 7.3579 0.7041 38 1 8.7358 6.8529 0.0122 39 1 9.1146 6.8267 1.7511 40 1 10.8163 5.2474 -1.1702 41 1 10.3342 3.6175 -0.6414 42 1 9.1108 4.7479 -1.2689 43 1 13.2182 3.7788 0.1851 44 1 7.6277 3.9937 -0.2643 45 1 6.9568 5.5094 -0.9164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713891249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -13.425907 kcal Electronic energy + Delta-G solvation = -27624.360926 eV Core-core repulsion = 23769.621820 eV Total energy + Delta-G solvation = -3854.739106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55029 -41.06125 -39.04132 -37.51242 -37.23683 -34.67675 -33.23013 -32.60944 -31.57580 -29.17581 -28.30938 -27.46437 -26.94691 -25.19431 -24.02941 -22.80536 -22.23357 -21.04320 -20.29805 -19.52200 -18.76339 -18.62820 -17.46611 -17.30038 -17.22480 -16.87352 -16.49726 -15.94832 -15.77393 -15.56665 -15.24824 -15.21022 -14.80716 -14.50547 -14.40407 -14.16199 -13.94987 -13.91931 -13.19019 -13.11912 -13.01407 -12.79723 -12.63610 -12.56452 -12.39142 -12.21745 -12.10994 -12.04158 -11.93056 -11.83508 -11.61472 -11.50966 -11.29183 -11.13603 -10.92086 -10.56493 -9.75579 -9.41161 -8.73116 -7.83174 -5.26721 -1.07957 -0.04064 0.40148 1.04417 1.42364 1.47353 1.52411 1.54383 1.81105 2.20811 2.51284 3.17848 3.30185 3.60672 3.70087 3.78203 3.96038 4.03689 4.06353 4.13661 4.29763 4.34771 4.35119 4.39729 4.50707 4.56294 4.70206 4.78188 4.80430 4.83330 4.90814 4.92724 5.00087 5.08312 5.14898 5.22897 5.35947 5.43357 5.46241 5.60641 5.64293 5.69813 5.94790 6.14973 6.34997 6.81489 7.16900 7.91634 8.33823 9.20898 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015867 B = 0.002925 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.282613 B = 9569.272503 C =10617.089483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.303 3.697 4 C -0.133 4.133 5 C -0.199 4.199 6 C 0.583 3.417 7 O -0.559 6.559 8 N -0.599 5.599 9 C 0.096 3.904 10 C -0.124 4.124 11 C -0.107 4.107 12 C -0.110 4.110 13 H 0.039 0.961 14 C 0.155 3.845 15 N -0.617 5.617 16 C 0.178 3.822 17 C -0.256 4.256 18 H 0.066 0.934 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.958 3.042 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.128 3.872 26 S 0.366 5.634 27 N -0.547 5.547 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.173 0.827 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.050 0.950 40 H -0.001 1.001 41 H 0.008 0.992 42 H 0.034 0.966 43 H 0.247 0.753 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.873 2.841 -0.718 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.215 6.215 3 C 0.090 3.910 4 C -0.171 4.171 5 C -0.330 4.330 6 C 0.370 3.630 7 O -0.439 6.439 8 N -0.330 5.330 9 C -0.028 4.028 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.132 4.132 13 H 0.058 0.942 14 C 0.029 3.971 15 N -0.340 5.340 16 C 0.032 3.968 17 C -0.387 4.387 18 H 0.084 0.916 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.787 3.213 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.006 3.994 26 S 0.518 5.482 27 N -0.387 5.387 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.190 0.810 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.018 0.982 41 H 0.027 0.973 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.673 3.663 -0.883 28.919 hybrid contribution 1.922 -2.578 0.553 3.263 sum -26.751 1.084 -0.330 26.775 Atomic orbital electron populations 1.23226 0.74991 1.05453 1.02573 1.86307 1.24741 1.22459 1.87997 1.19750 0.89405 0.85731 0.96074 1.20861 0.93016 0.98731 1.04470 1.25833 0.99080 0.98824 1.09269 1.17103 0.85855 0.82810 0.77254 1.90881 1.48511 1.53333 1.51141 1.48121 1.12534 1.06736 1.65655 1.22571 0.88485 0.92245 0.99545 1.21973 0.97957 1.00413 0.95920 1.21537 0.93381 0.96688 1.02945 1.22027 0.96846 0.97883 0.96443 0.94193 1.20939 0.87129 0.89419 0.99607 1.44113 1.43290 1.42360 1.04195 1.20534 0.95035 0.96325 0.84859 1.19387 0.98929 1.31481 0.88891 0.91593 1.25654 0.96835 1.03236 0.99193 1.70219 1.15783 1.45844 1.26460 0.85470 0.76986 0.79425 0.79410 1.21479 1.21979 1.19639 1.21751 0.80554 0.98822 0.98241 1.84726 0.86416 1.09115 1.67893 1.76272 1.29592 1.02792 1.30047 0.92046 0.85351 0.92018 0.80992 0.86778 0.90155 0.92789 0.86475 0.90716 0.89410 0.92370 0.93194 0.98236 0.97261 0.94766 0.94385 0.91963 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.43 113.37 1.18 1.60 16 2 O -0.31 -6.34 10.51 -93.12 -0.98 -7.32 16 3 C 0.30 6.84 7.36 84.75 0.62 7.46 16 4 C -0.13 -3.26 10.11 22.06 0.22 -3.04 16 5 C -0.20 -4.92 6.41 24.55 0.16 -4.77 16 6 C 0.58 18.41 7.63 86.57 0.66 19.07 16 7 O -0.56 -23.42 16.42 -4.13 -0.07 -23.49 16 8 N -0.60 -15.97 2.97 -822.31 -2.44 -18.41 16 9 C 0.10 1.57 5.63 86.51 0.49 2.06 16 10 C -0.12 -1.94 6.10 30.82 0.19 -1.75 16 11 C -0.11 -2.12 5.16 30.62 0.16 -1.97 16 12 C -0.11 -3.43 2.55 -10.72 -0.03 -3.46 16 13 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 14 C 0.16 5.84 5.16 86.38 0.45 6.29 16 15 N -0.62 -31.00 2.76 -726.95 -2.01 -33.00 16 16 C 0.18 9.02 8.11 127.77 1.04 10.06 16 17 C -0.26 -14.46 9.63 84.03 0.81 -13.65 16 18 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 19 C -0.05 -3.16 4.96 84.86 0.42 -2.74 16 20 N -0.94 -57.43 10.95 21.65 0.24 -57.20 16 21 Si 0.96 47.25 29.59 68.60 2.03 49.28 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 25 C 0.13 4.02 4.45 86.36 0.38 4.41 16 26 S 0.37 6.42 19.64 -56.49 -1.11 5.31 16 27 N -0.55 -11.55 11.03 -175.21 -1.93 -13.48 16 28 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 29 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.19 3.34 -22.56 -0.08 1.12 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.95 8.07 -2.39 -0.02 1.93 16 39 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 40 H 0.00 -0.03 7.62 -2.39 -0.02 -0.05 16 41 H 0.01 0.50 7.09 -2.39 -0.02 0.48 16 42 H 0.03 1.47 6.07 -2.39 -0.01 1.45 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.06 2.59 5.29 -2.39 -0.01 2.58 16 45 H 0.09 2.36 8.11 -2.39 -0.02 2.34 16 Total: -1.00 -75.89 370.01 1.42 -74.47 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.93 Total: 4.26 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.75 Total: 19.58 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.14 Total: -122.09 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.05 Total: -30.81 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.11 Total: 5.31 kcal Total: -75.89 1.42 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713891249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.048 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds